mRNA_C-australica_Contig_10254.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_10254.1.1 vs. uniprot
Match: A0A7Y4Y8D9_9BACT (Type IX secretion system membrane protein PorP/SprF n=1 Tax=Ferruginibacter sp. TaxID=1940288 RepID=A0A7Y4Y8D9_9BACT) HSP 1 Score: 52.4 bits (124), Expect = 2.850e-5 Identity = 46/147 (31.29%), Postives = 72/147 (48.98%), Query Frame = 1 Query: 1 FGAVYRLKDLSVGASINQFPIRAVLN----NVSSIER--LYRIESQVSYAFNFSENW--------TFRPMVRYLAISNFQSIDGLIKAEFKDQFWASAYYGSSNLSGLSAGAQLGKNWSVGYGFNFYLSRL-NASVYRNSHEIMLRY 396
FG Y K+L++GAS++Q +++ LN N+++ E LYR Y F+ NW T +V YL + G + E FW Y S LSAG + K +++GYG++ Y+S + N + HE++LRY
Sbjct: 155 FGIAYNRKNLTIGASVSQL-VQSKLNFYSGNLTTNEEAMLYR-----HYYFHGQYNWKVDEVTVITPNALVIYLPNAPVSYQVGA-RMEHNKTFWWGLGYRSHQSFMLSAGLHINKKFTLGYGYDDYISPISNFDNGASGHEVLLRY 294
BLAST of mRNA_C-australica_Contig_10254.1.1 vs. uniprot
Match: A0A7D3XF64_9BACT (Type IX secretion system membrane protein PorP/SprF n=1 Tax=Tenuifilum thalassicum TaxID=2590900 RepID=A0A7D3XF64_9BACT) HSP 1 Score: 51.6 bits (122), Expect = 5.470e-5 Identity = 33/109 (30.28%), Postives = 54/109 (49.54%), Query Frame = 1 Query: 73 LNNVSSIERLYRIESQVSYAFNFSENWTFRPMVRYLAISNFQ-SIDGLIKAEFKDQFWASAYYGSSNLSGLSAGAQLGKNWSVGYGFNFYLSRLNASVYRNSHEIMLRY 396
+ N ++R Y I + Y + + W F+P A+ S D + ++D W A Y + +G+ ++ +VGYG++F LSRLN S R +HEIML +
Sbjct: 191 ITNSDQLKRHYYIIA--GYVWQLNSEWLFKPSFIAKAVGGAPLSTDITAQFLYRDFIWVGAMYRLGDAAGIFFNFKISNQLTVGYGYDFSLSRLN-SYNRGTHEIMLSF 296
BLAST of mRNA_C-australica_Contig_10254.1.1 vs. uniprot
Match: A0A1F3VVC5_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium RIFCSPHIGHO2_02_FULL_44_7 TaxID=1797361 RepID=A0A1F3VVC5_9BACT) HSP 1 Score: 51.2 bits (121), Expect = 7.540e-5 Identity = 27/77 (35.06%), Postives = 47/77 (61.04%), Query Frame = 1 Query: 166 MVRYLAISNFQSIDGLIKAEFKDQFWASAYYGSSNLSGLSAGAQLGKNWSVGYGFNFYLSRLNASVYRNSHEIMLRY 396
+VRY Q I G++K + ++W Y SS+ G+SAG ++ ++VGYG+++ +SRL ++ SHE+ML +
Sbjct: 207 LVRYTKPIPLQVI-GMLKGTYDGKYWLGFLYRSSDAIGISAGVKIKDRFTVGYGYDYTISRL-SNYQSGSHEVMLSF 281 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10254.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10254.1.1 >prot_C-australica_Contig_10254.1.1 ID=prot_C-australica_Contig_10254.1.1|Name=mRNA_C-australica_Contig_10254.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=136bp FGAVYRLKDLSVGASINQFPIRAVLNNVSSIERLYRIESQVSYAFNFSENback to top mRNA from alignment at C-australica_Contig_10254:316..723- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10254.1.1 ID=mRNA_C-australica_Contig_10254.1.1|Name=mRNA_C-australica_Contig_10254.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=408bp|location=Sequence derived from alignment at C-australica_Contig_10254:316..723- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10254:316..723- >mRNA_C-australica_Contig_10254.1.1 ID=mRNA_C-australica_Contig_10254.1.1|Name=mRNA_C-australica_Contig_10254.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=408bp|location=Sequence derived from alignment at C-australica_Contig_10254:316..723- (Chrysoparadoxa australica CS_1217)back to top |