prot_C-australica_Contig_1028.1.1 (polypeptide) Chrysoparadoxa australica CS_1217

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-australica_Contig_1028.1.1
Unique Nameprot_C-australica_Contig_1028.1.1
Typepolypeptide
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Sequence length168
Homology
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BLAST of mRNA_C-australica_Contig_1028.1.1 vs. uniprot
Match: A0A835ZDW7_9STRA (Bromo domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW7_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.130e-16
Identity = 37/92 (40.22%), Postives = 59/92 (64.13%), Query Frame = 0 
Query:   43 FDLYDGSGTEKMRILDSFALYTLDGKPVPLEALDRVKQGENFVGFGTVVEPLSDDASARLEQLENKMRGKMPSCTPREDSHTAVQLSAMKAV 134
            +D+Y+  GT+K+R+LD+FALYT DGK VP E +D+VK G   + +GT VE + +D   R+  L +K +G+ P C P   + ++   +  KA+
Sbjct:   43 YDMYEAGGTDKLRLLDNFALYTHDGKMVPFEDIDKVKDGVPLIAYGTCVESICEDGRQRVSLLHSKTKGRPPPCVPIPRADSSSSTNGTKAL 134
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1028.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZDW7_9STRA3.130e-1640.22Bromo domain-containing protein n=1 Tax=Tribonema ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..168
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1028contigC-australica_Contig_1028:958..1754 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1028.1.1mRNA_C-australica_Contig_1028.1.1Chrysoparadoxa australica CS_1217mRNAC-australica_Contig_1028 958..1754 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-australica_Contig_1028.1.1 ID=prot_C-australica_Contig_1028.1.1|Name=mRNA_C-australica_Contig_1028.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=168bp
MYLNSSSCLGRQEARLRDADPLAQGGSGAEDEEAEDGPGLHEFDLYDGSG
TEKMRILDSFALYTLDGKPVPLEALDRVKQGENFVGFGTVVEPLSDDASA
RLEQLENKMRGKMPSCTPREDSHTAVQLSAMKAVFGDSDDELEGGLDSKK
ARGEMQQGPVKTSGLKLT
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