Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10135.3.1 vs. uniprot
Match:
D8LEI8_ECTSI (Ubiquinol cytochrome c reductase subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI8_ECTSI)
HSP 1 Score: 61.2 bits (147), Expect = 1.900e-11
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 1
Query: 28 QACAGRVNAKGFGTCEPWFFDYLKCVDKCVS 120
+AC RV +KGFGTCEPWFFDY+ CVDKC +
Sbjct: 31 KACVERVTSKGFGTCEPWFFDYISCVDKCAA 61
BLAST of mRNA_D-mesarthrocarpus_Contig10135.3.1 vs. uniprot
Match:
A0A6H5K2B5_9PHAE (UCR_hinge domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B5_9PHAE)
HSP 1 Score: 60.1 bits (144), Expect = 5.460e-11
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 1
Query: 28 QACAGRVNAKGFGTCEPWFFDYLKCVDKCVS 120
+AC RV +KGFGTCEPWFFDY+ CVDKC +
Sbjct: 31 KACVERVISKGFGTCEPWFFDYISCVDKCAA 61
BLAST of mRNA_D-mesarthrocarpus_Contig10135.3.1 vs. uniprot
Match:
A0A482RA26_9ARCH (UCR_hinge domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RA26_9ARCH)
HSP 1 Score: 53.9 bits (128), Expect = 9.700e-8
Identity = 20/30 (66.67%), Postives = 24/30 (80.00%), Query Frame = 1
Query: 28 QACAGRVNAKGFGTCEPWFFDYLKCVDKCV 117
+AC R+ AKG G+CEPW FDY +CVDKCV
Sbjct: 39 EACKERIAAKGTGSCEPWAFDYWRCVDKCV 68
BLAST of mRNA_D-mesarthrocarpus_Contig10135.3.1 vs. uniprot
Match:
A0A225V9I9_9STRA (Cytochrome b-c1 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V9I9_9STRA)
HSP 1 Score: 50.8 bits (120), Expect = 2.100e-7
Identity = 19/30 (63.33%), Postives = 24/30 (80.00%), Query Frame = 1
Query: 28 QACAGRVNAKGFGTCEPWFFDYLKCVDKCV 117
QAC RVNAKG G+C+ +FD+L C+DKCV
Sbjct: 20 QACLDRVNAKGVGSCDGQYFDFLHCIDKCV 49
BLAST of mRNA_D-mesarthrocarpus_Contig10135.3.1 vs. uniprot
Match:
F0XZK5_AURAN (UCR_hinge domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZK5_AURAN)
HSP 1 Score: 49.3 bits (116), Expect = 9.600e-7
Identity = 17/29 (58.62%), Postives = 23/29 (79.31%), Query Frame = 1
Query: 31 ACAGRVNAKGFGTCEPWFFDYLKCVDKCV 117
+C R+ AKG G CEP++FD+LKC+DKC
Sbjct: 30 SCVDRIEAKGGGDCEPYYFDWLKCLDKCA 58
BLAST of mRNA_D-mesarthrocarpus_Contig10135.3.1 vs. uniprot
Match:
W2IU60_PHYPR (Cytochrome b-c1 complex subunit 6 n=18 Tax=Phytophthora TaxID=4783 RepID=W2IU60_PHYPR)
HSP 1 Score: 46.6 bits (109), Expect = 1.120e-5
Identity = 17/29 (58.62%), Postives = 22/29 (75.86%), Query Frame = 1
Query: 28 QACAGRVNAKGFGTCEPWFFDYLKCVDKC 114
QAC RV AKG G+C+ +FD+L C+DKC
Sbjct: 29 QACLDRVKAKGVGSCDGQYFDFLHCIDKC 57
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10135.3.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 6
0 1 Expect = 1.90e-11 / Id = 70.97 Expect = 5.46e-11 / Id = 70.97 Expect = 9.70e-8 / Id = 66.67 Expect = 2.10e-7 / Id = 63.33 Expect = 9.60e-7 / Id = 58.62 Expect = 1.12e-5 / Id = 58.62 Sequence D8LEI8_ECTSI A0A6H5K2B5_9PHAE A0A482RA26_9ARCH A0A225V9I9_9STRA F0XZK5_AURAN W2IU60_PHYPR back to top
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10135.3.1
>prot_D-mesarthrocarpus_Contig10135.3.1 ID=prot_D-mesarthrocarpus_Contig10135.3.1|Name=mRNA_D-mesarthrocarpus_Contig10135.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=41bp
MPSLFLTFPQACAGRVNAKGFGTCEPWFFDYLKCVDKCVSA back to top mRNA from alignment at D-mesarthrocarpus_Contig10135:4108..4230-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10135.3.1 ID=mRNA_D-mesarthrocarpus_Contig10135.3.1|Name=mRNA_D-mesarthrocarpus_Contig10135.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=123bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10135:4108..4230- (Discosporangium mesarthrocarpum MT17_79)ATGCCTTCTCTCTTTCTCACTTTCCCACAGGCTTGTGCTGGAAGGGTGAA
TGCCAAGGGTTTTGGTACCTGCGAGCCATGGTTCTTTGACTACCTCAAGT
GTGTTGACAAATGTGTGAGTGCT back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10135:4108..4230-
>mRNA_D-mesarthrocarpus_Contig10135.3.1 ID=mRNA_D-mesarthrocarpus_Contig10135.3.1|Name=mRNA_D-mesarthrocarpus_Contig10135.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=123bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10135:4108..4230- (Discosporangium mesarthrocarpum MT17_79) back to top