mRNA_C-australica_Contig_979.4.2 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_979.4.2
Unique NamemRNA_C-australica_Contig_979.4.2
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_979.4.2 vs. uniprot
Match: UPI000B150970 (serine protease inhibitor n=1 Tax=Streptomyces sp. CB00455 TaxID=1703927 RepID=UPI000B150970)

HSP 1 Score: 52.0 bits (123), Expect = 1.430e-6
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  205 GMEAFDAKKQLQGMFPNMIVAVVPEGSMMTMDFNPKRLRCMLGKDGKVM 351
            G  A +A++Q++  FP + V VVPEGSM+TMDFN +R+R  + KDGKV+
Sbjct:   12 GKPAEEAREQIRAEFPEVSVHVVPEGSMVTMDFNEQRVRLFV-KDGKVV 59
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BLAST of mRNA_C-australica_Contig_979.4.2 vs. uniprot
Match: A0A0G3UZP2_9ACTN (Uncharacterized protein n=2 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A0G3UZP2_9ACTN)

HSP 1 Score: 50.4 bits (119), Expect = 5.650e-6
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:  205 GMEAFDAKKQLQGMFPNMIVAVVPEGSMMTMDFNPKRLRCMLGKDGKVMK 354
            G  A  A++Q+   FP + V V+PEGSM+TMDFN +R+R  + KDGKV++
Sbjct:   12 GKPAAQARQQIGAEFPEITVHVLPEGSMVTMDFNEQRVRLFV-KDGKVVR 60
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BLAST of mRNA_C-australica_Contig_979.4.2 vs. uniprot
Match: A0A2Z4V536_9ACTN (Uncharacterized protein n=3 Tax=Streptomyces TaxID=1883 RepID=A0A2Z4V536_9ACTN)

HSP 1 Score: 50.4 bits (119), Expect = 6.200e-6
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:  205 GMEAFDAKKQLQGMFPNMIVAVVPEGSMMTMDFNPKRLRCMLGKDGKVM 351
            G  A +A +Q+   FP + V VVPEGSM+TMDFN +R+R  + KDGKV+
Sbjct:   16 GKSAEEAGRQIGAEFPEITVHVVPEGSMVTMDFNEQRVRLFV-KDGKVV 63
[Close]
BLAST of mRNA_C-australica_Contig_979.4.2 vs. uniprot
Match: UPI001FAF6776 (serine protease inhibitor n=1 Tax=Streptomyces sp. AP-93 TaxID=2929048 RepID=UPI001FAF6776)

HSP 1 Score: 49.7 bits (117), Expect = 1.070e-5
Identity = 24/50 (48.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:  205 GMEAFDAKKQLQGMFPNMIVAVVPEGSMMTMDFNPKRLRCMLGKDGKVMK 354
            G    +A++Q+   FP + V VVPEGSM+TMDFN +R+R  + +DGKV++
Sbjct:   10 GRPVEEARRQIGAEFPEIAVHVVPEGSMVTMDFNEQRVRLFV-RDGKVVR 58
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_979.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI000B1509701.430e-653.06serine protease inhibitor n=1 Tax=Streptomyces sp.... [more]
A0A0G3UZP2_9ACTN5.650e-650.00Uncharacterized protein n=2 Tax=unclassified Strep... [more]
A0A2Z4V536_9ACTN6.200e-653.06Uncharacterized protein n=3 Tax=Streptomyces TaxID... [more]
UPI001FAF67761.070e-548.00serine protease inhibitor n=1 Tax=Streptomyces sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_979contigC-australica_Contig_979:10034..10729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4577.GRMZM2G058358_P01
PFAMspotato_inhibit
Model size369
Max annot lvl35493|Streptophyta
Hectar predicted targeting categorysignal peptide
Exons5
Evalue0.000494
EggNOG OGs2CIZ4@1|root,2S6W9@2759|Eukaryota,37WTM@33090|Viridiplantae,3GM7F@35493|Streptophyta,3MA8Y@4447|Liliopsida,3ISU0@38820|Poales
Ec32 ortholog descriptionputative serine protease inhibitor
Ec32 orthologEc-26_000240.1
DescriptionPotato inhibitor I family
Cds size369
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588844.4025035-CDS-C-australica_Contig_979:10033..101111682588844.4025035-CDS-C-australica_Contig_979:10033..10111Chrysoparadoxa australica CS_1217CDSC-australica_Contig_979 10034..10111 -
1682588844.414576-CDS-C-australica_Contig_979:10193..102861682588844.414576-CDS-C-australica_Contig_979:10193..10286Chrysoparadoxa australica CS_1217CDSC-australica_Contig_979 10194..10286 -
1682588844.425141-CDS-C-australica_Contig_979:10358..104691682588844.425141-CDS-C-australica_Contig_979:10358..10469Chrysoparadoxa australica CS_1217CDSC-australica_Contig_979 10359..10469 -
1682588844.4356062-CDS-C-australica_Contig_979:10540..105781682588844.4356062-CDS-C-australica_Contig_979:10540..10578Chrysoparadoxa australica CS_1217CDSC-australica_Contig_979 10541..10578 -
1682588844.4490674-CDS-C-australica_Contig_979:10680..107291682588844.4490674-CDS-C-australica_Contig_979:10680..10729Chrysoparadoxa australica CS_1217CDSC-australica_Contig_979 10681..10729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_979.4.2prot_C-australica_Contig_979.4.2Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_979 10034..10729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_979.4.2

