mRNA_C-australica_Contig_9849.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_9849.1.1 vs. uniprot
Match: A0A222E6Y3_9RHOB (Serine protease n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E6Y3_9RHOB) HSP 1 Score: 89.4 bits (220), Expect = 1.140e-19 Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 Query: 1 GGTTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR 129
GGTTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR
Sbjct: 825 GGTTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR 867
BLAST of mRNA_C-australica_Contig_9849.1.1 vs. uniprot
Match: A0A239FJH9_9RHOB (Serine protease n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239FJH9_9RHOB) HSP 1 Score: 88.2 bits (217), Expect = 2.910e-19 Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 Query: 1 GGTTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR 129
GGTTRAIQQELVARGYL+DRDVDGAFGPTTRRALERLVAAAGR
Sbjct: 825 GGTTRAIQQELVARGYLTDRDVDGAFGPTTRRALERLVAAAGR 867
BLAST of mRNA_C-australica_Contig_9849.1.1 vs. uniprot
Match: UPI001C94780C (trypsin-like peptidase domain-containing protein n=3 Tax=Rhodobacterales TaxID=204455 RepID=UPI001C94780C) HSP 1 Score: 67.0 bits (162), Expect = 8.210e-12 Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 1 Query: 7 TTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR 129
TTR IQ++LVARGYL DVDGAFGPTTR ALERLVAAA R
Sbjct: 823 TTREIQRDLVARGYLRPGDVDGAFGPTTRGALERLVAAAPR 863
BLAST of mRNA_C-australica_Contig_9849.1.1 vs. uniprot
Match: A0A0B3SBX0_9RHOB (Serine protease n=7 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0B3SBX0_9RHOB) HSP 1 Score: 61.6 bits (148), Expect = 6.520e-10 Identity = 30/41 (73.17%), Postives = 32/41 (78.05%), Query Frame = 1 Query: 7 TTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR 129
TTR IQ+ELV RGYL VDGAFGPTTR ALERL A+GR
Sbjct: 820 TTREIQRELVRRGYLGAGQVDGAFGPTTRGALERLQKASGR 860
BLAST of mRNA_C-australica_Contig_9849.1.1 vs. uniprot
Match: UPI001C5E1E99 (trypsin-like peptidase domain-containing protein n=1 Tax=Mameliella sp. CS4 TaxID=2862329 RepID=UPI001C5E1E99) HSP 1 Score: 60.5 bits (145), Expect = 1.670e-9 Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 1 Query: 7 TTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR 129
TTR IQ++LV RGYL VDGAFGPTTR ALERL+ AA R
Sbjct: 820 TTREIQRDLVRRGYLGAGQVDGAFGPTTRGALERLLQAAAR 860 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9849.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_9849.1.1 >prot_C-australica_Contig_9849.1.1 ID=prot_C-australica_Contig_9849.1.1|Name=mRNA_C-australica_Contig_9849.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=44bp GGTTRAIQQELVARGYLSDRDVDGAFGPTTRRALERLVAAAGR*back to top mRNA from alignment at C-australica_Contig_9849:199..330+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_9849.1.1 ID=mRNA_C-australica_Contig_9849.1.1|Name=mRNA_C-australica_Contig_9849.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=132bp|location=Sequence derived from alignment at C-australica_Contig_9849:199..330+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_9849:199..330+ >mRNA_C-australica_Contig_9849.1.1 ID=mRNA_C-australica_Contig_9849.1.1|Name=mRNA_C-australica_Contig_9849.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=132bp|location=Sequence derived from alignment at C-australica_Contig_9849:199..330+ (Chrysoparadoxa australica CS_1217)back to top |