mRNA_C-australica_Contig_10168.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A7V8QHJ1_9GAMM (Biopolymer transporter ExbD n=1 Tax=Ectothiorhodospiraceae bacterium WFHF3C12 TaxID=1914406 RepID=A0A7V8QHJ1_9GAMM)

HSP 1 Score: 208 bits (530), Expect = 3.260e-67
Identity = 104/134 (77.61%), Postives = 121/134 (90.30%), Query Frame = 1

Query:    1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
            +YRQR  + +Q I+ISPLIDMVFILLIFFMVSTTFVKDMDLDI+RPKAS+A PSSTKAIR+YI+ +G+TYLDGQP++TWVIQSRL+DLL+ STG SVLVVTD NVP+ KL+ VVDQARL+GA DVGVAT QEAG
Sbjct:    2 RYRQRREQTEQDINISPLIDMVFILLIFFMVSTTFVKDMDLDIERPKASSATPSSTKAIRLYIDNNGETYLDGQPIRTWVIQSRLRDLLKTSTGSSVLVVTDENVPASKLITVVDQARLSGAEDVGVATVQEAG 135

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BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A7C3HDY1_9GAMM (Biopolymer transporter ExbD n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C3HDY1_9GAMM)

HSP 1 Score: 198 bits (503), Expect = 3.970e-63
Identity = 101/134 (75.37%), Postives = 114/134 (85.07%), Query Frame = 1

Query:    1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
            +YR+RE  EQ  IDISPLIDMVFILLIFFMVS TFVKDMDLDI RPKAS++ PSSTKAIR+YI+  G T+LDGQPV+TWVIQSRL+D+L  +TG SVLVVTD NV + KL+EVVDQ RLAGA DVGV T QEAG
Sbjct:    2 RYRERENTEQD-IDISPLIDMVFILLIFFMVSATFVKDMDLDIQRPKASSSTPSSTKAIRVYIDSGGNTFLDGQPVRTWVIQSRLRDMLRQTTGASVLVVTDANVSANKLIEVVDQCRLAGAEDVGVVTEQEAG 134

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BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: UPI001CA710F4 (biopolymer transporter ExbD n=1 Tax=Algiphilus sp. NNCM1 TaxID=2834409 RepID=UPI001CA710F4)

HSP 1 Score: 190 bits (483), Expect = 4.870e-60
Identity = 98/132 (74.24%), Postives = 108/132 (81.82%), Query Frame = 1

Query:    7 RQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
            R R+  E  GIDISPLIDMVFILLIFFMVSTTFVKDMDLDI+RP A TA+ SSTKAIR+YI+  G TYLDGQPV+ WVIQSRL+D+L  +    VLVVTD  VPS +LVEVVDQ RLAGA DVGVAT QEAG
Sbjct:    4 RFRKSREPSGIDISPLIDMVFILLIFFMVSTTFVKDMDLDINRPSAQTAQQSSTKAIRVYIDNQGNTYLDGQPVRVWVIQSRLRDMLAAAGNPGVLVVTDSEVPSGRLVEVVDQCRLAGAEDVGVATEQEAG 135

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BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A7Y2YI11_9GAMM (Biopolymer transporter ExbD n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y2YI11_9GAMM)

HSP 1 Score: 185 bits (469), Expect = 6.180e-58
Identity = 97/134 (72.39%), Postives = 115/134 (85.82%), Query Frame = 1

Query:    1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
            +YR+R+ E  Q I+ISPLIDMVFILLIFFMVSTTFVKDM LD+DRP AS+A  +STKAIR+YI+ SG+ YLDG+PV+ WVIQSRL+D L+ ST  SVLV+TD  VP+ KLVEVVDQARLAGA+DVGVAT +EAG
Sbjct:    2 RYRERK-ESIQDINISPLIDMVFILLIFFMVSTTFVKDMKLDLDRPAASSAVTASTKAIRLYIDSSGEAYLDGEPVRIWVIQSRLRDQLKTSTAKSVLVITDDGVPAGKLVEVVDQARLAGATDVGVATVEEAG 134

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BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A372BU25_9GAMM (Biopolymer transporter ExbD n=4 Tax=Proteobacteria TaxID=1224 RepID=A0A372BU25_9GAMM)

HSP 1 Score: 185 bits (469), Expect = 6.180e-58
Identity = 92/134 (68.66%), Postives = 117/134 (87.31%), Query Frame = 1

Query:    1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
            ++R+R   EQ  +DISPLIDMVFILLIFFMVSTTFVKDM LD++RP A+++E +STKAIR+YI+ SG+T+LDGQP++TWVIQS+L+D+L+ +   SVLVVTD NVP+ KLVEVVDQAR +GA+DVGVAT +EAG
Sbjct:    2 RFRERANTEQ-AVDISPLIDMVFILLIFFMVSTTFVKDMKLDLERPSATSSEQASTKAIRLYIDNSGETWLDGQPIRTWVIQSKLRDMLQGAASQSVLVVTDSNVPASKLVEVVDQARRSGAADVGVATVEEAG 134

