mRNA_C-australica_Contig_10168.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10168.1.1
Unique NamemRNA_C-australica_Contig_10168.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A7V8QHJ1_9GAMM (Biopolymer transporter ExbD n=1 Tax=Ectothiorhodospiraceae bacterium WFHF3C12 TaxID=1914406 RepID=A0A7V8QHJ1_9GAMM)

HSP 1 Score: 208 bits (530), Expect = 3.260e-67
Identity = 104/134 (77.61%), Postives = 121/134 (90.30%), Query Frame = 1 
Query:    1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
            +YRQR  + +Q I+ISPLIDMVFILLIFFMVSTTFVKDMDLDI+RPKAS+A PSSTKAIR+YI+ +G+TYLDGQP++TWVIQSRL+DLL+ STG SVLVVTD NVP+ KL+ VVDQARL+GA DVGVAT QEAG
Sbjct:    2 RYRQRREQTEQDINISPLIDMVFILLIFFMVSTTFVKDMDLDIERPKASSATPSSTKAIRLYIDNNGETYLDGQPIRTWVIQSRLRDLLKTSTGSSVLVVTDENVPASKLITVVDQARLSGAEDVGVATVQEAG 135
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BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A7C3HDY1_9GAMM (Biopolymer transporter ExbD n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C3HDY1_9GAMM)

HSP 1 Score: 198 bits (503), Expect = 3.970e-63
Identity = 101/134 (75.37%), Postives = 114/134 (85.07%), Query Frame = 1 
Query:    1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
            +YR+RE  EQ  IDISPLIDMVFILLIFFMVS TFVKDMDLDI RPKAS++ PSSTKAIR+YI+  G T+LDGQPV+TWVIQSRL+D+L  +TG SVLVVTD NV + KL+EVVDQ RLAGA DVGV T QEAG
Sbjct:    2 RYRERENTEQD-IDISPLIDMVFILLIFFMVSATFVKDMDLDIQRPKASSSTPSSTKAIRVYIDSGGNTFLDGQPVRTWVIQSRLRDMLRQTTGASVLVVTDANVSANKLIEVVDQCRLAGAEDVGVVTEQEAG 134
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BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: UPI001CA710F4 (biopolymer transporter ExbD n=1 Tax=Algiphilus sp. NNCM1 TaxID=2834409 RepID=UPI001CA710F4)

HSP 1 Score: 190 bits (483), Expect = 4.870e-60
Identity = 98/132 (74.24%), Postives = 108/132 (81.82%), Query Frame = 1 
Query:    7 RQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
            R R+  E  GIDISPLIDMVFILLIFFMVSTTFVKDMDLDI+RP A TA+ SSTKAIR+YI+  G TYLDGQPV+ WVIQSRL+D+L  +    VLVVTD  VPS +LVEVVDQ RLAGA DVGVAT QEAG
Sbjct:    4 RFRKSREPSGIDISPLIDMVFILLIFFMVSTTFVKDMDLDINRPSAQTAQQSSTKAIRVYIDNQGNTYLDGQPVRVWVIQSRLRDMLAAAGNPGVLVVTDSEVPSGRLVEVVDQCRLAGAEDVGVATEQEAG 135
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BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A7Y2YI11_9GAMM (Biopolymer transporter ExbD n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y2YI11_9GAMM)

HSP 1 Score: 185 bits (469), Expect = 6.180e-58
Identity = 97/134 (72.39%), Postives = 115/134 (85.82%), Query Frame = 1 
Query:    1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
            +YR+R+ E  Q I+ISPLIDMVFILLIFFMVSTTFVKDM LD+DRP AS+A  +STKAIR+YI+ SG+ YLDG+PV+ WVIQSRL+D L+ ST  SVLV+TD  VP+ KLVEVVDQARLAGA+DVGVAT +EAG
Sbjct:    2 RYRERK-ESIQDINISPLIDMVFILLIFFMVSTTFVKDMKLDLDRPAASSAVTASTKAIRLYIDSSGEAYLDGEPVRIWVIQSRLRDQLKTSTAKSVLVITDDGVPAGKLVEVVDQARLAGATDVGVATVEEAG 134
[Close]
BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A372BU25_9GAMM (Biopolymer transporter ExbD n=4 Tax=Proteobacteria TaxID=1224 RepID=A0A372BU25_9GAMM)

