mRNA_D-mesarthrocarpus_Contig10007.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10007.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10007.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10007.1.1 vs. uniprot
Match: D7FLU9_ECTSI (C6 transcription factor Prf n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU9_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.470e-6
Identity = 34/78 (43.59%), Postives = 40/78 (51.28%), Query Frame = 3 
Query:  213 GELPKANGAEVVAAPNGPGARRASCDFCSRRKRKCNGRE-PCQNCSKLNLLCHFSLKRKSG-------RKRKPRPEDE 422
            G      G +  + P GP   R SCD C+ RK KC+GRE  CQ C + N  CH+SLK KSG       RK  P P  E
Sbjct:  401 GSSENGRGRDAGSKPAGPKPLRTSCDRCTMRKIKCDGREGKCQRCDRDNQFCHYSLKSKSGPKPNSIRRKSSPTPPRE 478
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10007.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLU9_ECTSI1.470e-643.59C6 transcription factor Prf n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10007contigD-mesarthrocarpus_Contig10007:901..1901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog162425.CADANIAP00010282
PFAMsFungal_trans,Zn_clus
Model size539
Max annot lvl4751|Fungi
KEGG koko:K21451
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.17e-06
EggNOG OGs2BVPB@1|root,2SMBZ@2759|Eukaryota,39ZE8@33154|Opisthokonta,3P11U@4751|Fungi,3QSQN@4890|Ascomycota,20B12@147545|Eurotiomycetes
DescriptionFungal specific transcription factor domain
Cds size405
COG categoryP
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789146.643241-CDS-D-mesarthrocarpus_Contig10007:900..10891680789146.643241-CDS-D-mesarthrocarpus_Contig10007:900..1089Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10007 901..1089 -
1680789146.653625-CDS-D-mesarthrocarpus_Contig10007:1551..17671680789146.653625-CDS-D-mesarthrocarpus_Contig10007:1551..1767Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10007 1552..1767 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789146.6623683-UTR-D-mesarthrocarpus_Contig10007:1767..19011680789146.6623683-UTR-D-mesarthrocarpus_Contig10007:1767..1901Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10007 1768..1901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10007.1.1prot_D-mesarthrocarpus_Contig10007.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10007 901..1767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10007.1.1

>prot_D-mesarthrocarpus_Contig10007.1.1 ID=prot_D-mesarthrocarpus_Contig10007.1.1|Name=mRNA_D-mesarthrocarpus_Contig10007.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=135bp
MRGDTGGSDYDSTSDSGWDFGGSGGGGELPKANGAEVVAAPNGPGARRAS
CDFCSRRKRKCNGREPCQNCSKLNLLCHFSLKRKSGRKRKPRPEDEPTTG
GVNSGVSTPAVGGQGRAGAGMKPVKRRNTATPST*
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mRNA from alignment at D-mesarthrocarpus_Contig10007:901..1901-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10007.1.1 ID=mRNA_D-mesarthrocarpus_Contig10007.1.1|Name=mRNA_D-mesarthrocarpus_Contig10007.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1001bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10007:901..1901- (Discosporangium mesarthrocarpum MT17_79)
CTATTTGATGGATGGAAGCCGGAGAGGGTAAGTATAAGTTGTATCAAAGG
TTGGGTGGGACTAAAGTTGCAGCTGTCGAGATCACCGCCGAATTAATATC
TTGGAAAGAGGGACGAAACCTCTGCACTTAACAGATGCGTGGTGATACTG
GGGGGAGTGACTATGACAGCACGTCGGACTCCGGCTGGGACTTTGGGGGA
TCTGGGGGCGGAGGAGAGTTGCCTAAGGCGAATGGAGCCGAGGTAGTTGC
AGCACCGAATGGACCCGGTGCTCGCCGCGCCAGCTGCGACTTCTGCTCTC
GTAGGAAACGCAAGTGCAATGGGAGAGAGCCTTGCCAGAACTGCTCTAAG
GTGAGATGAACAATGCACTACAGTAGTGGACTCTGGATGAACGACTCCGA
CGAAGGTTTTGTTTGAACTGGTTGACACACTGTTTGCTCAAGAAAAAAAG
GCACCTTGGAGAATATTTTCTGGATTATCTCGCCAGAGAAAGTAACCTGC
CGTACTTTATCTCGCTTGTGGTCATGATACAGGGGGAGGGACCCATTTTG
GTGCAACATCGGTCTATTTGTAGCGGAATGATGGCAATGCTTGACTTCAC
CAATTTCCCCTTAGTAGTCTGATCCAGGCAGTCCACTACCTAGTGCAGAA
GTGATCAGTCCCGGTTGCTGGCTGCCTCCTTCTCAAGCATGAAACCAAGA
CCTCGGAGTTGCTTCGGATGCGTTCCCTAGGTCCCCTCGCCCCCACCGTC
TGTTCCGCCAAGCCTCACTACCCTTTCCCACCCCGACGACGCATGTCCCA
CCTCTGGCGTAGCTGAACCTGTTGTGCCACTTTAGCTTGAAGCGCAAGAG
CGGCCGAAAAAGGAAGCCCCGCCCGGAAGATGAACCTACTACTGGTGGCG
TGAACAGTGGAGTCTCCACCCCAGCTGTGGGGGGGCAAGGACGCGCGGGA
GCGGGTATGAAACCCGTGAAAAGGAGGAATACGGCCACTCCATCCACGTG
A
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10007:901..1901-

>mRNA_D-mesarthrocarpus_Contig10007.1.1 ID=mRNA_D-mesarthrocarpus_Contig10007.1.1|Name=mRNA_D-mesarthrocarpus_Contig10007.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=405bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10007:901..1901- (Discosporangium mesarthrocarpum MT17_79)
ATGCGTGGTGATACTGGGGGGAGTGACTATGACAGCACGTCGGACTCCGG
CTGGGACTTTGGGGGATCTGGGGGCGGAGGAGAGTTGCCTAAGGCGAATG
GAGCCGAGGTAGTTGCAGCACCGAATGGACCCGGTGCTCGCCGCGCCAGC
TGCGACTTCTGCTCTCGTAGGAAACGCAAGTGCAATGGGAGAGAGCCTTG
CCAGAACTGCTCTAAGCTGAACCTGTTGTGCCACTTTAGCTTGAAGCGCA
AGAGCGGCCGAAAAAGGAAGCCCCGCCCGGAAGATGAACCTACTACTGGT
GGCGTGAACAGTGGAGTCTCCACCCCAGCTGTGGGGGGGCAAGGACGCGC
GGGAGCGGGTATGAAACCCGTGAAAAGGAGGAATACGGCCACTCCATCCA
CGTGA
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