mRNA_C-australica_Contig_10254.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10254.1.1
Unique NamemRNA_C-australica_Contig_10254.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_10254.1.1 vs. uniprot
Match: A0A7Y4Y8D9_9BACT (Type IX secretion system membrane protein PorP/SprF n=1 Tax=Ferruginibacter sp. TaxID=1940288 RepID=A0A7Y4Y8D9_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 2.850e-5
Identity = 46/147 (31.29%), Postives = 72/147 (48.98%), Query Frame = 1 
Query:    1 FGAVYRLKDLSVGASINQFPIRAVLN----NVSSIER--LYRIESQVSYAFNFSENW--------TFRPMVRYLAISNFQSIDGLIKAEFKDQFWASAYYGSSNLSGLSAGAQLGKNWSVGYGFNFYLSRL-NASVYRNSHEIMLRY 396
            FG  Y  K+L++GAS++Q  +++ LN    N+++ E   LYR      Y F+   NW        T   +V YL  +      G  + E    FW    Y S     LSAG  + K +++GYG++ Y+S + N     + HE++LRY
Sbjct:  155 FGIAYNRKNLTIGASVSQL-VQSKLNFYSGNLTTNEEAMLYR-----HYYFHGQYNWKVDEVTVITPNALVIYLPNAPVSYQVGA-RMEHNKTFWWGLGYRSHQSFMLSAGLHINKKFTLGYGYDDYISPISNFDNGASGHEVLLRY 294
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BLAST of mRNA_C-australica_Contig_10254.1.1 vs. uniprot
Match: A0A7D3XF64_9BACT (Type IX secretion system membrane protein PorP/SprF n=1 Tax=Tenuifilum thalassicum TaxID=2590900 RepID=A0A7D3XF64_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 5.470e-5
Identity = 33/109 (30.28%), Postives = 54/109 (49.54%), Query Frame = 1 
Query:   73 LNNVSSIERLYRIESQVSYAFNFSENWTFRPMVRYLAISNFQ-SIDGLIKAEFKDQFWASAYYGSSNLSGLSAGAQLGKNWSVGYGFNFYLSRLNASVYRNSHEIMLRY 396
            + N   ++R Y I +   Y +  +  W F+P     A+     S D   +  ++D  W  A Y   + +G+    ++    +VGYG++F LSRLN S  R +HEIML +
Sbjct:  191 ITNSDQLKRHYYIIA--GYVWQLNSEWLFKPSFIAKAVGGAPLSTDITAQFLYRDFIWVGAMYRLGDAAGIFFNFKISNQLTVGYGYDFSLSRLN-SYNRGTHEIMLSF 296
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BLAST of mRNA_C-australica_Contig_10254.1.1 vs. uniprot
Match: A0A1F3VVC5_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium RIFCSPHIGHO2_02_FULL_44_7 TaxID=1797361 RepID=A0A1F3VVC5_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 7.540e-5
Identity = 27/77 (35.06%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:  166 MVRYLAISNFQSIDGLIKAEFKDQFWASAYYGSSNLSGLSAGAQLGKNWSVGYGFNFYLSRLNASVYRNSHEIMLRY 396
            +VRY      Q I G++K  +  ++W    Y SS+  G+SAG ++   ++VGYG+++ +SRL ++    SHE+ML +
Sbjct:  207 LVRYTKPIPLQVI-GMLKGTYDGKYWLGFLYRSSDAIGISAGVKIKDRFTVGYGYDYTISRL-SNYQSGSHEVMLSF 281
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10254.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7Y4Y8D9_9BACT2.850e-531.29Type IX secretion system membrane protein PorP/Spr... [more]
A0A7D3XF64_9BACT5.470e-530.28Type IX secretion system membrane protein PorP/Spr... [more]
A0A1F3VVC5_9BACT7.540e-535.06Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10254contigC-australica_Contig_10254:316..723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1506583.JQJY01000001_gene813
PFAMsPorP_SprF
Model size408
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000198
EggNOG OGsCOG3064@1|root,COG3064@2|Bacteria,4NEVD@976|Bacteroidetes,1HWKC@117743|Flavobacteriia,2NT6M@237|Flavobacterium
Descriptionmembrane
Cds size408
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586762.567941-CDS-C-australica_Contig_10254:315..7231682586762.567941-CDS-C-australica_Contig_10254:315..723Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10254 316..723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10254.1.1prot_C-australica_Contig_10254.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10254 316..723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10254.1.1

>prot_C-australica_Contig_10254.1.1 ID=prot_C-australica_Contig_10254.1.1|Name=mRNA_C-australica_Contig_10254.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=136bp
FGAVYRLKDLSVGASINQFPIRAVLNNVSSIERLYRIESQVSYAFNFSEN
WTFRPMVRYLAISNFQSIDGLIKAEFKDQFWASAYYGSSNLSGLSAGAQL
GKNWSVGYGFNFYLSRLNASVYRNSHEIMLRYRLN*
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mRNA from alignment at C-australica_Contig_10254:316..723-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10254.1.1 ID=mRNA_C-australica_Contig_10254.1.1|Name=mRNA_C-australica_Contig_10254.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=408bp|location=Sequence derived from alignment at C-australica_Contig_10254:316..723- (Chrysoparadoxa australica CS_1217)
TTTGGAGCTGTCTATCGTCTGAAGGACTTATCTGTTGGCGCTTCCATCAA
TCAGTTTCCAATCCGGGCTGTACTCAACAATGTTTCATCGATTGAACGAC
TTTACAGAATTGAATCACAAGTAAGTTATGCTTTCAATTTTTCTGAGAAT
TGGACATTTCGACCAATGGTACGCTACCTCGCCATCAGCAATTTTCAATC
CATCGATGGGTTGATCAAAGCAGAATTTAAGGACCAATTTTGGGCGTCGG
CCTACTACGGTTCGAGCAACCTTTCTGGATTGTCAGCTGGCGCTCAACTT
GGCAAAAATTGGTCTGTTGGATACGGATTCAACTTTTACCTGTCGCGCTT
GAATGCTTCTGTATACCGAAACAGTCATGAAATCATGTTGCGATACCGAC
TGAATTAA
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Coding sequence (CDS) from alignment at C-australica_Contig_10254:316..723-

>mRNA_C-australica_Contig_10254.1.1 ID=mRNA_C-australica_Contig_10254.1.1|Name=mRNA_C-australica_Contig_10254.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=408bp|location=Sequence derived from alignment at C-australica_Contig_10254:316..723- (Chrysoparadoxa australica CS_1217)
TTTGGAGCTGTCTATCGTCTGAAGGACTTATCTGTTGGCGCTTCCATCAA
TCAGTTTCCAATCCGGGCTGTACTCAACAATGTTTCATCGATTGAACGAC
TTTACAGAATTGAATCACAAGTAAGTTATGCTTTCAATTTTTCTGAGAAT
TGGACATTTCGACCAATGGTACGCTACCTCGCCATCAGCAATTTTCAATC
CATCGATGGGTTGATCAAAGCAGAATTTAAGGACCAATTTTGGGCGTCGG
CCTACTACGGTTCGAGCAACCTTTCTGGATTGTCAGCTGGCGCTCAACTT
GGCAAAAATTGGTCTGTTGGATACGGATTCAACTTTTACCTGTCGCGCTT
GAATGCTTCTGTATACCGAAACAGTCATGAAATCATGTTGCGATACCGAC
TGAATTAA
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