mRNA_D-mesarthrocarpus_Contig10135.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10135.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig10135.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10135.3.1 vs. uniprot
Match: D8LEI8_ECTSI (Ubiquinol cytochrome c reductase subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI8_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.900e-11
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:   28 QACAGRVNAKGFGTCEPWFFDYLKCVDKCVS 120
            +AC  RV +KGFGTCEPWFFDY+ CVDKC +
Sbjct:   31 KACVERVTSKGFGTCEPWFFDYISCVDKCAA 61
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BLAST of mRNA_D-mesarthrocarpus_Contig10135.3.1 vs. uniprot
Match: A0A6H5K2B5_9PHAE (UCR_hinge domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B5_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 5.460e-11
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:   28 QACAGRVNAKGFGTCEPWFFDYLKCVDKCVS 120
            +AC  RV +KGFGTCEPWFFDY+ CVDKC +
Sbjct:   31 KACVERVISKGFGTCEPWFFDYISCVDKCAA 61
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BLAST of mRNA_D-mesarthrocarpus_Contig10135.3.1 vs. uniprot
Match: A0A482RA26_9ARCH (UCR_hinge domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RA26_9ARCH)

HSP 1 Score: 53.9 bits (128), Expect = 9.700e-8
Identity = 20/30 (66.67%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:   28 QACAGRVNAKGFGTCEPWFFDYLKCVDKCV 117
            +AC  R+ AKG G+CEPW FDY +CVDKCV
Sbjct:   39 EACKERIAAKGTGSCEPWAFDYWRCVDKCV 68
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BLAST of mRNA_D-mesarthrocarpus_Contig10135.3.1 vs. uniprot
Match: A0A225V9I9_9STRA (Cytochrome b-c1 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V9I9_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.100e-7
Identity = 19/30 (63.33%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:   28 QACAGRVNAKGFGTCEPWFFDYLKCVDKCV 117
            QAC  RVNAKG G+C+  +FD+L C+DKCV
Sbjct:   20 QACLDRVNAKGVGSCDGQYFDFLHCIDKCV 49
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BLAST of mRNA_D-mesarthrocarpus_Contig10135.3.1 vs. uniprot
Match: F0XZK5_AURAN (UCR_hinge domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZK5_AURAN)

HSP 1 Score: 49.3 bits (116), Expect = 9.600e-7
Identity = 17/29 (58.62%), Postives = 23/29 (79.31%), Query Frame = 1 
Query:   31 ACAGRVNAKGFGTCEPWFFDYLKCVDKCV 117
            +C  R+ AKG G CEP++FD+LKC+DKC 
Sbjct:   30 SCVDRIEAKGGGDCEPYYFDWLKCLDKCA 58
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BLAST of mRNA_D-mesarthrocarpus_Contig10135.3.1 vs. uniprot
Match: W2IU60_PHYPR (Cytochrome b-c1 complex subunit 6 n=18 Tax=Phytophthora TaxID=4783 RepID=W2IU60_PHYPR)

HSP 1 Score: 46.6 bits (109), Expect = 1.120e-5
Identity = 17/29 (58.62%), Postives = 22/29 (75.86%), Query Frame = 1 
Query:   28 QACAGRVNAKGFGTCEPWFFDYLKCVDKC 114
            QAC  RV AKG G+C+  +FD+L C+DKC
Sbjct:   29 QACLDRVKAKGVGSCDGQYFDFLHCIDKC 57
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10135.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LEI8_ECTSI1.900e-1170.97Ubiquinol cytochrome c reductase subunit 6 n=1 Tax... [more]
A0A6H5K2B5_9PHAE5.460e-1170.97UCR_hinge domain-containing protein n=1 Tax=Ectoca... [more]
A0A482RA26_9ARCH9.700e-866.67UCR_hinge domain-containing protein n=1 Tax=archae... [more]
A0A225V9I9_9STRA2.100e-763.33Cytochrome b-c1 n=1 Tax=Phytophthora megakarya Tax... [more]
F0XZK5_AURAN9.600e-758.62UCR_hinge domain-containing protein n=1 Tax=Aureoc... [more]
W2IU60_PHYPR1.120e-558.62Cytochrome b-c1 complex subunit 6 n=18 Tax=Phytoph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10135contigD-mesarthrocarpus_Contig10135:4108..4230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog36331.EPrPI00000018694
PFAMsUCR_hinge
Model size123
Max annot lvl121069|Pythiales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.11e-07
EggNOG OGsKOG4763@1|root,KOG4763@2759|Eukaryota,1MHVJ@121069|Pythiales
Ec32 ortholog descriptionubiquinol cytochrome c reductase subunit 6
Ec32 orthologEc-21_004500.1
DescriptionSource PGD
Cds size123
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789158.017766-CDS-D-mesarthrocarpus_Contig10135:4107..42301680789158.017766-CDS-D-mesarthrocarpus_Contig10135:4107..4230Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10135 4108..4230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10135.3.1prot_D-mesarthrocarpus_Contig10135.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10135 4108..4230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10135.3.1

>prot_D-mesarthrocarpus_Contig10135.3.1 ID=prot_D-mesarthrocarpus_Contig10135.3.1|Name=mRNA_D-mesarthrocarpus_Contig10135.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=41bp
MPSLFLTFPQACAGRVNAKGFGTCEPWFFDYLKCVDKCVSA
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mRNA from alignment at D-mesarthrocarpus_Contig10135:4108..4230-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10135.3.1 ID=mRNA_D-mesarthrocarpus_Contig10135.3.1|Name=mRNA_D-mesarthrocarpus_Contig10135.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=123bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10135:4108..4230- (Discosporangium mesarthrocarpum MT17_79)
ATGCCTTCTCTCTTTCTCACTTTCCCACAGGCTTGTGCTGGAAGGGTGAA
TGCCAAGGGTTTTGGTACCTGCGAGCCATGGTTCTTTGACTACCTCAAGT
GTGTTGACAAATGTGTGAGTGCT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10135:4108..4230-

>mRNA_D-mesarthrocarpus_Contig10135.3.1 ID=mRNA_D-mesarthrocarpus_Contig10135.3.1|Name=mRNA_D-mesarthrocarpus_Contig10135.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=123bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10135:4108..4230- (Discosporangium mesarthrocarpum MT17_79)
ATGCCTTCTCTCTTTCTCACTTTCCCACAGGCTTGTGCTGGAAGGGTGAA
TGCCAAGGGTTTTGGTACCTGCGAGCCATGGTTCTTTGACTACCTCAAGT
GTGTTGACAAATGTGTGAGTGCT
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