prot_E_fasciculatus_S2_contig9631.17642.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig9631.17642.1
Unique Nameprot_E_fasciculatus_S2_contig9631.17642.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length280
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9631.17642.1 vs. uniprot
Match: D8LFT0_ECTSI (TFIIH subunit (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT0_ECTSI)

HSP 1 Score: 505 bits (1300), Expect = 1.100e-173
Identity = 273/280 (97.50%), Postives = 275/280 (98.21%), Query Frame = 0
Query:    1 MSVPGPSLGAGEEVVMTAHAVHKKTPGTVWFTSRRALWKAADGKAAVQRVEVAWAAVKSFQCSPASEARAMMRLLRVTEGQPPIIFRFTETPGGTPREVLERAQAAVRKALKGDAGAGKSKTGVAEGGGAKGTGKGKAGKDGGSS-KDALKKMKWKTRGGLLGTASGGQSLRHRDSMPGGRMRDVHDARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFK 279
            MSVPGPSLGAGEEVVMTAHAVHKKTPGTVWFTSRRALWKAADGKAAVQRVEVAWAAVKSFQCSPASEARAMMRLLRVTEGQPPIIFRFTETPGGTPREVLERAQAAVRKALKGDAGAG+SKTGVAEGG   GTGKGKAGK GGSS KDALKKMKWKTRGGLLGTASGGQSLRHRDSMPGGRMR+VHDARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFK
Sbjct:    1 MSVPGPSLGAGEEVVMTAHAVHKKTPGTVWFTSRRALWKAADGKAAVQRVEVAWAAVKSFQCSPASEARAMMRLLRVTEGQPPIIFRFTETPGGTPREVLERAQAAVRKALKGDAGAGRSKTGVAEGG-TNGTGKGKAGKYGGSSSKDALKKMKWKTRGGLLGTASGGQSLRHRDSMPGGRMRNVHDARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFK 279          
BLAST of mRNA_E_fasciculatus_S2_contig9631.17642.1 vs. uniprot
Match: A0A6H5JXC6_9PHAE (BSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC6_9PHAE)