>prot_C-australica_Contig_979.4.2 ID=prot_C-australica_Contig_979.4.2|Name=mRNA_C-australica_Contig_979.4.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=123bp
MRVFPYLLVAAGVTLAAADTREKEHEIEQKLPPGVTLNIDPMVADTLPHI
ATKKGVPKIEPAALKKVEGMEAFDAKKQLQGMFPNMIVAVVPEGSMMTMD
FNPKRLRCMLGKDGKVMKVTQG*
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mRNA from alignment at C-australica_Contig_979:10034..10729-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_979.4.2 ID=mRNA_C-australica_Contig_979.4.2|Name=mRNA_C-australica_Contig_979.4.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=696bp|location=Sequence derived from alignment at C-australica_Contig_979:10034..10729- (Chrysoparadoxa australica CS_1217)
ATGAGGGTCTTTCCGTATCTTCTCGTCGCGGCAGGAGTAACTCTAGCAGG
TAAAAAGGTGTCTCCTGCCTTATTAGCGTACGAGCGGTCCTTGCCTTAAA
CAGCCGCTTATTGCTCTCCTCTCCCATCCCTCCTGTTGTCTTGTGCAGCA
GCTGCTGACACGCGCGAGAAAGAGCATGAGATAGAGCAAGTAAGGGAACA
TCAGCACACAGGCCCCCCTCCCCCCTCTCTACCTCACCTTTCCCCTTTCC
CCCCTCTCAGAAGCTTCCACCTGGTGTGACACTAAACATAGACCCTATGG
TGGCAGACACCTTGCCCCATATAGCTACCAAAAAGGGCGTCCCCAAGATT
GAACCTGCTGCTCTGAAGAAGGTGCTGTTGCTTAGGCCCAAGAGGACAGA
GCACATGAGGTTGTCCTGACTGTGCGCACTTTTTCCAACCTAGGTGGAAG
GCATGGAGGCATTTGATGCTAAGAAGCAGCTGCAGGGCATGTTTCCTAAC
ATGATAGTGGCTGTAGTCCCAGAGGGCAGCATGATGGTAAACCAACCTAG
CCCAAGTCCTGAAAGCTTGTGAAACTACCCAAAACTAAACTACCTTCACA
CCCCTTCATCCCATCCAGACAATGGATTTCAATCCTAAGCGGCTGCGCTG
CATGCTTGGCAAGGATGGTAAGGTCATGAAGGTCACTCAAGGGTGA
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Coding sequence (CDS) from alignment at C-australica_Contig_979:10034..10729-

>mRNA_C-australica_Contig_979.4.2 ID=mRNA_C-australica_Contig_979.4.2|Name=mRNA_C-australica_Contig_979.4.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=369bp|location=Sequence derived from alignment at C-australica_Contig_979:10034..10729- (Chrysoparadoxa australica CS_1217)
ATGAGGGTCTTTCCGTATCTTCTCGTCGCGGCAGGAGTAACTCTAGCAGC
TGCTGACACGCGCGAGAAAGAGCATGAGATAGAGCAAAAGCTTCCACCTG
GTGTGACACTAAACATAGACCCTATGGTGGCAGACACCTTGCCCCATATA
GCTACCAAAAAGGGCGTCCCCAAGATTGAACCTGCTGCTCTGAAGAAGGT
GGAAGGCATGGAGGCATTTGATGCTAAGAAGCAGCTGCAGGGCATGTTTC
CTAACATGATAGTGGCTGTAGTCCCAGAGGGCAGCATGATGACAATGGAT
TTCAATCCTAAGCGGCTGCGCTGCATGCTTGGCAAGGATGGTAAGGTCAT
GAAGGTCACTCAAGGGTGA
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