mRNA_C-australica_Contig_1022.6.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1022.6.1
Unique NamemRNA_C-australica_Contig_1022.6.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
[Close]
BLAST of mRNA_C-australica_Contig_1022.6.1 vs. uniprot
Match: A0A835Z2T5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2T5_9STRA)

HSP 1 Score: 120 bits (300), Expect = 5.460e-26
Identity = 83/228 (36.40%), Postives = 115/228 (50.44%), Query Frame = 3 
Query:  951 CMQDALLPGVKPGSCLQVLCFPDRIAFDEPFHATVTWCLDRARPAALSFDTLDNIEKFFISYGEGGSTKTFYDDEEEAYQCGINTFEITLPADLTIDNPEFSGDVMYKYFITPIFYGDDEKDTPQLLQDPFPNMLAEAGWNLLPDQYGALEGDCPVVDFELWNLTEPEPYDAIDIEI-PECHENGKDLDITFDVELNTIEESEITCNLMGGQGVDVYLSEEEIFVAQA 1631
            C Q    PGVKPGSC QV+C P  IA   PFH  V WCL R R + L  DTLD   K +  YG  G T       E  +QCG +TFE T+ A       E++  V+++YF+TP+ +GD   D  +  ++P+PN +A  G +  P  Y  L  DC +    L N       D ID    P C + G+   +     L +   +++  NL  G G D YL  ++IFVA++
Sbjct:   48 CKQPTPPPGVKPGSCFQVVCLPTSIAIGAPFHTRVRWCLQRPRRSHLVVDTLDVNTKEW--YGGDGYTP------EGEWQCGEHTFEQTMNAVPDPATGEYN--VLWRYFVTPV-WGDGRYDIRE--EEPYPNAIAATGIDRQP-LYDGLVDDCGLRPDRLVNFPPTGVQDGIDFPYTPYCIQPGEPFFVAVFTHLLSAPAADLHVNLHIGTGPDKYLGPDDIFVAES 261
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1022.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z2T5_9STRA5.460e-2636.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1022contigC-australica_Contig_1022:6234..10343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2070
Hectar predicted targeting categorysignal peptide
Exons16
Cds size1587
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586759.5562358-UTR-C-australica_Contig_1022:6233..65461682586759.5562358-UTR-C-australica_Contig_1022:6233..6546Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1022 6234..6546 -
1682586759.72527-UTR-C-australica_Contig_1022:10072..101801682586759.72527-UTR-C-australica_Contig_1022:10072..10180Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1022 10073..10180 -
1682586759.7340631-UTR-C-australica_Contig_1022:10281..103431682586759.7340631-UTR-C-australica_Contig_1022:10281..10343Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1022 10282..10343 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586759.5680542-CDS-C-australica_Contig_1022:6546..66751682586759.5680542-CDS-C-australica_Contig_1022:6546..6675Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1022 6547..6675 -
1682586759.5780494-CDS-C-australica_Contig_1022:6904..70081682586759.5780494-CDS-C-australica_Contig_1022:6904..7008Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1022 6905..7008 -