HSP 1 Score: 361 bits (927), Expect = 6.970e-118
Identity = 199/209 (95.22%), Postives = 202/209 (96.65%), Query Frame = 0
Query:   71 MMRLLRVTEGQPPIIFRFTETPGGTPREVLERAQAAVRKALKGDAGAGKSKTGVAEGGGAKGTGKGKAGKDGGSSKDALKKMKWKTRGGLLGTASGGQSLRHRDSMPGGRMRDVHDARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFK 279
            MMRLLRVTEGQPPIIFRFTETPGGTPREVLERAQAAVRKALKGDAGAG+ +TGVAEGG   G GKGKAGKDGGSSK+ALKKMKWKTRGGLLGTASGGQSLRH  SMPGGRMRDVHDARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFK
Sbjct:    1 MMRLLRVTEGQPPIIFRFTETPGGTPREVLERAQAAVRKALKGDAGAGRIRTGVAEGG-TNGAGKGKAGKDGGSSKNALKKMKWKTRGGLLGTASGGQSLRH--SMPGGRMRDVHDARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFK 206          
BLAST of mRNA_E_fasciculatus_S2_contig9631.17642.1 vs. uniprot
Match: A0A835YZ40_9STRA (BSD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ40_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.310e-10
Identity = 73/248 (29.44%), Postives = 114/248 (45.97%), Query Frame = 0
Query:   52 VAWAAVKSFQCSPASEARAMMRLLRVTEGQPPIIFRFTETPGGTPREVLERAQAAVRKALKGDAGA-------------------GKSKTGVAEGGGAKGTGKGKAGKDGGSSKDALKKMKWKTRGGLLGTASGGQSLRHRDSMPGGRMRDVHDA---RQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIV 277
            +AW+ VK    SPA+ A+AM+++   +    P++ +  ++   T  ++L  A++ + K L+  AG+                   GK+K+   +GG          G   G+        + +T G L G  +GG++L      P         A   ++RAALLA D VL AQY ++V+G V+++ EFW  RR  L  E A   +R  G  S + +D V          F+L  R IH IF MYP V
Sbjct:    1 MAWSLVKDHMVSPATSAKAMIKVNPTSSAVDPMVIQVLDSGLATAADILATARSTILKVLRSYAGSSXXXXXXXXXXXXXXXXXXGKAKSLNGDGG---------EGAPRGAQSWGAGHKRQRTAGPLSG--AGGRALDAAAVQPPAXXXXXXAADVAQRRAALLARDAVLRAQYADVVEGGVLSDAEFWAGRRGMLEGEAAAARARRQGARSALGAD-VRPAVEGAKQVFRLTPRDIHQIFLMYPAV 236          
BLAST of mRNA_E_fasciculatus_S2_contig9631.17642.1 vs. uniprot
Match: A0A2P4XBN0_9STRA (General transcription factor IIH subunit (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XBN0_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.730e-9
Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 0
Query:  186 DARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVF 278
            + +QRAALLA +  L  Q+ EMV+  +++EE+FW SRR  +A E +K   + TG  S + +DL A+      +K+ LNA  IH IF  YP V+
Sbjct:  123 EIKQRAALLAANPALKRQHTEMVNDGLISEEDFWASRRHLIAGEASKR--QKTGKTSAILTDLAADNEGGNVVKYNLNAEVIHQIFIQYPAVY 213          
BLAST of mRNA_E_fasciculatus_S2_contig9631.17642.1 vs. uniprot
Match: A0A421FK41_9STRA (BSD domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FK41_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.100e-9
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 0
Query:  186 DARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVF 278
            + +QRAALLA +  L  Q+ EMV+  +++EE+FW SRR  +A E +K   + TG  S + +DL A+  + G + K+ LNA  IH IF  YP V+
Sbjct:  102 EIKQRAALLAANPALKRQHTEMVNDGLISEEDFWASRRHLIAGEASKR--QKTGKTSAILTDLAADNDAAGNVVKYNLNAEVIHQIFIQYPAVY 193          
BLAST of mRNA_E_fasciculatus_S2_contig9631.17642.1 vs. uniprot
Match: A0A3F2RJ52_9STRA (BSD domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RJ52_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.990e-9
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 0
Query:  186 DARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVF 278
            + +QRAALLA +  L  Q+ EMV+  +++EE+FW SRR  +A E +K   + TG  S + +DL A+  + G + K+ LNA  IH IF  YP V+
Sbjct:  123 EIKQRAALLAANPALKRQHTEMVNDGLISEEDFWASRRHLIAGEASKR--QKTGKTSAILTDLAADNDAAGNVVKYNLNAEVIHQIFIQYPAVY 214          
BLAST of mRNA_E_fasciculatus_S2_contig9631.17642.1 vs. uniprot
Match: M4B6V9_HYAAE (BSD domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6V9_HYAAE)

HSP 1 Score: 67.0 bits (162), Expect = 7.000e-9
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 0
Query:  186 DARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIV 277
            + +QRAALLA +  L  Q+ EMV+  +++EE+FW SRR  +A E +K   + TG  S + +DL AE  + G + K+ LNA  IH IF  YP V
Sbjct:  120 EIKQRAALLAANPTLKRQHMEMVNDGLISEEDFWASRRHLIAGEASKR--QKTGKTSAILTDLAAENDAGGNVVKYNLNAEVIHQIFIQYPAV 210          
BLAST of mRNA_E_fasciculatus_S2_contig9631.17642.1 vs. uniprot
Match: A0A0P1APW3_PLAHL (General transcription factor iih n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1APW3_PLAHL)

HSP 1 Score: 67.0 bits (162), Expect = 7.040e-9
Identity = 41/94 (43.62%), Postives = 58/94 (61.70%), Query Frame = 0
Query:  186 DARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVF 278
            + +QRAALLA +  L  Q+ EMV+  +++EE+FW SRR  +A E +K   + T   S + +DL A   S G + K+ LNA  IH IFT YP V+
Sbjct:  124 EIKQRAALLAANPALKRQHTEMVNDGLISEEDFWASRRHLIAGEASKR--QKTAKTSAILTDLAANNDSGGNVVKYNLNAEVIHQIFTQYPAVY 215          
BLAST of mRNA_E_fasciculatus_S2_contig9631.17642.1 vs. uniprot
Match: A0A2D4CGY8_PYTIN (General transcription factor IIH subunit, putative n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CGY8_PYTIN)