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BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A0K0XX34_9GAMM (Biopolymer transporter ExbD n=1 Tax=Wenzhouxiangella marina TaxID=1579979 RepID=A0A0K0XX34_9GAMM)

HSP 1 Score: 185 bits (469), Expect = 6.180e-58
Identity = 94/134 (70.15%), Postives = 115/134 (85.82%), Query Frame = 1

Query:    1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
            ++R+R   +QQ +DISPLIDMVFILLIFFMVSTTFVKDM LD++RP A +A  +STKA+R+YI+ +G TYLDGQP+Q WVIQSRL++LL  S   SVLVVTDGNVP+++LVEVVDQAR AGA+DVGVAT +EAG
Sbjct:    2 RFRERTDTQQQ-VDISPLIDMVFILLIFFMVSTTFVKDMKLDLNRPSAESATTASTKAVRLYIDNTGATYLDGQPIQVWVIQSRLRELLSGSAEQSVLVVTDGNVPAERLVEVVDQARRAGAADVGVATVEEAG 134

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BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A2E6REK7_9GAMM (Biopolymer transporter ExbD n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E6REK7_9GAMM)

HSP 1 Score: 184 bits (468), Expect = 8.780e-58
Identity = 96/134 (71.64%), Postives = 111/134 (82.84%), Query Frame = 1

Query:    1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
            ++R+R   EQ G+DISPLIDMVFILLIFFMVSTTFVKDM LD++RP ASTA  +STKAIR+YI+ +G  YLDGQPV+ WVIQSR++DLL  S  GSVLVVTD  VP+ +LVEVVDQAR AGA DVGVAT  EAG
Sbjct:    2 RFRERTHHEQ-GVDISPLIDMVFILLIFFMVSTTFVKDMKLDLNRPSASTASAASTKAIRLYIDNAGDVYLDGQPVRVWVIQSRVRDLLASSASGSVLVVTDDQVPAGRLVEVVDQARRAGAQDVGVATVDEAG 134

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BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A2I2A7N6_9GAMM (Biopolymer transporter ExbD n=2 Tax=Hydrogenovibrio sp. SC-1 TaxID=2065820 RepID=A0A2I2A7N6_9GAMM)

HSP 1 Score: 184 bits (467), Expect = 1.170e-57
Identity = 90/134 (67.16%), Postives = 114/134 (85.07%), Query Frame = 1

Query:    1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
            +Y++R+ ++Q  ID+SPLIDMVFILLIFFMVS TFVKDMDL+I+RPKA+++ PSSTKA+R+YI+ +G TYLD QPV+TWVIQS+L+D+L  ST  +VLVVTD  VP++KL+EVVDQ RLAGA DVGV T  E G
Sbjct:    2 RYKKRQSQDQ-SIDMSPLIDMVFILLIFFMVSATFVKDMDLEINRPKATSSSPSSTKAVRVYIDTNGDTYLDNQPVRTWVIQSKLRDMLRTSTESAVLVVTDEGVPARKLIEVVDQCRLAGAEDVGVVTEYEGG 134

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BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A5N0T460_9GAMM (Biopolymer transporter ExbD n=1 Tax=Wenzhouxiangella sp. W260 TaxID=2613842 RepID=A0A5N0T460_9GAMM)

HSP 1 Score: 181 bits (458), Expect = 2.930e-56
Identity = 94/134 (70.15%), Postives = 114/134 (85.07%), Query Frame = 1

Query:    1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
            +YR+R+ +    I+ISPLIDMVFILLIFFMVSTTFVKDM LD++RP ASTA  +STKAIR+YI+ +G  YLDG+PV+ WVIQSR++DLL  STG SVLV+TD  VP+ +LVEVVDQARLAGA+DVGVAT +EAG
Sbjct:    2 RYRERK-DTVDDINISPLIDMVFILLIFFMVSTTFVKDMKLDLNRPAASTATTASTKAIRLYIDNAGDIYLDGEPVRVWVIQSRIRDLLAGSTGKSVLVITDDGVPAGRLVEVVDQARLAGATDVGVATVEEAG 134

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BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A0X3TBJ1_9GAMM (Biopolymer transporter ExbD n=2 Tax=Thiomicrospira sp. WB1 TaxID=1685380 RepID=A0A0X3TBJ1_9GAMM)

HSP 1 Score: 180 bits (457), Expect = 3.900e-56
Identity = 90/134 (67.16%), Postives = 112/134 (83.58%), Query Frame = 1

Query:    1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
            +YR+R  +E   IDISPLIDMVFILLIFFMVS TFVKDMDL+I+RPKAS++ PSST+A+R+YI+ SG TYLD +P++ W+IQS+L+D+L  ST  +VLVVTD +VPS+KL+EVVDQ RLAGA DVGV T  E G
Sbjct:    2 RYRKRT-QEDNNIDISPLIDMVFILLIFFMVSATFVKDMDLEINRPKASSSTPSSTQALRVYIDQSGDTYLDEKPIRVWMIQSKLRDMLRTSTDSTVLVVTDESVPSRKLIEVVDQCRLAGAEDVGVVTEAEGG 134

