mRNA_C-australica_Contig_9849.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9849.1.1
Unique NamemRNA_C-australica_Contig_9849.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
[Close]
BLAST of mRNA_C-australica_Contig_9849.1.1 vs. uniprot
Match: A0A222E6Y3_9RHOB (Serine protease n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E6Y3_9RHOB)

HSP 1 Score: 89.4 bits (220), Expect = 1.140e-19
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 GGTTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR 129
            GGTTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR
Sbjct:  825 GGTTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR 867
[Close]
BLAST of mRNA_C-australica_Contig_9849.1.1 vs. uniprot
Match: A0A239FJH9_9RHOB (Serine protease n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239FJH9_9RHOB)

HSP 1 Score: 88.2 bits (217), Expect = 2.910e-19
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 GGTTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR 129
            GGTTRAIQQELVARGYL+DRDVDGAFGPTTRRALERLVAAAGR
Sbjct:  825 GGTTRAIQQELVARGYLTDRDVDGAFGPTTRRALERLVAAAGR 867
[Close]
BLAST of mRNA_C-australica_Contig_9849.1.1 vs. uniprot
Match: UPI001C94780C (trypsin-like peptidase domain-containing protein n=3 Tax=Rhodobacterales TaxID=204455 RepID=UPI001C94780C)

HSP 1 Score: 67.0 bits (162), Expect = 8.210e-12
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    7 TTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR 129
            TTR IQ++LVARGYL   DVDGAFGPTTR ALERLVAAA R
Sbjct:  823 TTREIQRDLVARGYLRPGDVDGAFGPTTRGALERLVAAAPR 863
[Close]
BLAST of mRNA_C-australica_Contig_9849.1.1 vs. uniprot
Match: A0A0B3SBX0_9RHOB (Serine protease n=7 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0B3SBX0_9RHOB)

HSP 1 Score: 61.6 bits (148), Expect = 6.520e-10
Identity = 30/41 (73.17%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    7 TTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR 129
            TTR IQ+ELV RGYL    VDGAFGPTTR ALERL  A+GR
Sbjct:  820 TTREIQRELVRRGYLGAGQVDGAFGPTTRGALERLQKASGR 860
[Close]
BLAST of mRNA_C-australica_Contig_9849.1.1 vs. uniprot
Match: UPI001C5E1E99 (trypsin-like peptidase domain-containing protein n=1 Tax=Mameliella sp. CS4 TaxID=2862329 RepID=UPI001C5E1E99)

HSP 1 Score: 60.5 bits (145), Expect = 1.670e-9
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    7 TTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR 129
            TTR IQ++LV RGYL    VDGAFGPTTR ALERL+ AA R
Sbjct:  820 TTREIQRDLVRRGYLGAGQVDGAFGPTTRGALERLLQAAAR 860
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9849.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A222E6Y3_9RHOB1.140e-19100.00Serine protease n=2 Tax=Roseobacteraceae TaxID=285... [more]
A0A239FJH9_9RHOB2.910e-1997.67Serine protease n=1 Tax=Antarctobacter heliothermu... [more]
UPI001C94780C8.210e-1280.49trypsin-like peptidase domain-containing protein n... [more]
A0A0B3SBX0_9RHOB6.520e-1073.17Serine protease n=7 Tax=Roseobacteraceae TaxID=285... [more]
UPI001C5E1E991.670e-970.73trypsin-like peptidase domain-containing protein n... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9849contigC-australica_Contig_9849:199..330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size132
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588851.7656925-CDS-C-australica_Contig_9849:198..3301682588851.7656925-CDS-C-australica_Contig_9849:198..330Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9849 199..330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9849.1.1prot_C-australica_Contig_9849.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9849 199..330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9849.1.1

>prot_C-australica_Contig_9849.1.1 ID=prot_C-australica_Contig_9849.1.1|Name=mRNA_C-australica_Contig_9849.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=44bp
GGTTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR*
back to top

mRNA from alignment at C-australica_Contig_9849:199..330+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9849.1.1 ID=mRNA_C-australica_Contig_9849.1.1|Name=mRNA_C-australica_Contig_9849.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=132bp|location=Sequence derived from alignment at C-australica_Contig_9849:199..330+ (Chrysoparadoxa australica CS_1217)
GGCGGGACAACGCGGGCCATCCAACAAGAGCTGGTGGCGCGCGGTTACCT
GTCGGATCGCGACGTCGACGGCGCCTTTGGCCCAACGACACGGCGCGCAC
TGGAACGGCTGGTCGCCGCCGCGGGGCGCTGA
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_9849:199..330+

>mRNA_C-australica_Contig_9849.1.1 ID=mRNA_C-australica_Contig_9849.1.1|Name=mRNA_C-australica_Contig_9849.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=132bp|location=Sequence derived from alignment at C-australica_Contig_9849:199..330+ (Chrysoparadoxa australica CS_1217)
GGCGGGACAACGCGGGCCATCCAACAAGAGCTGGTGGCGCGCGGTTACCT
GTCGGATCGCGACGTCGACGGCGCCTTTGGCCCAACGACACGGCGCGCAC
TGGAACGGCTGGTCGCCGCCGCGGGGCGCTGA
back to top