Homology
BLAST of mRNA_C-australica_Contig_1025.5.1 vs. uniprot
Match: A0A0M0JCQ0_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JCQ0_9EUKA) HSP 1 Score: 63.2 bits (152), Expect = 9.740e-9 Identity = 30/82 (36.59%), Postives = 50/82 (60.98%), Query Frame = 1 Query: 184 RTLQQKISRHLGHLRQYYAVGTCIEQLEKWEEAHNERYDIVLKLRDDSVLMEPLLVEHAH-TEGAHFLKCMGWGGLDDKHFI 426
R ++++R HL Q+ + TC + +E+ E A + YD++LKLRD++V + P ++ H T GA KC+ WGG +DK +
Sbjct: 301 RPAAERMTRLQHHLSQFAHMRTCAQMIEQREIATHSHYDVILKLRDNTVAVAPFVISPHHATGGARTKKCVEWGGYNDKAMV 382
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 0 |
| Model size | 459 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Cds size | 459 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682586762.373196-CDS-C-australica_Contig_1025:12361..12395 | 1682586762.373196-CDS-C-australica_Contig_1025:12361..12395 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1025 12362..12395 + |
| 1682586762.3827808-CDS-C-australica_Contig_1025:12528..12638 | 1682586762.3827808-CDS-C-australica_Contig_1025:12528..12638 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1025 12529..12638 + |
| 1682586762.3908126-CDS-C-australica_Contig_1025:13010..13127 | 1682586762.3908126-CDS-C-australica_Contig_1025:13010..13127 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1025 13011..13127 + |
| 1682586762.3991482-CDS-C-australica_Contig_1025:13354..13462 | 1682586762.3991482-CDS-C-australica_Contig_1025:13354..13462 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1025 13355..13462 + |
| 1682586762.407818-CDS-C-australica_Contig_1025:13717..13775 | 1682586762.407818-CDS-C-australica_Contig_1025:13717..13775 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1025 13718..13775 + |
| 1682586762.422811-CDS-C-australica_Contig_1025:13978..14010 | 1682586762.422811-CDS-C-australica_Contig_1025:13978..14010 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1025 13979..14010 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1025.5.1 >prot_C-australica_Contig_1025.5.1 ID=prot_C-australica_Contig_1025.5.1|Name=mRNA_C-australica_Contig_1025.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=153bp
LYNTTKTTNEHDLEPGPWVHRSIQSLEDFLKEFAHDASVRLDDVPYFQVR
RSFVGALDKTYRTLQQKISRHLGHLRQYYAVGTCIEQLEKWEEAHNERYD
IVLKLRDDSVLMEPLLVEHAHTEGAHFLKCMGWGGLDDKHFIGGRDSAGK
LMS back to topmRNA from alignment at C-australica_Contig_1025:12362..14010+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-australica_Contig_1025.5.1 ID=mRNA_C-australica_Contig_1025.5.1|Name=mRNA_C-australica_Contig_1025.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1649bp|location=Sequence derived from alignment at C-australica_Contig_1025:12362..14010+ (Chrysoparadoxa australica CS_1217)
