mRNA_D-mesarthrocarpus_Contig10152.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10152.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10152.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10152.1.1 vs. uniprot
Match: D7FQ90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ90_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 3.840e-29
Identity = 53/77 (68.83%), Postives = 68/77 (88.31%), Query Frame = 1 
Query:    1 PSLQLQPDVVSYTSAIHACSGPNGNWEKAYYQLLDKMWQ-VTGARPNKVSYDLVMQACGHGGEWELGVALLEDMREV 228
            P+ +++PDV+S+TSAIHAC+GP GNWEKAY QLLD MWQ   GA+P+K +YDLV+QACGHGGEWELGV L++DMR++
Sbjct:    2 PAAKVKPDVISFTSAIHACAGPTGNWEKAY-QLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDL 77
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BLAST of mRNA_D-mesarthrocarpus_Contig10152.1.1 vs. uniprot
Match: A0A6H5L2A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A2_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.320e-18
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:    1 PSLQLQPDVVSYTSAIHACSGPNGNWEKAYYQLLDKMWQ-VTGARPNKVSYDLVMQACGHGGEWELGVALLEDMREV 228
            P+ +++             +GP GNWEKAY QLLD MWQ   GA+P+K +YDLV+QACGHGGEWELGV L++DMR++
Sbjct:  419 PAAKVKXXXXXXXXXXXXXAGPTGNWEKAY-QLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDL 494
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BLAST of mRNA_D-mesarthrocarpus_Contig10152.1.1 vs. uniprot
Match: A0A7S0LID2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LID2_9EUKA)

HSP 1 Score: 52.8 bits (125), Expect = 8.090e-6
Identity = 27/63 (42.86%), Postives = 35/63 (55.56%), Query Frame = 1 
Query:    4 SLQLQPDVVSYTSAIHACSGPNGNWEKAYYQLLDKMWQVTGARPNKVSYDLVMQACGHGGEWE 192
            S ++ PDVVSY +AI ACS  + +W     +LL +M    G RPN  +Y     AC  GG WE
Sbjct:   45 SPRMPPDVVSYATAISACSRDSAHWRTGV-ELLRQM-DAVGVRPNVFAYASAASACATGGAWE 105
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10152.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQ90_ECTSI3.840e-2968.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2A2_9PHAE1.320e-1854.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0LID2_9EUKA8.090e-642.86Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10152contigD-mesarthrocarpus_Contig10152:2644..3571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FQ90
Model size381
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.29e-30
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Descriptionendonuclease activity
Cds size381
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.0894463-CDS-D-mesarthrocarpus_Contig10152:2643..27361680789159.0894463-CDS-D-mesarthrocarpus_Contig10152:2643..2736Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10152 2644..2736 +
1680789159.1007373-CDS-D-mesarthrocarpus_Contig10152:3283..35711680789159.1007373-CDS-D-mesarthrocarpus_Contig10152:3283..3571Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10152 3284..3571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10152.1.1prot_D-mesarthrocarpus_Contig10152.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10152 2644..3571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10152.1.1

>prot_D-mesarthrocarpus_Contig10152.1.1 ID=prot_D-mesarthrocarpus_Contig10152.1.1|Name=mRNA_D-mesarthrocarpus_Contig10152.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=127bp
PSLQLQPDVVSYTSAIHACSGPNGNWEKAYYQLLDKMWQVTGARPNKVSY
DLVMQACGHGGEWELGVALLEDMREVGATPDLQSFNIAVSACARCGEWKE
AFLLVGLMRRAGVVPDAFTYSALIHG*
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mRNA from alignment at D-mesarthrocarpus_Contig10152:2644..3571+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10152.1.1 ID=mRNA_D-mesarthrocarpus_Contig10152.1.1|Name=mRNA_D-mesarthrocarpus_Contig10152.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=928bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10152:2644..3571+ (Discosporangium mesarthrocarpum MT17_79)
CCCTCCTTGCAGTTACAACCGGATGTGGTCTCCTACACGTCTGCCATTCA
TGCCTGTTCTGGCCCAAATGGAAACTGGGAGAAGGCGTATTACGTGAGCG
AGTGGGGGGGGGACTCATGCAACCCTAACCCTAACCCTAACCCTAACCCC
AACCCCAACCCTAACCCCAACCCCAACCCTAACCCTAACCCTAACCCTAA
CCCTACAGTACTTCGCACACTCCAGAGTAGAGCCTTGCAAGGGCAACTCA
CACCTCCACACAGCCCGAACCCAAACCAGCACACCTCCCACCCACCCACC
CACCCCGCCTGCCCACTCCAGCTCAAGATCCCCTGGAACCAAACGTGAAC
CCTCTCTCATCCCTCCTTCCTATGAGTGCACGGACGTCCCTGACCCTAAC
CCTATCCCTGATCCTTGCCCTAGCCCTAGCCCTAGCCCTTGCTCTAACCG
TAGCCCTAACCCTTGCCCTAACCCTTGCCCTAACCCTTGCCCTAACCATA
GCGCTATCCCTACTAAGCCTGACCCCAACCCCCTGTGTGTGCCTGAACTC
CTGTGCGCCTCCGGCACCTCGATTGTCGGGGATTTATTTCCAATAACGGG
TAAAAAAAACGCCAAAAAAAACTACGACTCCGAAATCAAGCAGCTCCTAG
ACAAGATGTGGCAGGTGACCGGGGCCCGCCCAAACAAGGTCTCTTATGAC
CTGGTGATGCAGGCGTGTGGTCACGGCGGGGAGTGGGAGCTCGGGGTGGC
CCTCCTGGAGGACATGCGGGAGGTGGGGGCCACACCAGACCTGCAGTCCT
TCAACATTGCCGTCTCAGCATGCGCCCGCTGTGGCGAGTGGAAGGAGGCG
TTCTTGCTGGTGGGGCTCATGCGTAGGGCTGGGGTTGTCCCAGATGCATT
CACGTACTCAGCCCTGATCCACGGGTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10152:2644..3571+

>mRNA_D-mesarthrocarpus_Contig10152.1.1 ID=mRNA_D-mesarthrocarpus_Contig10152.1.1|Name=mRNA_D-mesarthrocarpus_Contig10152.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=381bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10152:2644..3571+ (Discosporangium mesarthrocarpum MT17_79)
CCCTCCTTGCAGTTACAACCGGATGTGGTCTCCTACACGTCTGCCATTCA
TGCCTGTTCTGGCCCAAATGGAAACTGGGAGAAGGCGTATTACCAGCTCC
TAGACAAGATGTGGCAGGTGACCGGGGCCCGCCCAAACAAGGTCTCTTAT
GACCTGGTGATGCAGGCGTGTGGTCACGGCGGGGAGTGGGAGCTCGGGGT
GGCCCTCCTGGAGGACATGCGGGAGGTGGGGGCCACACCAGACCTGCAGT
CCTTCAACATTGCCGTCTCAGCATGCGCCCGCTGTGGCGAGTGGAAGGAG
GCGTTCTTGCTGGTGGGGCTCATGCGTAGGGCTGGGGTTGTCCCAGATGC
ATTCACGTACTCAGCCCTGATCCACGGGTGA
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