Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10152.1.1 vs. uniprot
Match:
D7FQ90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ90_ECTSI)
HSP 1 Score: 120 bits (301), Expect = 3.840e-29
Identity = 53/77 (68.83%), Postives = 68/77 (88.31%), Query Frame = 1
Query: 1 PSLQLQPDVVSYTSAIHACSGPNGNWEKAYYQLLDKMWQ-VTGARPNKVSYDLVMQACGHGGEWELGVALLEDMREV 228
P+ +++PDV+S+TSAIHAC+GP GNWEKAY QLLD MWQ GA+P+K +YDLV+QACGHGGEWELGV L++DMR++
Sbjct: 2 PAAKVKPDVISFTSAIHACAGPTGNWEKAY-QLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDL 77
BLAST of mRNA_D-mesarthrocarpus_Contig10152.1.1 vs. uniprot
Match:
A0A6H5L2A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A2_9PHAE)
HSP 1 Score: 90.5 bits (223), Expect = 1.320e-18
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 1
Query: 1 PSLQLQPDVVSYTSAIHACSGPNGNWEKAYYQLLDKMWQ-VTGARPNKVSYDLVMQACGHGGEWELGVALLEDMREV 228
P+ +++ +GP GNWEKAY QLLD MWQ GA+P+K +YDLV+QACGHGGEWELGV L++DMR++
Sbjct: 419 PAAKVKXXXXXXXXXXXXXAGPTGNWEKAY-QLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDL 494
BLAST of mRNA_D-mesarthrocarpus_Contig10152.1.1 vs. uniprot
Match:
A0A7S0LID2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LID2_9EUKA)
HSP 1 Score: 52.8 bits (125), Expect = 8.090e-6
Identity = 27/63 (42.86%), Postives = 35/63 (55.56%), Query Frame = 1
Query: 4 SLQLQPDVVSYTSAIHACSGPNGNWEKAYYQLLDKMWQVTGARPNKVSYDLVMQACGHGGEWE 192
S ++ PDVVSY +AI ACS + +W +LL +M G RPN +Y AC GG WE
Sbjct: 45 SPRMPPDVVSYATAISACSRDSAHWRTGV-ELLRQM-DAVGVRPNVFAYASAASACATGGAWE 105
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10152.1.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 3.84e-29 / Id = 68.83 Expect = 1.32e-18 / Id = 54.55 Expect = 8.09e-6 / Id = 42.86 Sequence D7FQ90_ECTSI A0A6H5L2A2_9PHAE A0A7S0LID2_9EUKA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 0 Seed ortholog 2880.D7FQ90 Model size 381 Max annot lvl 2759|Eukaryota Hectar predicted targeting category other localisation Exons 2 Evalue 6.29e-30 EggNOG OGs KOG4197@1|root,KOG4197@2759|Eukaryota Description endonuclease activity Cds size 381 COG category S
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789159.0894463-CDS-D-mesarthrocarpus_Contig10152:2643..2736 1680789159.0894463-CDS-D-mesarthrocarpus_Contig10152:2643..2736 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10152 2644..2736 + 1680789159.1007373-CDS-D-mesarthrocarpus_Contig10152:3283..3571 1680789159.1007373-CDS-D-mesarthrocarpus_Contig10152:3283..3571 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10152 3284..3571 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10152.1.1
>prot_D-mesarthrocarpus_Contig10152.1.1 ID=prot_D-mesarthrocarpus_Contig10152.1.1|Name=mRNA_D-mesarthrocarpus_Contig10152.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=127bp
PSLQLQPDVVSYTSAIHACSGPNGNWEKAYYQLLDKMWQVTGARPNKVSY back to top mRNA from alignment at D-mesarthrocarpus_Contig10152:2644..3571+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10152.1.1 ID=mRNA_D-mesarthrocarpus_Contig10152.1.1|Name=mRNA_D-mesarthrocarpus_Contig10152.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=928bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10152:2644..3571+ (Discosporangium mesarthrocarpum MT17_79)CCCTCCTTGCAGTTACAACCGGATGTGGTCTCCTACACGTCTGCCATTCA
TGCCTGTTCTGGCCCAAATGGAAACTGGGAGAAGGCGTATTAC GTGAGCG
AGTGGGGGGGGGACTCATGCAACCCTAACCCTAACCCTAACCCTAACCCC
AACCCCAACCCTAACCCCAACCCCAACCCTAACCCTAACCCTAACCCTAA
CCCTACAGTACTTCGCACACTCCAGAGTAGAGCCTTGCAAGGGCAACTCA
CACCTCCACACAGCCCGAACCCAAACCAGCACACCTCCCACCCACCCACC
CACCCCGCCTGCCCACTCCAGCTCAAGATCCCCTGGAACCAAACGTGAAC
CCTCTCTCATCCCTCCTTCCTATGAGTGCACGGACGTCCCTGACCCTAAC
CCTATCCCTGATCCTTGCCCTAGCCCTAGCCCTAGCCCTTGCTCTAACCG
TAGCCCTAACCCTTGCCCTAACCCTTGCCCTAACCCTTGCCCTAACCATA
GCGCTATCCCTACTAAGCCTGACCCCAACCCCCTGTGTGTGCCTGAACTC
CTGTGCGCCTCCGGCACCTCGATTGTCGGGGATTTATTTCCAATAACGGG
TAAAAAAAACGCCAAAAAAAACTACGACTCCGAAATCAAGCAGCTCCTAG
ACAAGATGTGGCAGGTGACCGGGGCCCGCCCAAACAAGGTCTCTTATGAC
CTGGTGATGCAGGCGTGTGGTCACGGCGGGGAGTGGGAGCTCGGGGTGGC
CCTCCTGGAGGACATGCGGGAGGTGGGGGCCACACCAGACCTGCAGTCCT
TCAACATTGCCGTCTCAGCATGCGCCCGCTGTGGCGAGTGGAAGGAGGCG
TTCTTGCTGGTGGGGCTCATGCGTAGGGCTGGGGTTGTCCCAGATGCATT
CACGTACTCAGCCCTGATCCACGGGTGA back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10152:2644..3571+
>mRNA_D-mesarthrocarpus_Contig10152.1.1 ID=mRNA_D-mesarthrocarpus_Contig10152.1.1|Name=mRNA_D-mesarthrocarpus_Contig10152.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=381bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10152:2644..3571+ (Discosporangium mesarthrocarpum MT17_79) back to top