1682586759.586109-CDS-C-australica_Contig_1022:7075..71521682586759.586109-CDS-C-australica_Contig_1022:7075..7152Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1022 7076..7152 -
1682586759.6006057-CDS-C-australica_Contig_1022:7245..73361682586759.6006057-CDS-C-australica_Contig_1022:7245..7336Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1022 7246..7336 -
1682586759.610703-CDS-C-australica_Contig_1022:7467..75101682586759.610703-CDS-C-australica_Contig_1022:7467..7510Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1022 7468..7510 -
1682586759.618431-CDS-C-australica_Contig_1022:7633..77731682586759.618431-CDS-C-australica_Contig_1022:7633..7773Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1022 7634..7773 -
1682586759.6265829-CDS-C-australica_Contig_1022:7882..79621682586759.6265829-CDS-C-australica_Contig_1022:7882..7962Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1022 7883..7962 -
1682586759.63502-CDS-C-australica_Contig_1022:8097..81891682586759.63502-CDS-C-australica_Contig_1022:8097..8189Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1022 8098..8189 -
1682586759.6441257-CDS-C-australica_Contig_1022:8271..83121682586759.6441257-CDS-C-australica_Contig_1022:8271..8312Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1022 8272..8312 -
1682586759.6540174-CDS-C-australica_Contig_1022:8417..85671682586759.6540174-CDS-C-australica_Contig_1022:8417..8567Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1022 8418..8567 -
1682586759.6636095-CDS-C-australica_Contig_1022:8726..88101682586759.6636095-CDS-C-australica_Contig_1022:8726..8810Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1022 8727..8810 -
1682586759.6734784-CDS-C-australica_Contig_1022:8911..90771682586759.6734784-CDS-C-australica_Contig_1022:8911..9077Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1022 8912..9077 -
1682586759.6832805-CDS-C-australica_Contig_1022:9234..94111682586759.6832805-CDS-C-australica_Contig_1022:9234..9411Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1022 9235..9411 -
1682586759.6926668-CDS-C-australica_Contig_1022:9495..96091682586759.6926668-CDS-C-australica_Contig_1022:9495..9609Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1022 9496..9609 -