HSP 1 Score: 185 bits (469), Expect = 6.180e-58
Identity = 92/134 (68.66%), Postives = 117/134 (87.31%), Query Frame = 1 
Query:    1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
            ++R+R   EQ  +DISPLIDMVFILLIFFMVSTTFVKDM LD++RP A+++E +STKAIR+YI+ SG+T+LDGQP++TWVIQS+L+D+L+ +   SVLVVTD NVP+ KLVEVVDQAR +GA+DVGVAT +EAG
Sbjct:    2 RFRERANTEQ-AVDISPLIDMVFILLIFFMVSTTFVKDMKLDLERPSATSSEQASTKAIRLYIDNSGETWLDGQPIRTWVIQSKLRDMLQGAASQSVLVVTDSNVPASKLVEVVDQARRSGAADVGVATVEEAG 134
[Close]
BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A0K0XX34_9GAMM (Biopolymer transporter ExbD n=1 Tax=Wenzhouxiangella marina TaxID=1579979 RepID=A0A0K0XX34_9GAMM)

HSP 1 Score: 185 bits (469), Expect = 6.180e-58
Identity = 94/134 (70.15%), Postives = 115/134 (85.82%), Query Frame = 1 
Query:    1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
            ++R+R   +QQ +DISPLIDMVFILLIFFMVSTTFVKDM LD++RP A +A  +STKA+R+YI+ +G TYLDGQP+Q WVIQSRL++LL  S   SVLVVTDGNVP+++LVEVVDQAR AGA+DVGVAT +EAG
Sbjct:    2 RFRERTDTQQQ-VDISPLIDMVFILLIFFMVSTTFVKDMKLDLNRPSAESATTASTKAVRLYIDNTGATYLDGQPIQVWVIQSRLRELLSGSAEQSVLVVTDGNVPAERLVEVVDQARRAGAADVGVATVEEAG 134
[Close]
BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A2E6REK7_9GAMM (Biopolymer transporter ExbD n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E6REK7_9GAMM)

HSP 1 Score: 184 bits (468), Expect = 8.780e-58
Identity = 96/134 (71.64%), Postives = 111/134 (82.84%), Query Frame = 1 
Query:    1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
            ++R+R   EQ G+DISPLIDMVFILLIFFMVSTTFVKDM LD++RP ASTA  +STKAIR+YI+ +G  YLDGQPV+ WVIQSR++DLL  S  GSVLVVTD  VP+ +LVEVVDQAR AGA DVGVAT  EAG
Sbjct:    2 RFRERTHHEQ-GVDISPLIDMVFILLIFFMVSTTFVKDMKLDLNRPSASTASAASTKAIRLYIDNAGDVYLDGQPVRVWVIQSRVRDLLASSASGSVLVVTDDQVPAGRLVEVVDQARRAGAQDVGVATVDEAG 134
[Close]
BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A2I2A7N6_9GAMM (Biopolymer transporter ExbD n=2 Tax=Hydrogenovibrio sp. SC-1 TaxID=2065820 RepID=A0A2I2A7N6_9GAMM)

