mRNA_C-australica_Contig_1022.6.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_1022.6.1 vs. uniprot
Match: A0A835Z2T5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2T5_9STRA) HSP 1 Score: 120 bits (300), Expect = 5.460e-26 Identity = 83/228 (36.40%), Postives = 115/228 (50.44%), Query Frame = 3 Query: 951 CMQDALLPGVKPGSCLQVLCFPDRIAFDEPFHATVTWCLDRARPAALSFDTLDNIEKFFISYGEGGSTKTFYDDEEEAYQCGINTFEITLPADLTIDNPEFSGDVMYKYFITPIFYGDDEKDTPQLLQDPFPNMLAEAGWNLLPDQYGALEGDCPVVDFELWNLTEPEPYDAIDIEI-PECHENGKDLDITFDVELNTIEESEITCNLMGGQGVDVYLSEEEIFVAQA 1631
C Q PGVKPGSC QV+C P IA PFH V WCL R R + L DTLD K + YG G T E +QCG +TFE T+ A E++ V+++YF+TP+ +GD D + ++P+PN +A G + P Y L DC + L N D ID P C + G+ + L + +++ NL G G D YL ++IFVA++
Sbjct: 48 CKQPTPPPGVKPGSCFQVVCLPTSIAIGAPFHTRVRWCLQRPRRSHLVVDTLDVNTKEW--YGGDGYTP------EGEWQCGEHTFEQTMNAVPDPATGEYN--VLWRYFVTPV-WGDGRYDIRE--EEPYPNAIAATGIDRQP-LYDGLVDDCGLRPDRLVNFPPTGVQDGIDFPYTPYCIQPGEPFFVAVFTHLLSAPAADLHVNLHIGTGPDKYLGPDDIFVAES 261 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1022.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1022.6.1 >prot_C-australica_Contig_1022.6.1 ID=prot_C-australica_Contig_1022.6.1|Name=mRNA_C-australica_Contig_1022.6.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=529bp MRAPPQCVLLGLFLAQGLALTPEEVDEVEETTEPVAVPPPPINIYFGEPYback to top mRNA from alignment at C-australica_Contig_1022:6234..10343- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1022.6.1 ID=mRNA_C-australica_Contig_1022.6.1|Name=mRNA_C-australica_Contig_1022.6.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=4110bp|location=Sequence derived from alignment at C-australica_Contig_1022:6234..10343- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1022:6234..10343- >mRNA_C-australica_Contig_1022.6.1 ID=mRNA_C-australica_Contig_1022.6.1|Name=mRNA_C-australica_Contig_1022.6.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1587bp|location=Sequence derived from alignment at C-australica_Contig_1022:6234..10343- (Chrysoparadoxa australica CS_1217)back to top |