mRNA_C-australica_Contig_102.6.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_102.6.1
Unique NamemRNA_C-australica_Contig_102.6.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_102.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_102contigC-australica_Contig_102:14681..15985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1127
Hectar predicted targeting categoryother localisation
Exons3
Cds size885
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586754.2072027-UTR-C-australica_Contig_102:14680..148791682586754.2072027-UTR-C-australica_Contig_102:14680..14879Chrysoparadoxa australica CS_1217UTRC-australica_Contig_102 14681..14879 +
1682586754.2176778-UTR-C-australica_Contig_102:14961..149681682586754.2176778-UTR-C-australica_Contig_102:14961..14968Chrysoparadoxa australica CS_1217UTRC-australica_Contig_102 14962..14968 +
1682586754.2515113-UTR-C-australica_Contig_102:15949..159851682586754.2515113-UTR-C-australica_Contig_102:15949..15985Chrysoparadoxa australica CS_1217UTRC-australica_Contig_102 15950..15985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586754.2277076-CDS-C-australica_Contig_102:14968..151661682586754.2277076-CDS-C-australica_Contig_102:14968..15166Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 14969..15166 +
1682586754.2394583-CDS-C-australica_Contig_102:15262..159491682586754.2394583-CDS-C-australica_Contig_102:15262..15949Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 15263..15949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_102.6.1prot_C-australica_Contig_102.6.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_102 14969..15949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_102.6.1

>prot_C-australica_Contig_102.6.1 ID=prot_C-australica_Contig_102.6.1|Name=mRNA_C-australica_Contig_102.6.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=295bp
MNLPAQPRPQEGPLGCSTLLRQVFGYIGRGQSCFLRVNAQWNDIYVQLFG
AKTTYDAAVASVARVEVAAAEGCPLTIKLFSKAAESGNIGVCMKLKSLSC
PCSDLTCYAAATGGHLKLLRWLREGPDPCPWRLTTCMAAARGGHMELLQW
LRAGADPCPWSVDSCLAAAEGGHLEILQWLRGGTCPCPWYEDVCLIAARG
GHLEMLKWLREGPDPCPWNEDTCEAAANGGHLEVLKWLREGPDVCPWNGW
CCPAWTAREHPDHFSCNFDYGEDSEQFTSIVNWVHANGHPCDCS*
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mRNA from alignment at C-australica_Contig_102:14681..15985+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_102.6.1 ID=mRNA_C-australica_Contig_102.6.1|Name=mRNA_C-australica_Contig_102.6.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1305bp|location=Sequence derived from alignment at C-australica_Contig_102:14681..15985+ (Chrysoparadoxa australica CS_1217)
GTAGCTGCTTGCTTTGCCTTTTGCCTTTCGCCCAGCTATTGCCTCGAGGA
