mRNA_C-australica_Contig_1025.5.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1025.5.1
Unique NamemRNA_C-australica_Contig_1025.5.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_1025.5.1 vs. uniprot
Match: A0A0M0JCQ0_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JCQ0_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 9.740e-9
Identity = 30/82 (36.59%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:  184 RTLQQKISRHLGHLRQYYAVGTCIEQLEKWEEAHNERYDIVLKLRDDSVLMEPLLVEHAH-TEGAHFLKCMGWGGLDDKHFI 426
            R   ++++R   HL Q+  + TC + +E+ E A +  YD++LKLRD++V + P ++   H T GA   KC+ WGG +DK  +
Sbjct:  301 RPAAERMTRLQHHLSQFAHMRTCAQMIEQREIATHSHYDVILKLRDNTVAVAPFVISPHHATGGARTKKCVEWGGYNDKAMV 382
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1025.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0M0JCQ0_9EUKA9.740e-936.59Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1025contigC-australica_Contig_1025:12362..14010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size459
Hectar predicted targeting categoryother localisation
Exons6
Cds size459
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1025.5.1prot_C-australica_Contig_1025.5.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1025 12362..14010 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586762.373196-CDS-C-australica_Contig_1025:12361..123951682586762.373196-CDS-C-australica_Contig_1025:12361..12395Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1025 12362..12395 +
1682586762.3827808-CDS-C-australica_Contig_1025:12528..126381682586762.3827808-CDS-C-australica_Contig_1025:12528..12638Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1025 12529..12638 +
1682586762.3908126-CDS-C-australica_Contig_1025:13010..131271682586762.3908126-CDS-C-australica_Contig_1025:13010..13127Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1025 13011..13127 +
1682586762.3991482-CDS-C-australica_Contig_1025:13354..134621682586762.3991482-CDS-C-australica_Contig_1025:13354..13462Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1025 13355..13462 +
1682586762.407818-CDS-C-australica_Contig_1025:13717..137751682586762.407818-CDS-C-australica_Contig_1025:13717..13775Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1025 13718..13775 +
1682586762.422811-CDS-C-australica_Contig_1025:13978..140101682586762.422811-CDS-C-australica_Contig_1025:13978..14010Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1025 13979..14010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1025.5.1

>prot_C-australica_Contig_1025.5.1 ID=prot_C-australica_Contig_1025.5.1|Name=mRNA_C-australica_Contig_1025.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=153bp
LYNTTKTTNEHDLEPGPWVHRSIQSLEDFLKEFAHDASVRLDDVPYFQVR
RSFVGALDKTYRTLQQKISRHLGHLRQYYAVGTCIEQLEKWEEAHNERYD
IVLKLRDDSVLMEPLLVEHAHTEGAHFLKCMGWGGLDDKHFIGGRDSAGK
LMS
