Homology
BLAST of mRNA_C-australica_Contig_979.4.2 vs. uniprot
Match:
UPI000B150970 (serine protease inhibitor n=1 Tax=Streptomyces sp. CB00455 TaxID=1703927 RepID=UPI000B150970)
HSP 1 Score: 52.0 bits (123), Expect = 1.430e-6
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 1
Query: 205 GMEAFDAKKQLQGMFPNMIVAVVPEGSMMTMDFNPKRLRCMLGKDGKVM 351
G A +A++Q++ FP + V VVPEGSM+TMDFN +R+R + KDGKV+
Sbjct: 12 GKPAEEAREQIRAEFPEVSVHVVPEGSMVTMDFNEQRVRLFV-KDGKVV 59
BLAST of mRNA_C-australica_Contig_979.4.2 vs. uniprot
Match:
A0A0G3UZP2_9ACTN (Uncharacterized protein n=2 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A0G3UZP2_9ACTN)
HSP 1 Score: 50.4 bits (119), Expect = 5.650e-6
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query: 205 GMEAFDAKKQLQGMFPNMIVAVVPEGSMMTMDFNPKRLRCMLGKDGKVMK 354
G A A++Q+ FP + V V+PEGSM+TMDFN +R+R + KDGKV++
Sbjct: 12 GKPAAQARQQIGAEFPEITVHVLPEGSMVTMDFNEQRVRLFV-KDGKVVR 60
BLAST of mRNA_C-australica_Contig_979.4.2 vs. uniprot
Match:
A0A2Z4V536_9ACTN (Uncharacterized protein n=3 Tax=Streptomyces TaxID=1883 RepID=A0A2Z4V536_9ACTN)
HSP 1 Score: 50.4 bits (119), Expect = 6.200e-6
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1
Query: 205 GMEAFDAKKQLQGMFPNMIVAVVPEGSMMTMDFNPKRLRCMLGKDGKVM 351
G A +A +Q+ FP + V VVPEGSM+TMDFN +R+R + KDGKV+
Sbjct: 16 GKSAEEAGRQIGAEFPEITVHVVPEGSMVTMDFNEQRVRLFV-KDGKVV 63
BLAST of mRNA_C-australica_Contig_979.4.2 vs. uniprot
Match:
UPI001FAF6776 (serine protease inhibitor n=1 Tax=Streptomyces sp. AP-93 TaxID=2929048 RepID=UPI001FAF6776)
HSP 1 Score: 49.7 bits (117), Expect = 1.070e-5
Identity = 24/50 (48.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query: 205 GMEAFDAKKQLQGMFPNMIVAVVPEGSMMTMDFNPKRLRCMLGKDGKVMK 354
G +A++Q+ FP + V VVPEGSM+TMDFN +R+R + +DGKV++
Sbjct: 10 GRPVEEARRQIGAEFPEIAVHVVPEGSMVTMDFNEQRVRLFV-RDGKVVR 58
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_979.4.2 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 1.43e-6 / Id = 53.06 Expect = 5.65e-6 / Id = 50.00 Expect = 6.20e-6 / Id = 53.06 Expect = 1.07e-5 / Id = 48.00 Sequence UPI000B150970 A0A0G3UZP2_9ACTN A0A2Z4V536_9ACTN UPI001FAF6776 back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Seed ortholog 4577.GRMZM2G058358_P01 PFAMs potato_inhibit Model size 369 Max annot lvl 35493|Streptophyta Hectar predicted targeting category signal peptide Exons 5 Evalue 0.000494 EggNOG OGs 2CIZ4@1|root,2S6W9@2759|Eukaryota,37WTM@33090|Viridiplantae,3GM7F@35493|Streptophyta,3MA8Y@4447|Liliopsida,3ISU0@38820|Poales Ec32 ortholog description putative serine protease inhibitor Ec32 ortholog Ec-26_000240.1 Description Potato inhibitor I family Cds size 369 COG category S
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682588844.4025035-CDS-C-australica_Contig_979:10033..10111 1682588844.4025035-CDS-C-australica_Contig_979:10033..10111 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_979 10034..10111 - 1682588844.414576-CDS-C-australica_Contig_979:10193..10286 1682588844.414576-CDS-C-australica_Contig_979:10193..10286 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_979 10194..10286 - 1682588844.425141-CDS-C-australica_Contig_979:10358..10469 1682588844.425141-CDS-C-australica_Contig_979:10358..10469 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_979 10359..10469 - 1682588844.4356062-CDS-C-australica_Contig_979:10540..10578 1682588844.4356062-CDS-C-australica_Contig_979:10540..10578 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_979 10541..10578 - 1682588844.4490674-CDS-C-australica_Contig_979:10680..10729 1682588844.4490674-CDS-C-australica_Contig_979:10680..10729 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_979 10681..10729 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_979.4.2
>prot_C-australica_Contig_979.4.2 ID=prot_C-australica_Contig_979.4.2|Name=mRNA_C-australica_Contig_979.4.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=123bp
MRVFPYLLVAAGVTLAAADTREKEHEIEQKLPPGVTLNIDPMVADTLPHI back to top mRNA from alignment at C-australica_Contig_979:10034..10729-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_979.4.2 ID=mRNA_C-australica_Contig_979.4.2|Name=mRNA_C-australica_Contig_979.4.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=696bp|location=Sequence derived from alignment at C-australica_Contig_979:10034..10729- (Chrysoparadoxa australica CS_1217)ATGAGGGTCTTTCCGTATCTTCTCGTCGCGGCAGGAGTAACTCTAGCAG G
TAAAAAGGTGTCTCCTGCCTTATTAGCGTACGAGCGGTCCTTGCCTTAAA
CAGCCGCTTATTGCTCTCCTCTCCCATCCCTCCTGTTGTCTTGTGCAGCA
GCTGCTGACACGCGCGAGAAAGAGCATGAGATAGAGCAA GTAAGGGAACA
TCAGCACACAGGCCCCCCTCCCCCCTCTCTACCTCACCTTTCCCCTTTCC
CCCCTCTCAGAAGCTTCCACCTGGTGTGACACTAAACATAGACCCTATGG
TGGCAGACACCTTGCCCCATATAGCTACCAAAAAGGGCGTCCCCAAGATT
GAACCTGCTGCTCTGAAGAAG GTGCTGTTGCTTAGGCCCAAGAGGACAGA
GCACATGAGGTTGTCCTGACTGTGCGCACTTTTTCCAACCTAGGTGGAAG
GCATGGAGGCATTTGATGCTAAGAAGCAGCTGCAGGGCATGTTTCCTAAC
ATGATAGTGGCTGTAGTCCCAGAGGGCAGCATGATG GTAAACCAACCTAG
CCCAAGTCCTGAAAGCTTGTGAAACTACCCAAAACTAAACTACCTTCACA
CCCCTTCATCCCATCCAGACAATGGATTTCAATCCTAAGCGGCTGCGCTG
CATGCTTGGCAAGGATGGTAAGGTCATGAAGGTCACTCAAGGGTGA back to top Coding sequence (CDS) from alignment at C-australica_Contig_979:10034..10729-
>mRNA_C-australica_Contig_979.4.2 ID=mRNA_C-australica_Contig_979.4.2|Name=mRNA_C-australica_Contig_979.4.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=369bp|location=Sequence derived from alignment at C-australica_Contig_979:10034..10729- (Chrysoparadoxa australica CS_1217) back to top