1682586759.7118785-CDS-C-australica_Contig_1022:9973..100721682586759.7118785-CDS-C-australica_Contig_1022:9973..10072Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1022 9974..10072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1022.6.1prot_C-australica_Contig_1022.6.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1022 6547..10072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1022.6.1

>prot_C-australica_Contig_1022.6.1 ID=prot_C-australica_Contig_1022.6.1|Name=mRNA_C-australica_Contig_1022.6.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=529bp
MRAPPQCVLLGLFLAQGLALTPEEVDEVEETTEPVAVPPPPINIYFGEPY
TGEPFPIPGVVQAEMFNVGPEAYFNFDLGLEGFVSEFRAGSPVEITAVGL
SLEEQKEAAERAEEEEIVVAAAPDLPENYKIDYIVPGEFLSYEVLITEPG
DYSAIISTSAVAPQKPFDISLKLNDDRCGVEENTLVRFQRRIREIHTADP
NVFIDHTETFTLPEDGVRGEATITVCFNDVENITFDKFELVLESEPGATF
APTLAPPPYTCMQDALLPGVKPGSCLQVLCFPDRIAFDEPFHATVTWCLD
RARPAALSFDTLDNIEKFFISYGEGGSTKTFYDDEEEAYQCGINTFEITL
PADLTIDNPEFSGDVMYKYFITPIFYGDDEKDTPQLLQDPFPNMLAEAGW
NLLPDQYGALEGDCPVVDFELWNLTEPEPYDAIDIEIPECHENGKDLDIT
FDVELNTIEESEITCNLMGGQGVDVYLSEEEIFVAQAYMNVEGSGRYTIT
IPGELTEGAEIVENPYVSCWLGKPGMSS*
back to top

mRNA from alignment at C-australica_Contig_1022:6234..10343-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1022.6.1 ID=mRNA_C-australica_Contig_1022.6.1|Name=mRNA_C-australica_Contig_1022.6.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=4110bp|location=Sequence derived from alignment at C-australica_Contig_1022:6234..10343- (Chrysoparadoxa australica CS_1217)
TCAAGGAGCAGTGACCCGTGACCATCACTCTTCACACCACAACATTTTAC
ACTGCGTGGAAGGTAAAGGGGTTGCTTTTAACTTTCTTGCGTTTTTGTCT
CCTACGCTAAAAGGAACATTCCTGGTCTCCGTTTGACCCCCCAAAAATTC
CTCCTCGGGACAGGTCAGCAAAATGTTCTTCATATCAACCATAGGCAAAC
AGGGTGGTTGGAATCATTATTAGACCGTCTCCACACCCCGTCTTCACCTA
CAGCCGTCTACAGTTCAGAGGATGCGAGCCCCTCCTCAATGTGTGTTGCT
AGGCCTATTCCTCGCGCAGGGCTTGGCCTTGACGCCGGAAGAGGTCGATG
AGGTGGAGGAGACAACCGAGGTATTACAGCTGGAGCTGAGCTGCATTATC
CCTCTTCCTCTGTGTGTGTGTCTCTGTCTCTCCCTCCCGTGACCAGTACC
TTGCAAAGCGCGAGAACCCCGAACCGATCTTACCCATGGACGTCTCACGC
GCTCTGTGGGCTAAATTCTTCTCCCTGAAGCCCTTGCACCTTGCACCCTT
TTCTCATCCTTCACTCATCCCCTCTCCGTGGGACCCATCGACCTCCTCAC
CTCGACACCAGCTAAGCAGTTATTAAGCCACTTTAACCCGAACCGCCGAG
ACCTCTGAGGACGGTGCCTCCTCCCTGCCAACCCCACAGCTCTAGCACTA
ACCCTCTCTCCCCCCTCCCTCCCTTGTTTGATAGCCCGTTGCAGTGCCTC
CACCCCCTATCAACATCTACTTCGGAGAGCCTTACACTGGAGAGCCATTC
CCCATACCTGGCGTTGTGCAGGCCGAGATGTTTAACGTTGGACCTGAGGT
GATGAGCATCTTTCGTGGACTCCCCAGCCGTTCCTGGTCCACTTGCTAAC
TGCACCTCGCTATTCCATCTCTGACCCCACAGGCATATTTCAATTTTGAC
TTGGGACTTGAAGGCTTTGTGAGCGAATTCCGTGCAGGCTCACCAGTAGA
AATCACAGCCGTCGGGTTGTCTCTTGAAGAGCAGAAGGAAGCAGCAGAGA
GGGCTGAAGAGGAGGAGATTGTGGTTGCAGCAGCCCCTGACCTTCCCGAG
AACTACAAGGTAATAACAGCTGCCTTCAGCTTTGGTCAATGCATTCCAGC