HSP 1 Score: 184 bits (467), Expect = 1.170e-57
Identity = 90/134 (67.16%), Postives = 114/134 (85.07%), Query Frame = 1 
Query:    1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
            +Y++R+ ++Q  ID+SPLIDMVFILLIFFMVS TFVKDMDL+I+RPKA+++ PSSTKA+R+YI+ +G TYLD QPV+TWVIQS+L+D+L  ST  +VLVVTD  VP++KL+EVVDQ RLAGA DVGV T  E G
Sbjct:    2 RYKKRQSQDQ-SIDMSPLIDMVFILLIFFMVSATFVKDMDLEINRPKATSSSPSSTKAVRVYIDTNGDTYLDNQPVRTWVIQSKLRDMLRTSTESAVLVVTDEGVPARKLIEVVDQCRLAGAEDVGVVTEYEGG 134
[Close]
BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A5N0T460_9GAMM (Biopolymer transporter ExbD n=1 Tax=Wenzhouxiangella sp. W260 TaxID=2613842 RepID=A0A5N0T460_9GAMM)

HSP 1 Score: 181 bits (458), Expect = 2.930e-56
Identity = 94/134 (70.15%), Postives = 114/134 (85.07%), Query Frame = 1 
Query:    1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
            +YR+R+ +    I+ISPLIDMVFILLIFFMVSTTFVKDM LD++RP ASTA  +STKAIR+YI+ +G  YLDG+PV+ WVIQSR++DLL  STG SVLV+TD  VP+ +LVEVVDQARLAGA+DVGVAT +EAG
Sbjct:    2 RYRERK-DTVDDINISPLIDMVFILLIFFMVSTTFVKDMKLDLNRPAASTATTASTKAIRLYIDNAGDIYLDGEPVRVWVIQSRIRDLLAGSTGKSVLVITDDGVPAGRLVEVVDQARLAGATDVGVATVEEAG 134
[Close]
BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A0X3TBJ1_9GAMM (Biopolymer transporter ExbD n=2 Tax=Thiomicrospira sp. WB1 TaxID=1685380 RepID=A0A0X3TBJ1_9GAMM)

HSP 1 Score: 180 bits (457), Expect = 3.900e-56
Identity = 90/134 (67.16%), Postives = 112/134 (83.58%), Query Frame = 1 
Query:    1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
            +YR+R  +E   IDISPLIDMVFILLIFFMVS TFVKDMDL+I+RPKAS++ PSST+A+R+YI+ SG TYLD +P++ W+IQS+L+D+L  ST  +VLVVTD +VPS+KL+EVVDQ RLAGA DVGV T  E G
Sbjct:    2 RYRKRT-QEDNNIDISPLIDMVFILLIFFMVSATFVKDMDLEINRPKASSSTPSSTQALRVYIDQSGDTYLDEKPIRVWMIQSKLRDMLRTSTDSTVLVVTDESVPSRKLIEVVDQCRLAGAEDVGVVTEAEGG 134
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V8QHJ1_9GAMM3.260e-6777.61Biopolymer transporter ExbD n=1 Tax=Ectothiorhodos... [more]
A0A7C3HDY1_9GAMM3.970e-6375.37Biopolymer transporter ExbD n=1 Tax=Gammaproteobac... [more]
UPI001CA710F44.870e-6074.24biopolymer transporter ExbD n=1 Tax=Algiphilus sp.... [more]
A0A7Y2YI11_9GAMM6.180e-5872.39Biopolymer transporter ExbD n=1 Tax=Xanthomonadale... [more]
A0A372BU25_9GAMM6.180e-5868.66Biopolymer transporter ExbD n=4 Tax=Proteobacteria... [more]
A0A0K0XX34_9GAMM6.180e-5870.15Biopolymer transporter ExbD n=1 Tax=Wenzhouxiangel... [more]
A0A2E6REK7_9GAMM8.780e-5871.64Biopolymer transporter ExbD n=2 Tax=Gammaproteobac... [more]
A0A2I2A7N6_9GAMM1.170e-5767.16Biopolymer transporter ExbD n=2 Tax=Hydrogenovibri... [more]
A0A5N0T460_9GAMM2.930e-5670.15Biopolymer transporter ExbD n=1 Tax=Wenzhouxiangel... [more]
A0A0X3TBJ1_9GAMM3.900e-5667.16Biopolymer transporter ExbD n=2 Tax=Thiomicrospira... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10168contigC-australica_Contig_10168:1..414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog472759.Nhal_3836
PFAMsExbD
Model size414
Max annot lvl135613|Chromatiales
KEGG koko:K03559
KEGG TC1.A.30.2.1
Hectar predicted targeting categorysignal anchor
Exons1
Evalue6.39e-57
EggNOG OGsCOG0848@1|root,COG0848@2|Bacteria,1N214@1224|Proteobacteria,1SD80@1236|Gammaproteobacteria,1WZJJ@135613|Chromatiales
DescriptionPFAM Biopolymer transport protein ExbD TolR
Cds size414
COG categoryU
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586751.443953-CDS-C-australica_Contig_10168:0..4141682586751.443953-CDS-C-australica_Contig_10168:0..414Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10168 1..414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10168.1.1prot_C-australica_Contig_10168.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10168 1..414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10168.1.1