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mRNA from alignment at C-australica_Contig_1025:12362..14010+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1025.5.1 ID=mRNA_C-australica_Contig_1025.5.1|Name=mRNA_C-australica_Contig_1025.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1649bp|location=Sequence derived from alignment at C-australica_Contig_1025:12362..14010+ (Chrysoparadoxa australica CS_1217)
CTCTACAACACCACCAAGACCACTAATGAGCATGGTACGGCAGTGAACTT
AGTGCTGCTCAACTCATTCACTCACCCCCGTAGCTCCTATGCTCCCGCAG
CCCCGTAAACACAGAGCTCTCACCGGGCTTCTTCCCTTCTTCTCTCCCTT
GCGCATCTCCATCCCAGACCTAGAGCCAGGCCCCTGGGTACATAGATCCA
TCCAGAGCCTTGAAGATTTCCTGAAGGAATTTGCCCACGATGCATCTGTG
CGGCTGGATGACGTGCCATACTTCCAGGTAGAGCGGCCTCTTAGCCTCTA
GCTCCAGCTCACTCAATGCATTCACTGTTTGTGTGACTGACACTACCTTA
GCTAGCAAGTTCAATCACCTTGCACCAGCGCTCAGCGTCTCAAGCACCAA
AGCAGCTCAGACTAGTTCAGTCCTAGCTCACACACTCACTCCTTCACCCA
GCAGGCCAGCCAATCCTCCTCATTTGAAACTCACTTTTACTCCTATACCT
TGCTAATAGAGGAGATGCGTAACTATCCTAAAATAGAGGAATTGCAAAGT
CTTCAGTACAAGAACTTCAATCCTCCTCGCTTTAAACCTTAAGCCTTCAA
CCTGCATCATCATCTGTCCTTTCCCCCACCATAATGTGCATGCATGCAGG
TCCGAAGGAGCTTTGTTGGCGCACTGGACAAAACGTACCGCACTCTGCAG
CAAAAGATCAGCCGGCATCTGGGCCACCTCCGACAGTACTACGCCGTCGG
CACATGCATCGAGCAGGTACTCCATGCTACAGACGGACCAGACCAGCTCT
TAGCGTTAAGTAGGGTATGGCACAGGCCACACACGAGTGCCTTGCTGACA
ACCTGGCATGGAATTTGCTGCTCTTTTCCCGGTGTGCTGCGTGGGTATGG
TGAATGGCGGATGGGTGCGCTCTCTCCCCCGTCTATCTCCACGCTTGCTG
GCTTGCTCTCCCCCAAACTCAGCGACCCCCTTACTTGCCACAGTTGGAGA
AGTGGGAAGAGGCTCACAATGAGAGGTATGACATCGTGCTGAAGCTCAGG
GATGACTCTGTGCTAATGGAGCCTCTCCTGGTTGAGCATGCGCACACGGA
GGTAGCTAGCCCTTCCGCTCTTGCCCCCTTACGCATTTCCTTCTCCTACT
CTAATCTGTAAACAACTGGCACGTTCATGCGCTCAATACATTCACCTGGT
CACTACAAGTGTGGCACTTGTTTGAGCCTGGCAGACCTGGGTGCTGTGAT
TTGTGCGCAGTGCAGTGGTTACGAAATCTCTGAATCCATTCCAAGCTGCA
GCCCACACGCAAAGCCTGTTCCATCTTACAACCACTTACTCACTGTACTG
ACTCAGGGGGCACATTTTCTCAAGTGCATGGGATGGGGAGGGCTGGACGA
CAAGCACTTTATAGGTATAAGCAGTGCACGGCCAACACCAGCTTTGGCGG
TTAAGCTGCTAGCATTGATGATACGGGCACCGTGCTTCTGCGGATTCGTT
CGCATCATGAGGACATCTGCTTTGGCATTTTAATCCCCTTTTTACTGCCT
GCCCAAGAGGAAATTCATCTCACGATGGCTCCAGAACTCATGCTTCCTCT
TGGTGACTGCACCTCAGGAGGTCGAGACAGTGCAGGGAAGCTCATGAGC
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Coding sequence (CDS) from alignment at C-australica_Contig_1025:12362..14010+

>mRNA_C-australica_Contig_1025.5.1 ID=mRNA_C-australica_Contig_1025.5.1|Name=mRNA_C-australica_Contig_1025.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=459bp|location=Sequence derived from alignment at C-australica_Contig_1025:12362..14010+ (Chrysoparadoxa australica CS_1217)
CTCTACAACACCACCAAGACCACTAATGAGCATGACCTAGAGCCAGGCCC
CTGGGTACATAGATCCATCCAGAGCCTTGAAGATTTCCTGAAGGAATTTG
CCCACGATGCATCTGTGCGGCTGGATGACGTGCCATACTTCCAGGTCCGA
AGGAGCTTTGTTGGCGCACTGGACAAAACGTACCGCACTCTGCAGCAAAA
GATCAGCCGGCATCTGGGCCACCTCCGACAGTACTACGCCGTCGGCACAT
GCATCGAGCAGTTGGAGAAGTGGGAAGAGGCTCACAATGAGAGGTATGAC
ATCGTGCTGAAGCTCAGGGATGACTCTGTGCTAATGGAGCCTCTCCTGGT
TGAGCATGCGCACACGGAGGGGGCACATTTTCTCAAGTGCATGGGATGGG
GAGGGCTGGACGACAAGCACTTTATAGGAGGTCGAGACAGTGCAGGGAAG
CTCATGAGC
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