The following BLAST results are available for this feature:

BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot

BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

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POSITION

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Match Name	E-value	Identity	Description
A0A7V8QHJ1_9GAMM	3.260e-67	77.61	Biopolymer transporter ExbD n=1 Tax=Ectothiorhodos...	[more]
A0A7C3HDY1_9GAMM	3.970e-63	75.37	Biopolymer transporter ExbD n=1 Tax=Gammaproteobac...	[more]
UPI001CA710F4	4.870e-60	74.24	biopolymer transporter ExbD n=1 Tax=Algiphilus sp....	[more]
A0A7Y2YI11_9GAMM	6.180e-58	72.39	Biopolymer transporter ExbD n=1 Tax=Xanthomonadale...	[more]
A0A372BU25_9GAMM	6.180e-58	68.66	Biopolymer transporter ExbD n=4 Tax=Proteobacteria...	[more]
A0A0K0XX34_9GAMM	6.180e-58	70.15	Biopolymer transporter ExbD n=1 Tax=Wenzhouxiangel...	[more]
A0A2E6REK7_9GAMM	8.780e-58	71.64	Biopolymer transporter ExbD n=2 Tax=Gammaproteobac...	[more]
A0A2I2A7N6_9GAMM	1.170e-57	67.16	Biopolymer transporter ExbD n=2 Tax=Hydrogenovibri...	[more]
A0A5N0T460_9GAMM	2.930e-56	70.15	Biopolymer transporter ExbD n=1 Tax=Wenzhouxiangel...	[more]
A0A0X3TBJ1_9GAMM	3.900e-56	67.16	Biopolymer transporter ExbD n=2 Tax=Thiomicrospira...	[more]

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Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-australica_Contig_10168:1..414+
coding sequence from alignment at C-australica_Contig_10168:1..414+

protein sequence of mRNA_C-australica_Contig_10168.1.1

>prot_C-australica_Contig_10168.1.1 ID=prot_C-australica_Contig_10168.1.1|Name=mRNA_C-australica_Contig_10168.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=138bp
KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKAST
AEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVV
TDGNVPSQKLVEVVDQARLAGASDVGVATRQEAGGRT*

mRNA from alignment at C-australica_Contig_10168:1..414+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-australica_Contig_10168.1.1 ID=mRNA_C-australica_Contig_10168.1.1|Name=mRNA_C-australica_Contig_10168.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=414bp|location=Sequence derived from alignment at C-australica_Contig_10168:1..414+ (Chrysoparadoxa australica CS_1217)
AAGTACCGGCAACGGGAAGGCGAAGAGCAGCAGGGCATCGACATCTCGCC
GCTGATCGACATGGTTTTCATCCTGCTGATCTTCTTCATGGTCAGCACGA
CCTTCGTCAAGGACATGGACCTGGACATCGACCGGCCCAAGGCGTCCACC
GCTGAGCCGTCGTCGACCAAGGCGATCCGCATCTACATCGAAGGGTCCGG
CCAGACCTATCTGGATGGCCAACCGGTGCAGACCTGGGTAATCCAGAGCC
GGCTCAAGGACCTGCTCGAGGTCAGCACCGGTGGCTCGGTGCTGGTCGTG
ACCGACGGCAATGTGCCGTCGCAGAAACTGGTGGAAGTGGTGGATCAGGC
GCGCCTGGCCGGCGCGTCCGACGTGGGCGTTGCCACCCGGCAGGAAGCCG
GCGGCCGCACCTGA

Coding sequence (CDS) from alignment at C-australica_Contig_10168:1..414+

>mRNA_C-australica_Contig_10168.1.1 ID=mRNA_C-australica_Contig_10168.1.1|Name=mRNA_C-australica_Contig_10168.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=414bp|location=Sequence derived from alignment at C-australica_Contig_10168:1..414+ (Chrysoparadoxa australica CS_1217)
AAGTACCGGCAACGGGAAGGCGAAGAGCAGCAGGGCATCGACATCTCGCC
GCTGATCGACATGGTTTTCATCCTGCTGATCTTCTTCATGGTCAGCACGA
CCTTCGTCAAGGACATGGACCTGGACATCGACCGGCCCAAGGCGTCCACC
GCTGAGCCGTCGTCGACCAAGGCGATCCGCATCTACATCGAAGGGTCCGG
CCAGACCTATCTGGATGGCCAACCGGTGCAGACCTGGGTAATCCAGAGCC
GGCTCAAGGACCTGCTCGAGGTCAGCACCGGTGGCTCGGTGCTGGTCGTG
ACCGACGGCAATGTGCCGTCGCAGAAACTGGTGGAAGTGGTGGATCAGGC
GCGCCTGGCCGGCGCGTCCGACGTGGGCGTTGCCACCCGGCAGGAAGCCG
GCGGCCGCACCTGA