TTAGCAGCTTCTTCTCTGTGTGTCTCTCTCTGCGCCTGCCTGTGTCAGCA
AGAGAGCAAGACGCGAAAAGCTTGCTTTATCTAAACGGTCTCTCGTCTCC
TCCATCACTTCATTAGATTGACTACATCGTGCCGGGAGAGTTCCTGAGCT
ACGAGGTCCTAATCACTGAGCCGGGTGACTACTCAGCCATCATCAGCACT
TCAGCTGTTGCGCCGCAGAAGCCCTTTGACATCAGCCTCAAGCTGAATGA
TGATAGGTGCGGGGTTGAGGAGAACACCCTTGGTAAGGAAGAGACCTACT
GCACTCACACCAGTCACTTGCACCACCAGTCAATCACTAGTAGAAGCACC
CAGTTCCCTAACCAGCTTTCACCTCCATTTCAGTTCGCTTCCAAAGGCGC
ATCAGGGAGATACACACAGCCGACCCCAACGTCTTTATTGATCACACTGA
AACGTTCACATTGCCAGGTAGATGCTGATGCTGATCCTGACTGAGCTGAT
TGCCAGCCATTCTCCTCAAGCCTTTGAGCCTCGTAACAGGAGAAAACCCA
TGAGCGTGTGCAGAATAATCCTTTTCCCTCGTATCGGGCTGGACTAAGCT
AAACTAACACGATTTGATTTCCTCAGAGGATGGAGTCAGGGGGGAAGCAA
CCATCACTGTCTGTTTCAACGACGTGGAGAATATTACCTTTGACAAGTTT
GAGCTGGTGCTTGAGAGCGAGCCTGGGGCCACCTTCGCGCCCACGCTGGC
CCCACCACCTTACACATGCATGCAAGGTATGAATAAAGCATAACCTAATT
GTGATGAGAACTAATTCGCAATTGGCGTGCATGCCTACTTAACTGCTTTC
TTCTTTCCTTTCTTTGCTTTCCTCTTCACAGATGCGCTGCTCCCTGGTGT
CAAGCCTGGAAGCTGTCTCCAGGTGCACCCCTGCCATGCCTGCCGGCATC
TGCTCTTTAGGAAGAGTCAGACCTCTCATGTTACTCTCCCGTGCAACATT
ACAGGTGCTGTGCTTCCCTGACAGGATAGCATTCGATGAGCCATTCCATG
CTACTGTCACATGGTGCCTTGACAGGGCAAGACCTGCTGCTCTCAGGTAG
TAACTAAATGCCTATTACAGCTAGTGTCTTGAAGGTTAGGGCCAGGTTAC
TGCAGCCTAATGCTTTGAGATCAACTAAGCACTGCCGCGCTGTCTCTCTC
TCTCTCTCTCTCTCTCCCAAACTTTTATTAGCTTTGACACCCTTGACAAC
ATTGAGAAGTTCTTCATCAGCTATGGCGAGGGTGGTTCAACGAAAACATT
TTACGATGATGGTGAGGAAGCCTCTGCCGCTGCATCAGTACAGCACCCTT
GCCAGTCATCTTGCTTCTCTGGCTCATCCTCATTGTGCCCTTCCTTCCTT
TTCTTCCCCACACCCTTCAGAGGAAGAGGCCTACCAGTGCGGTATCAACA
CATTTGAAATAACGCTGCCTGCGGACTTGACCATTGACAACCCCGAGTTC
AGTGGGGATGTTATGTACAAGTATTTCATTACCCCCATCTTCTACGGGGA
TGACGAAAAGGTTAGGCACCATCAAAGGCAGCCACTTGTTCGGCAGCTTA
CTCATTCATTGCATTAACCTCGGGGACAATTGCTGACTTGTACCAACACT
CGCTCACGCTCACTTCCATGGTTTTATCCATAGGACACACCTCAGCTGCT
TCAAGATCCATTCCCTAACATGCTTGGTGAGTTGTAGCCTTCTCATCCTC
CTCACATTCTTTTCTTCACCCTTGCTGCTGCTGCTATTCTTGCAATCCTC
CCTTTTGCTTCACTTCACCTTGAACTCCTCAAACTAACTCCCTTCTCATC
ATTCTAGCCGAGGCTGGCTGGAACTTGTTGCCAGACCAGTATGGAGCTTT
GGAGGGTGACTGCCCTGTTGTGGACTTTGAGCTCTGGAACCTGACTGAGT
AAGTTGCCTGAGCGCTATTCAGCACAGAATGCATCACAACTTACCCATTC
ATGCCTTCCGGTCCATTTTCCCTCCCCTTTTCCCTACTCAGGCCTGAACC
ATATGATGCCATTGACATTGAGATCCCTGAGTGCCATGAGAACGGCAAGG
ACCTTGACATCACTTTTGGTAAGTCAGCTAGAGAGCTTGCATATCTTCTA
TATTGCTTGCGTCTCACACCTCACACCTCTGCCAGACGTCGAGCTCAACA
CCATTGAGGAGAGCGAAATCACTTGCAACCTAATGGGCGGCCAGGGTGTG
GATGTATACCTGAGCGAAGAAGAAATTTTTGTGGCGCAGGTGAGAGCGCC
CCCTGCCTCTCTTCTCTAACTCTTTGTCACAGTGTCAGCTAAGCTTCTGG
TGAATTGCCAACGTGATAGAGACGGTTGCTTGACCAACTATTATTACGTA
ACACTTCCTTGTTCGCCTGCCATCACAAAATACACAGCCCGCATGCTAAC