AGTAAGCTTCGTTTCTTTATCGACAAGCTTGCCCTAAAACTCGACAAGGT
TGCGCTATCTCCTGAAGAGGGCCCTTTCTATTCCGTGAGACCAGTCCGTA
GGACAAGAGCTCGTCATCATAGCCCTCAACTTCCCTTCAAACTTCCAAGG
TAATGCCCTCCTGGCCTTTCTTTATAAACCCCCTCTGAGCCCTCCCTAAA
CTCCCTCCTCTGCCCCTTTTAATTGCCACAGCATCCTCATGAATCTTCCA
GCGCAGCCACGACCACAGGAAGGGCCACTGGGGTGCAGCACCTTGCTGAG
GCAAGTGTTTGGATACATAGGAAGGGGACAAAGTTGCTTCCTGAGGGTCA
ATGCCCAGTGGAATGACATCTATGTGCAGCTCTTCGGTGCCAAGACTACC
TATGATGCAGCAGTGGCATCAGTAGCACGTGTTGAGGTGAGCTGGTAGCA
GCAAGACTGTGCTTGATGAATTAACCATGCACCTCATGCATATCATCTGT
CTTTTAACCCTAGTCTCTTGCCTAATCCTCAGGTAGCTGCTGCTGAAGGG
TGTCCCCTGACAATAAAGCTCTTCTCCAAGGCAGCTGAGAGTGGCAATAT
AGGGGTTTGCATGAAGCTTAAGAGCTTGAGCTGCCCTTGCTCTGACTTGA
CATGTTATGCAGCTGCTACTGGAGGGCATTTAAAGCTACTTCGATGGCTA
AGGGAAGGTCCAGACCCTTGCCCTTGGCGCCTGACAACCTGTATGGCAGC
TGCACGGGGAGGGCACATGGAGCTACTTCAGTGGCTAAGGGCAGGTGCAG
ACCCATGCCCTTGGTCTGTAGACAGCTGCCTAGCAGCTGCTGAAGGAGGC
CACCTGGAGATACTTCAGTGGCTAAGGGGTGGTACATGTCCTTGCCCTTG
GTATGAGGACGTTTGTTTAATAGCTGCCAGAGGGGGGCACCTGGAGATGC
TGAAATGGCTAAGGGAAGGCCCAGATCCATGCCCTTGGAATGAAGACACC
TGTGAAGCAGCTGCTAATGGAGGGCACCTGGAGGTACTTAAATGGCTAAG
GGAAGGCCCAGATGTGTGCCCTTGGAATGGGTGGTGCTGCCCTGCTTGGA
CAGCCAGGGAGCATCCTGATCATTTTTCTTGCAATTTTGATTATGGCGAA
GATTCAGAGCAGTTCACCTCTATAGTGAACTGGGTCCATGCAAATGGGCA
CCCATGTGATTGCTCTTAAGTTGGTAATGAAATGAAAGCTGGTAAATTTC
ACCTA
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Coding sequence (CDS) from alignment at C-australica_Contig_102:14681..15985+

>mRNA_C-australica_Contig_102.6.1 ID=mRNA_C-australica_Contig_102.6.1|Name=mRNA_C-australica_Contig_102.6.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=885bp|location=Sequence derived from alignment at C-australica_Contig_102:14681..15985+ (Chrysoparadoxa australica CS_1217)
ATGAATCTTCCAGCGCAGCCACGACCACAGGAAGGGCCACTGGGGTGCAG
CACCTTGCTGAGGCAAGTGTTTGGATACATAGGAAGGGGACAAAGTTGCT
TCCTGAGGGTCAATGCCCAGTGGAATGACATCTATGTGCAGCTCTTCGGT
GCCAAGACTACCTATGATGCAGCAGTGGCATCAGTAGCACGTGTTGAGGT
AGCTGCTGCTGAAGGGTGTCCCCTGACAATAAAGCTCTTCTCCAAGGCAG
CTGAGAGTGGCAATATAGGGGTTTGCATGAAGCTTAAGAGCTTGAGCTGC
CCTTGCTCTGACTTGACATGTTATGCAGCTGCTACTGGAGGGCATTTAAA
GCTACTTCGATGGCTAAGGGAAGGTCCAGACCCTTGCCCTTGGCGCCTGA
CAACCTGTATGGCAGCTGCACGGGGAGGGCACATGGAGCTACTTCAGTGG
CTAAGGGCAGGTGCAGACCCATGCCCTTGGTCTGTAGACAGCTGCCTAGC
AGCTGCTGAAGGAGGCCACCTGGAGATACTTCAGTGGCTAAGGGGTGGTA
CATGTCCTTGCCCTTGGTATGAGGACGTTTGTTTAATAGCTGCCAGAGGG
GGGCACCTGGAGATGCTGAAATGGCTAAGGGAAGGCCCAGATCCATGCCC
TTGGAATGAAGACACCTGTGAAGCAGCTGCTAATGGAGGGCACCTGGAGG
TACTTAAATGGCTAAGGGAAGGCCCAGATGTGTGCCCTTGGAATGGGTGG
TGCTGCCCTGCTTGGACAGCCAGGGAGCATCCTGATCATTTTTCTTGCAA
TTTTGATTATGGCGAAGATTCAGAGCAGTTCACCTCTATAGTGAACTGGG
TCCATGCAAATGGGCACCCATGTGATTGCTCTTAA
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