HSP 1 Score: 66.6 bits (161), Expect = 9.440e-9
Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 0
Query:  171 RHRDSMPGGRMRDVHDARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIV 277
            RHR +     + +  + + RAALLA +  L  Q+ EMV+  +++EE+FW +RR  +A E +K   + TG  S + +DL A++ S G + K+ LNA  IH IF  YP V
Sbjct:  113 RHRSASDRTPLCNAAEIKHRAALLASNATLKRQHTEMVNQGLISEEDFWATRRHLIANEASKR--QKTGKTSAILTDLTADSESGGNVVKYNLNAEVIHQIFIQYPAV 218          
BLAST of mRNA_E_fasciculatus_S2_contig9631.17642.1 vs. uniprot
Match: A0A662X0X0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X0X0_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.350e-8
Identity = 39/94 (41.49%), Postives = 58/94 (61.70%), Query Frame = 0
Query:  186 DARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVF 278
            + +QRAALLA +  L  Q+ EMV+  +++EE+FW SRR  +A E +K   + TG  S + +DL  +  + G + K+ LNA  IH IF  YP V+
Sbjct:  150 EIKQRAALLAANPTLKRQHTEMVNDGLISEEDFWASRRHLIAAEASKR--QKTGKTSAILTDLAGDNDTGGNVVKYNLNAEVIHQIFIQYPAVY 241          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9631.17642.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LFT0_ECTSI1.100e-17397.50TFIIH subunit (Partial) (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JXC6_9PHAE6.970e-11895.22BSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YZ40_9STRA1.310e-1029.44BSD domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A2P4XBN0_9STRA1.730e-941.94General transcription factor IIH subunit (Fragment... [more]
A0A421FK41_9STRA5.100e-942.55BSD domain-containing protein n=2 Tax=Phytophthora... [more]
A0A3F2RJ52_9STRA5.990e-942.55BSD domain-containing protein n=1 Tax=Phytophthora... [more]
M4B6V9_HYAAE7.000e-944.09BSD domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A0P1APW3_PLAHL7.040e-943.62General transcription factor iih n=1 Tax=Plasmopar... [more]
A0A2D4CGY8_PYTIN9.440e-938.89General transcription factor IIH subunit, putative... [more]
A0A662X0X0_9STRA2.350e-841.49Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013876TFIIH p62 subunit, N-terminalPFAMPF08567PH_TFIIHcoord: 22..104
e-value: 3.6E-13
score: 49.6
NoneNo IPR availablePANTHERPTHR12856:SF0GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 1coord: 15..277
NoneNo IPR availableSUPERFAMILY50729PH domain-likecoord: 11..92
NoneNo IPR availableSUPERFAMILY140383BSD domain-likecoord: 184..223
IPR027079TFIIH subunit Tfb1/GTF2H1PANTHERPTHR12856TRANSCRIPTION INITIATION FACTOR IIH-RELATEDcoord: 15..277

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9631contigE_fasciculatus_S2_contig9631:225..3767 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9631.17642.1mRNA_E_fasciculatus_S2_contig9631.17642.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig9631 225..3767 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig9631.17642.1 ID=prot_E_fasciculatus_S2_contig9631.17642.1|Name=mRNA_E_fasciculatus_S2_contig9631.17642.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=280bp
MSVPGPSLGAGEEVVMTAHAVHKKTPGTVWFTSRRALWKAADGKAAVQRV
EVAWAAVKSFQCSPASEARAMMRLLRVTEGQPPIIFRFTETPGGTPREVL
ERAQAAVRKALKGDAGAGKSKTGVAEGGGAKGTGKGKAGKDGGSSKDALK
KMKWKTRGGLLGTASGGQSLRHRDSMPGGRMRDVHDARQRAALLAGDEVL
TAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVA
ETTSTGTLKFKLNARTIHSIFTMYPIVFK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027079Tfb1/GTF2H1
IPR013876TFIIH_BTF_p62_N