CTCTACAACACCACCAAGACCACTAATGAGCATGGTACGGCAGTGAACTT
AGTGCTGCTCAACTCATTCACTCACCCCCGTAGCTCCTATGCTCCCGCAG
CCCCGTAAACACAGAGCTCTCACCGGGCTTCTTCCCTTCTTCTCTCCCTT
GCGCATCTCCATCCCAGACCTAGAGCCAGGCCCCTGGGTACATAGATCCA
TCCAGAGCCTTGAAGATTTCCTGAAGGAATTTGCCCACGATGCATCTGTG
CGGCTGGATGACGTGCCATACTTCCAGGTAGAGCGGCCTCTTAGCCTCTA
GCTCCAGCTCACTCAATGCATTCACTGTTTGTGTGACTGACACTACCTTA
GCTAGCAAGTTCAATCACCTTGCACCAGCGCTCAGCGTCTCAAGCACCAA
AGCAGCTCAGACTAGTTCAGTCCTAGCTCACACACTCACTCCTTCACCCA
GCAGGCCAGCCAATCCTCCTCATTTGAAACTCACTTTTACTCCTATACCT
TGCTAATAGAGGAGATGCGTAACTATCCTAAAATAGAGGAATTGCAAAGT
CTTCAGTACAAGAACTTCAATCCTCCTCGCTTTAAACCTTAAGCCTTCAA
CCTGCATCATCATCTGTCCTTTCCCCCACCATAATGTGCATGCATGCAGG
TCCGAAGGAGCTTTGTTGGCGCACTGGACAAAACGTACCGCACTCTGCAG
CAAAAGATCAGCCGGCATCTGGGCCACCTCCGACAGTACTACGCCGTCGG
CACATGCATCGAGCAGGTACTCCATGCTACAGACGGACCAGACCAGCTCT
TAGCGTTAAGTAGGGTATGGCACAGGCCACACACGAGTGCCTTGCTGACA
ACCTGGCATGGAATTTGCTGCTCTTTTCCCGGTGTGCTGCGTGGGTATGG
TGAATGGCGGATGGGTGCGCTCTCTCCCCCGTCTATCTCCACGCTTGCTG
GCTTGCTCTCCCCCAAACTCAGCGACCCCCTTACTTGCCACAGTTGGAGA
AGTGGGAAGAGGCTCACAATGAGAGGTATGACATCGTGCTGAAGCTCAGG
GATGACTCTGTGCTAATGGAGCCTCTCCTGGTTGAGCATGCGCACACGGA
GGTAGCTAGCCCTTCCGCTCTTGCCCCCTTACGCATTTCCTTCTCCTACT
CTAATCTGTAAACAACTGGCACGTTCATGCGCTCAATACATTCACCTGGT
CACTACAAGTGTGGCACTTGTTTGAGCCTGGCAGACCTGGGTGCTGTGAT
TTGTGCGCAGTGCAGTGGTTACGAAATCTCTGAATCCATTCCAAGCTGCA
GCCCACACGCAAAGCCTGTTCCATCTTACAACCACTTACTCACTGTACTG
ACTCAGGGGGCACATTTTCTCAAGTGCATGGGATGGGGAGGGCTGGACGA
CAAGCACTTTATAGGTATAAGCAGTGCACGGCCAACACCAGCTTTGGCGG
TTAAGCTGCTAGCATTGATGATACGGGCACCGTGCTTCTGCGGATTCGTT
CGCATCATGAGGACATCTGCTTTGGCATTTTAATCCCCTTTTTACTGCCT
GCCCAAGAGGAAATTCATCTCACGATGGCTCCAGAACTCATGCTTCCTCT
TGGTGACTGCACCTCAGGAGGTCGAGACAGTGCAGGGAAGCTCATGAGC back to topCoding sequence (CDS) from alignment at C-australica_Contig_1025:12362..14010+ >mRNA_C-australica_Contig_1025.5.1 ID=mRNA_C-australica_Contig_1025.5.1|Name=mRNA_C-australica_Contig_1025.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=459bp|location=Sequence derived from alignment at C-australica_Contig_1025:12362..14010+ (Chrysoparadoxa australica CS_1217)
CTCTACAACACCACCAAGACCACTAATGAGCATGACCTAGAGCCAGGCCC
CTGGGTACATAGATCCATCCAGAGCCTTGAAGATTTCCTGAAGGAATTTG
CCCACGATGCATCTGTGCGGCTGGATGACGTGCCATACTTCCAGGTCCGA
AGGAGCTTTGTTGGCGCACTGGACAAAACGTACCGCACTCTGCAGCAAAA
GATCAGCCGGCATCTGGGCCACCTCCGACAGTACTACGCCGTCGGCACAT
GCATCGAGCAGTTGGAGAAGTGGGAAGAGGCTCACAATGAGAGGTATGAC
ATCGTGCTGAAGCTCAGGGATGACTCTGTGCTAATGGAGCCTCTCCTGGT
TGAGCATGCGCACACGGAGGGGGCACATTTTCTCAAGTGCATGGGATGGG
GAGGGCTGGACGACAAGCACTTTATAGGAGGTCGAGACAGTGCAGGGAAG
CTCATGAGC back to top
|