Homology
BLAST of mRNA_C-australica_Contig_9849.1.1 vs. uniprot
Match:
A0A222E6Y3_9RHOB (Serine protease n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E6Y3_9RHOB)
HSP 1 Score: 89.4 bits (220), Expect = 1.140e-19
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1
Query: 1 GGTTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR 129
GGTTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR
Sbjct: 825 GGTTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR 867
BLAST of mRNA_C-australica_Contig_9849.1.1 vs. uniprot
Match:
A0A239FJH9_9RHOB (Serine protease n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239FJH9_9RHOB)
HSP 1 Score: 88.2 bits (217), Expect = 2.910e-19
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1
Query: 1 GGTTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR 129
GGTTRAIQQELVARGYL+DRDVDGAFGPTTRRALERLVAAAGR
Sbjct: 825 GGTTRAIQQELVARGYLTDRDVDGAFGPTTRRALERLVAAAGR 867
BLAST of mRNA_C-australica_Contig_9849.1.1 vs. uniprot
Match:
UPI001C94780C (trypsin-like peptidase domain-containing protein n=3 Tax=Rhodobacterales TaxID=204455 RepID=UPI001C94780C)
HSP 1 Score: 67.0 bits (162), Expect = 8.210e-12
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 1
Query: 7 TTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR 129
TTR IQ++LVARGYL DVDGAFGPTTR ALERLVAAA R
Sbjct: 823 TTREIQRDLVARGYLRPGDVDGAFGPTTRGALERLVAAAPR 863
BLAST of mRNA_C-australica_Contig_9849.1.1 vs. uniprot
Match:
A0A0B3SBX0_9RHOB (Serine protease n=7 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0B3SBX0_9RHOB)
HSP 1 Score: 61.6 bits (148), Expect = 6.520e-10
Identity = 30/41 (73.17%), Postives = 32/41 (78.05%), Query Frame = 1
Query: 7 TTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR 129
TTR IQ+ELV RGYL VDGAFGPTTR ALERL A+GR
Sbjct: 820 TTREIQRELVRRGYLGAGQVDGAFGPTTRGALERLQKASGR 860
BLAST of mRNA_C-australica_Contig_9849.1.1 vs. uniprot
Match:
UPI001C5E1E99 (trypsin-like peptidase domain-containing protein n=1 Tax=Mameliella sp. CS4 TaxID=2862329 RepID=UPI001C5E1E99)
HSP 1 Score: 60.5 bits (145), Expect = 1.670e-9
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 1
Query: 7 TTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR 129
TTR IQ++LV RGYL VDGAFGPTTR ALERL+ AA R
Sbjct: 820 TTREIQRDLVRRGYLGAGQVDGAFGPTTRGALERLLQAAAR 860
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9849.1.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 5
0 1 Expect = 1.14e-19 / Id = 100.00 Expect = 2.91e-19 / Id = 97.67 Expect = 8.21e-12 / Id = 80.49 Expect = 6.52e-10 / Id = 73.17 Expect = 1.67e-9 / Id = 70.73 Sequence A0A222E6Y3_9RHOB A0A239FJH9_9RHOB UPI001C94780C A0A0B3SBX0_9RHOB UPI001C5E1E99 back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 0 Model size 132 Hectar predicted targeting category no signal peptide or anchor Exons 1 Cds size 132
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682588851.7656925-CDS-C-australica_Contig_9849:198..330 1682588851.7656925-CDS-C-australica_Contig_9849:198..330 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_9849 199..330 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_9849.1.1
>prot_C-australica_Contig_9849.1.1 ID=prot_C-australica_Contig_9849.1.1|Name=mRNA_C-australica_Contig_9849.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=44bp
GGTTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR* back to top mRNA from alignment at C-australica_Contig_9849:199..330+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9849.1.1 ID=mRNA_C-australica_Contig_9849.1.1|Name=mRNA_C-australica_Contig_9849.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=132bp|location=Sequence derived from alignment at C-australica_Contig_9849:199..330+ (Chrysoparadoxa australica CS_1217)GGCGGGACAACGCGGGCCATCCAACAAGAGCTGGTGGCGCGCGGTTACCT
GTCGGATCGCGACGTCGACGGCGCCTTTGGCCCAACGACACGGCGCGCAC
TGGAACGGCTGGTCGCCGCCGCGGGGCGCTGA back to top Coding sequence (CDS) from alignment at C-australica_Contig_9849:199..330+
>mRNA_C-australica_Contig_9849.1.1 ID=mRNA_C-australica_Contig_9849.1.1|Name=mRNA_C-australica_Contig_9849.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=132bp|location=Sequence derived from alignment at C-australica_Contig_9849:199..330+ (Chrysoparadoxa australica CS_1217) back to top