mRNA_C-australica_Contig_979.4.2 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_979.4.2 vs. uniprot
Match: UPI000B150970 (serine protease inhibitor n=1 Tax=Streptomyces sp. CB00455 TaxID=1703927 RepID=UPI000B150970) HSP 1 Score: 52.0 bits (123), Expect = 1.430e-6 Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 1 Query: 205 GMEAFDAKKQLQGMFPNMIVAVVPEGSMMTMDFNPKRLRCMLGKDGKVM 351
G A +A++Q++ FP + V VVPEGSM+TMDFN +R+R + KDGKV+
Sbjct: 12 GKPAEEAREQIRAEFPEVSVHVVPEGSMVTMDFNEQRVRLFV-KDGKVV 59
BLAST of mRNA_C-australica_Contig_979.4.2 vs. uniprot
Match: A0A0G3UZP2_9ACTN (Uncharacterized protein n=2 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A0G3UZP2_9ACTN) HSP 1 Score: 50.4 bits (119), Expect = 5.650e-6 Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 1 Query: 205 GMEAFDAKKQLQGMFPNMIVAVVPEGSMMTMDFNPKRLRCMLGKDGKVMK 354
G A A++Q+ FP + V V+PEGSM+TMDFN +R+R + KDGKV++
Sbjct: 12 GKPAAQARQQIGAEFPEITVHVLPEGSMVTMDFNEQRVRLFV-KDGKVVR 60
BLAST of mRNA_C-australica_Contig_979.4.2 vs. uniprot
Match: A0A2Z4V536_9ACTN (Uncharacterized protein n=3 Tax=Streptomyces TaxID=1883 RepID=A0A2Z4V536_9ACTN) HSP 1 Score: 50.4 bits (119), Expect = 6.200e-6 Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1 Query: 205 GMEAFDAKKQLQGMFPNMIVAVVPEGSMMTMDFNPKRLRCMLGKDGKVM 351
G A +A +Q+ FP + V VVPEGSM+TMDFN +R+R + KDGKV+
Sbjct: 16 GKSAEEAGRQIGAEFPEITVHVVPEGSMVTMDFNEQRVRLFV-KDGKVV 63
BLAST of mRNA_C-australica_Contig_979.4.2 vs. uniprot
Match: UPI001FAF6776 (serine protease inhibitor n=1 Tax=Streptomyces sp. AP-93 TaxID=2929048 RepID=UPI001FAF6776) HSP 1 Score: 49.7 bits (117), Expect = 1.070e-5 Identity = 24/50 (48.00%), Postives = 36/50 (72.00%), Query Frame = 1 Query: 205 GMEAFDAKKQLQGMFPNMIVAVVPEGSMMTMDFNPKRLRCMLGKDGKVMK 354
G +A++Q+ FP + V VVPEGSM+TMDFN +R+R + +DGKV++
Sbjct: 10 GRPVEEARRQIGAEFPEIAVHVVPEGSMVTMDFNEQRVRLFV-RDGKVVR 58 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_979.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_979.4.2 >prot_C-australica_Contig_979.4.2 ID=prot_C-australica_Contig_979.4.2|Name=mRNA_C-australica_Contig_979.4.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=123bp MRVFPYLLVAAGVTLAAADTREKEHEIEQKLPPGVTLNIDPMVADTLPHIback to top mRNA from alignment at C-australica_Contig_979:10034..10729- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_979.4.2 ID=mRNA_C-australica_Contig_979.4.2|Name=mRNA_C-australica_Contig_979.4.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=696bp|location=Sequence derived from alignment at C-australica_Contig_979:10034..10729- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_979:10034..10729- >mRNA_C-australica_Contig_979.4.2 ID=mRNA_C-australica_Contig_979.4.2|Name=mRNA_C-australica_Contig_979.4.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=369bp|location=Sequence derived from alignment at C-australica_Contig_979:10034..10729- (Chrysoparadoxa australica CS_1217)back to top |