mRNA_D-dudresnayi_contig982.28623.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig982.28623.1
Unique NamemRNA_D-dudresnayi_contig982.28623.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig982.28623.1 vs. uniprot
Match: A0A448ZAU0_9STRA (Tr-type G domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZAU0_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 8.500e-8
Identity = 37/101 (36.63%), Postives = 57/101 (56.44%), Query Frame = 1 
Query:   16 YIQGTAKVLKVYTFSGARAQV-VAGLQVISGRL-RTKTSNSASDSTSSGYVYRITRNGKVVLPESRSDT--ELKRMKATVNEVENGLECGLTLSGYSDFQE 306
            +  G AKV  +++      +  +AGL V+ G + R K     SD+      +R+ RNG+++ P+  S T   L++ K TV  V+ G ECGL LSG+SDF+E
Sbjct:  956 HTHGRAKVKAIFSIDTEDGEERIAGLNVLDGNMYRAKGPAGGSDTIDLPSHFRVYRNGELISPDDESVTASSLRKFKETVESVKLGEECGLGLSGFSDFEE 1056
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BLAST of mRNA_D-dudresnayi_contig982.28623.1 vs. uniprot
Match: A0A1E7ER04_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ER04_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.190e-5
Identity = 35/101 (34.65%), Postives = 57/101 (56.44%), Query Frame = 1 
Query:   16 YIQGTAKVLKVYTFSGARA-QVVAGLQVISGRL-RTKTSNSASDSTSSGYVYRITRNGKVVLP--ESRSDTELKRMKATVNEVENGLECGLTLSGYSDFQE 306
            +  G A V  V+T       + VAGL V++G + ++K     S +T     +R+ R+ +++ P  ES + + L+R K  V+ V  G ECGL LSG++DF+E
Sbjct:  453 HTHGRASVKAVFTIGTINGDEKVAGLNVMNGNIYKSKAPAGDSSTTDLDCHFRVYRDSQLISPVGESVTASSLRRFKELVDSVRLGDECGLALSGFTDFEE 553
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BLAST of mRNA_D-dudresnayi_contig982.28623.1 vs. uniprot
Match: A0A2E6T143_9BACT (Translation initiation factor IF-2 n=2 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E6T143_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 7.900e-5
Identity = 39/97 (40.21%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:   19 IQGTAKVLKVYTFSGARAQVVAGLQVISGRL-RTKTSNSASDSTSSGYVYRITRNGKVVLPESRSDTELKRMKATVNEVENGLECGLTLSGYSDFQE 306
            + G A+V K++  S  +   VAG  VISG++ R K               R+ R G +V  E  S T LKR K  VNEV +G+ECG+ L G+ DFQE
Sbjct:  670 VTGQAEVRKIFELS--KGGNVAGCAVISGKIVRGK--------------MRVVRKGNLVY-EGISHT-LKRFKDEVNEVRSGMECGIRLDGFDDFQE 748
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig982.28623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A448ZAU0_9STRA8.500e-836.63Tr-type G domain-containing protein n=1 Tax=Pseudo... [more]
A0A1E7ER04_9STRA1.190e-534.65p-loop containing nucleoside triphosphate hydrolas... [more]
A0A2E6T143_9BACT7.900e-540.21Translation initiation factor IF-2 n=2 Tax=Verruco... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig982contigD-dudresnayi_contig982:2018..2457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size307
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930939.0789533-CDS-D-dudresnayi_contig982:2017..20741622930939.0789533-CDS-D-dudresnayi_contig982:2017..2074Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig982 2018..2074 -
1690557972.8720129-CDS-D-dudresnayi_contig982:2017..20741690557972.8720129-CDS-D-dudresnayi_contig982:2017..2074Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig982 2018..2074 -
1622930939.1004117-CDS-D-dudresnayi_contig982:2208..24571622930939.1004117-CDS-D-dudresnayi_contig982:2208..2457Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig982 2209..2457 -
1690557972.8833394-CDS-D-dudresnayi_contig982:2208..24571690557972.8833394-CDS-D-dudresnayi_contig982:2208..2457Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig982 2209..2457 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig982.28623.1prot_D-dudresnayi_contig982.28623.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig982 2018..2457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig982.28623.1

>prot_D-dudresnayi_contig982.28623.1 ID=prot_D-dudresnayi_contig982.28623.1|Name=mRNA_D-dudresnayi_contig982.28623.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=102bp
MLSCVYIQGTAKVLKVYTFSGARAQVVAGLQVISGRLRTKTSNSASDSTS
SGYVYRITRNGKVVLPESRSDTELKRMKATVNEVENGLECGLTLSGYSDF
QE
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mRNA from alignment at D-dudresnayi_contig982:2018..2457-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig982.28623.1 ID=mRNA_D-dudresnayi_contig982.28623.1|Name=mRNA_D-dudresnayi_contig982.28623.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=440bp|location=Sequence derived from alignment at D-dudresnayi_contig982:2018..2457- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTGTCATGTGTATATATACAGGGTACTGCGAAGGTGTTGAAGGTATA
TACATTCAGTGGTGCCCGTGCTCAAGTTGTCGCTGGACTGCAGGTGATCT
CTGGTCGGTTGCGCACAAAAACAAGTAACAGCGCCTCTGATAGTACTAGT
AGTGGTTATGTCTATCGCATTACTCGCAATGGTAAAGTCGTCTTACCGGA
GAGTCGCAGTGATACTGAGCTAAAGCGCATGAAGGCGACTGTTAATGAGG
TACGATCTTACCAACTATCTATCATATATGATTATATACGTATCACGTAT
GCGAATATGACACTATTCCCTTACTAACTTACCTCACTGACTCACTCTAC
TGTACTGTACTTATCTTGTTGTCTGCACTGCAGGTGGAGAACGGCTTGGA
GTGCGGGCTAACCCTCTCCGGCTACAGCGACTTCCAGGAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig982:2018..2457-

>mRNA_D-dudresnayi_contig982.28623.1 ID=mRNA_D-dudresnayi_contig982.28623.1|Name=mRNA_D-dudresnayi_contig982.28623.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at D-dudresnayi_contig982:2018..2457- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTGTCATGTGTATATATACAGGGTACTGCGAAGGTGTTGAAGGTATA
TACATTCAGTGGTGCCCGTGCTCAAGTTGTCGCTGGACTGCAGGTGATCT
CTGGTCGGTTGCGCACAAAAACAAGTAACAGCGCCTCTGATAGTACTAGT
AGTGGTTATGTCTATCGCATTACTCGCAATGGTAAAGTCGTCTTACCGGA
GAGTCGCAGTGATACTGAGCTAAAGCGCATGAAGGCGACTGTTAATGAGA
TGTTGTCATGTGTATATATACAGGGTACTGCGAAGGTGTTGAAGGTATAT
ACATTCAGTGGTGCCCGTGCTCAAGTTGTCGCTGGACTGCAGGTGATCTC
TGGTCGGTTGCGCACAAAAACAAGTAACAGCGCCTCTGATAGTACTAGTA
GTGGTTATGTCTATCGCATTACTCGCAATGGTAAAGTCGTCTTACCGGAG
AGTCGCAGTGATACTGAGCTAAAGCGCATGAAGGCGACTGTTAATGAGGT
GGAGAACGGCTTGGAGTGCGGGCTAACCCTCTCCGGCTACAGCGACTTCC
AGGAGGTGGAGAACGGCTTGGAGTGCGGGCTAACCCTCTCCGGCTACAGC
GACTTCCAGGAG
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