TCCAAGCATTTACACCACTAGAAGGCGGGATCTTAATACTTATTTTGTAC
CGTACTGCCCCCATTCAGGCCTACATGAATGTTGAAGGCAGCGGTCGGTA
TACCATCACTATCCCTGGGGAACTCACTGAAGGGGCTGAGATTGTAGAGA
ACCCCTACGTCAGCTGCTGGCTAGGAAAGCCAGGTATGAGCTCTTAAACG
AGCCACGCACAACTCATATCATGCCTTCTGCACCAACGCCTTTTATATGT
GTAGTGCCATGAGCCCTTCTCTCACGTGACCTGCCCTGCCTCCCAAACTT
CCAACAGACTCATACGGCGTCTGGGAGCCTGGACTGAACACTGAGTACTT
CTTGGTGAGTGGGTACCTCCTCCTACTAACACTAGCCTACTACTAGATTA
CTACTAGATTCTTCACTCACATTCTCGTCCTCTTGTCATCACCTCAGAGC
ATGGACTACTGTGGGGAGGGAGGGTATGCTGGTTTCGACTAAAGTGACCA
GTGACCCCGT
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_1022:6234..10343-

>mRNA_C-australica_Contig_1022.6.1 ID=mRNA_C-australica_Contig_1022.6.1|Name=mRNA_C-australica_Contig_1022.6.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1587bp|location=Sequence derived from alignment at C-australica_Contig_1022:6234..10343- (Chrysoparadoxa australica CS_1217)
ATGCGAGCCCCTCCTCAATGTGTGTTGCTAGGCCTATTCCTCGCGCAGGG
CTTGGCCTTGACGCCGGAAGAGGTCGATGAGGTGGAGGAGACAACCGAGC
CCGTTGCAGTGCCTCCACCCCCTATCAACATCTACTTCGGAGAGCCTTAC
ACTGGAGAGCCATTCCCCATACCTGGCGTTGTGCAGGCCGAGATGTTTAA
CGTTGGACCTGAGGCATATTTCAATTTTGACTTGGGACTTGAAGGCTTTG
TGAGCGAATTCCGTGCAGGCTCACCAGTAGAAATCACAGCCGTCGGGTTG
TCTCTTGAAGAGCAGAAGGAAGCAGCAGAGAGGGCTGAAGAGGAGGAGAT
TGTGGTTGCAGCAGCCCCTGACCTTCCCGAGAACTACAAGATTGACTACA
TCGTGCCGGGAGAGTTCCTGAGCTACGAGGTCCTAATCACTGAGCCGGGT
GACTACTCAGCCATCATCAGCACTTCAGCTGTTGCGCCGCAGAAGCCCTT
TGACATCAGCCTCAAGCTGAATGATGATAGGTGCGGGGTTGAGGAGAACA
CCCTTGTTCGCTTCCAAAGGCGCATCAGGGAGATACACACAGCCGACCCC
AACGTCTTTATTGATCACACTGAAACGTTCACATTGCCAGAGGATGGAGT
CAGGGGGGAAGCAACCATCACTGTCTGTTTCAACGACGTGGAGAATATTA
CCTTTGACAAGTTTGAGCTGGTGCTTGAGAGCGAGCCTGGGGCCACCTTC
GCGCCCACGCTGGCCCCACCACCTTACACATGCATGCAAGATGCGCTGCT
CCCTGGTGTCAAGCCTGGAAGCTGTCTCCAGGTGCTGTGCTTCCCTGACA
GGATAGCATTCGATGAGCCATTCCATGCTACTGTCACATGGTGCCTTGAC
AGGGCAAGACCTGCTGCTCTCAGCTTTGACACCCTTGACAACATTGAGAA
GTTCTTCATCAGCTATGGCGAGGGTGGTTCAACGAAAACATTTTACGATG
ATGAGGAAGAGGCCTACCAGTGCGGTATCAACACATTTGAAATAACGCTG
CCTGCGGACTTGACCATTGACAACCCCGAGTTCAGTGGGGATGTTATGTA
CAAGTATTTCATTACCCCCATCTTCTACGGGGATGACGAAAAGGACACAC
CTCAGCTGCTTCAAGATCCATTCCCTAACATGCTTGCCGAGGCTGGCTGG
AACTTGTTGCCAGACCAGTATGGAGCTTTGGAGGGTGACTGCCCTGTTGT
GGACTTTGAGCTCTGGAACCTGACTGAGCCTGAACCATATGATGCCATTG
ACATTGAGATCCCTGAGTGCCATGAGAACGGCAAGGACCTTGACATCACT
TTTGACGTCGAGCTCAACACCATTGAGGAGAGCGAAATCACTTGCAACCT
AATGGGCGGCCAGGGTGTGGATGTATACCTGAGCGAAGAAGAAATTTTTG
TGGCGCAGGCCTACATGAATGTTGAAGGCAGCGGTCGGTATACCATCACT
ATCCCTGGGGAACTCACTGAAGGGGCTGAGATTGTAGAGAACCCCTACGT
CAGCTGCTGGCTAGGAAAGCCAGGTATGAGCTCTTAA
back to top