Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10007.1.1 vs. uniprot
Match:
D7FLU9_ECTSI (C6 transcription factor Prf n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU9_ECTSI)
HSP 1 Score: 57.8 bits (138), Expect = 1.470e-6
Identity = 34/78 (43.59%), Postives = 40/78 (51.28%), Query Frame = 3
Query: 213 GELPKANGAEVVAAPNGPGARRASCDFCSRRKRKCNGRE-PCQNCSKLNLLCHFSLKRKSG-------RKRKPRPEDE 422
G G + + P GP R SCD C+ RK KC+GRE CQ C + N CH+SLK KSG RK P P E
Sbjct: 401 GSSENGRGRDAGSKPAGPKPLRTSCDRCTMRKIKCDGREGKCQRCDRDNQFCHYSLKSKSGPKPNSIRRKSSPTPPRE 478
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10007.1.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.47e-6 / Id = 43.59 Sequence D7FLU9_ECTSI
Match Name E-value Identity Description
D7FLU9_ECTSI 1.470e-6 43.59 C6 transcription factor Prf n=1 Tax=Ectocarpus sil... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Seed ortholog 162425.CADANIAP00010282 PFAMs Fungal_trans,Zn_clus Model size 539 Max annot lvl 4751|Fungi KEGG ko ko:K21451 Hectar predicted targeting category other localisation Exons 2 Evalue 4.17e-06 EggNOG OGs 2BVPB@1|root,2SMBZ@2759|Eukaryota,39ZE8@33154|Opisthokonta,3P11U@4751|Fungi,3QSQN@4890|Ascomycota,20B12@147545|Eurotiomycetes Description Fungal specific transcription factor domain Cds size 405 COG category P BRITE ko00000,ko03000
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789146.643241-CDS-D-mesarthrocarpus_Contig10007:900..1089 1680789146.643241-CDS-D-mesarthrocarpus_Contig10007:900..1089 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10007 901..1089 - 1680789146.653625-CDS-D-mesarthrocarpus_Contig10007:1551..1767 1680789146.653625-CDS-D-mesarthrocarpus_Contig10007:1551..1767 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10007 1552..1767 -
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789146.6623683-UTR-D-mesarthrocarpus_Contig10007:1767..1901 1680789146.6623683-UTR-D-mesarthrocarpus_Contig10007:1767..1901 Discosporangium mesarthrocarpum MT17_79 UTR D-mesarthrocarpus_Contig10007 1768..1901 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10007.1.1
>prot_D-mesarthrocarpus_Contig10007.1.1 ID=prot_D-mesarthrocarpus_Contig10007.1.1|Name=mRNA_D-mesarthrocarpus_Contig10007.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=135bp
MRGDTGGSDYDSTSDSGWDFGGSGGGGELPKANGAEVVAAPNGPGARRAS back to top mRNA from alignment at D-mesarthrocarpus_Contig10007:901..1901-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10007.1.1 ID=mRNA_D-mesarthrocarpus_Contig10007.1.1|Name=mRNA_D-mesarthrocarpus_Contig10007.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1001bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10007:901..1901- (Discosporangium mesarthrocarpum MT17_79)CTATTTGATGGATGGAAGCCGGAGAGGGTAAGTATAAGTTGTATCAAAGG
TTGGGTGGGACTAAAGTTGCAGCTGTCGAGATCACCGCCGAATTAATATC
TTGGAAAGAGGGACGAAACCTCTGCACTTAACAG ATGCGTGGTGATACTG
GGGGGAGTGACTATGACAGCACGTCGGACTCCGGCTGGGACTTTGGGGGA
TCTGGGGGCGGAGGAGAGTTGCCTAAGGCGAATGGAGCCGAGGTAGTTGC
AGCACCGAATGGACCCGGTGCTCGCCGCGCCAGCTGCGACTTCTGCTCTC
GTAGGAAACGCAAGTGCAATGGGAGAGAGCCTTGCCAGAACTGCTCTAAG
GTGAGATGAACAATGCACTACAGTAGTGGACTCTGGATGAACGACTCCGA
CGAAGGTTTTGTTTGAACTGGTTGACACACTGTTTGCTCAAGAAAAAAAG
GCACCTTGGAGAATATTTTCTGGATTATCTCGCCAGAGAAAGTAACCTGC
CGTACTTTATCTCGCTTGTGGTCATGATACAGGGGGAGGGACCCATTTTG
GTGCAACATCGGTCTATTTGTAGCGGAATGATGGCAATGCTTGACTTCAC
CAATTTCCCCTTAGTAGTCTGATCCAGGCAGTCCACTACCTAGTGCAGAA
GTGATCAGTCCCGGTTGCTGGCTGCCTCCTTCTCAAGCATGAAACCAAGA
CCTCGGAGTTGCTTCGGATGCGTTCCCTAGGTCCCCTCGCCCCCACCGTC
TGTTCCGCCAAGCCTCACTACCCTTTCCCACCCCGACGACGCATGTCCCA
CCTCTGGCGTAGCTGAACCTGTTGTGCCACTTTAGCTTGAAGCGCAAGAG
CGGCCGAAAAAGGAAGCCCCGCCCGGAAGATGAACCTACTACTGGTGGCG
TGAACAGTGGAGTCTCCACCCCAGCTGTGGGGGGGCAAGGACGCGCGGGA
GCGGGTATGAAACCCGTGAAAAGGAGGAATACGGCCACTCCATCCACGTG
A back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10007:901..1901-
>mRNA_D-mesarthrocarpus_Contig10007.1.1 ID=mRNA_D-mesarthrocarpus_Contig10007.1.1|Name=mRNA_D-mesarthrocarpus_Contig10007.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=405bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10007:901..1901- (Discosporangium mesarthrocarpum MT17_79) back to top