>prot_C-australica_Contig_10168.1.1 ID=prot_C-australica_Contig_10168.1.1|Name=mRNA_C-australica_Contig_10168.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=138bp
KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKAST
AEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVV
TDGNVPSQKLVEVVDQARLAGASDVGVATRQEAGGRT*
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mRNA from alignment at C-australica_Contig_10168:1..414+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10168.1.1 ID=mRNA_C-australica_Contig_10168.1.1|Name=mRNA_C-australica_Contig_10168.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=414bp|location=Sequence derived from alignment at C-australica_Contig_10168:1..414+ (Chrysoparadoxa australica CS_1217)
AAGTACCGGCAACGGGAAGGCGAAGAGCAGCAGGGCATCGACATCTCGCC
GCTGATCGACATGGTTTTCATCCTGCTGATCTTCTTCATGGTCAGCACGA
CCTTCGTCAAGGACATGGACCTGGACATCGACCGGCCCAAGGCGTCCACC
GCTGAGCCGTCGTCGACCAAGGCGATCCGCATCTACATCGAAGGGTCCGG
CCAGACCTATCTGGATGGCCAACCGGTGCAGACCTGGGTAATCCAGAGCC
GGCTCAAGGACCTGCTCGAGGTCAGCACCGGTGGCTCGGTGCTGGTCGTG
ACCGACGGCAATGTGCCGTCGCAGAAACTGGTGGAAGTGGTGGATCAGGC
GCGCCTGGCCGGCGCGTCCGACGTGGGCGTTGCCACCCGGCAGGAAGCCG
GCGGCCGCACCTGA
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Coding sequence (CDS) from alignment at C-australica_Contig_10168:1..414+

>mRNA_C-australica_Contig_10168.1.1 ID=mRNA_C-australica_Contig_10168.1.1|Name=mRNA_C-australica_Contig_10168.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=414bp|location=Sequence derived from alignment at C-australica_Contig_10168:1..414+ (Chrysoparadoxa australica CS_1217)
AAGTACCGGCAACGGGAAGGCGAAGAGCAGCAGGGCATCGACATCTCGCC
GCTGATCGACATGGTTTTCATCCTGCTGATCTTCTTCATGGTCAGCACGA
CCTTCGTCAAGGACATGGACCTGGACATCGACCGGCCCAAGGCGTCCACC
GCTGAGCCGTCGTCGACCAAGGCGATCCGCATCTACATCGAAGGGTCCGG
CCAGACCTATCTGGATGGCCAACCGGTGCAGACCTGGGTAATCCAGAGCC
GGCTCAAGGACCTGCTCGAGGTCAGCACCGGTGGCTCGGTGCTGGTCGTG
ACCGACGGCAATGTGCCGTCGCAGAAACTGGTGGAAGTGGTGGATCAGGC
GCGCCTGGCCGGCGCGTCCGACGTGGGCGTTGCCACCCGGCAGGAAGCCG
GCGGCCGCACCTGA
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