mRNA_C-australica_Contig_10168.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A7V8QHJ1_9GAMM (Biopolymer transporter ExbD n=1 Tax=Ectothiorhodospiraceae bacterium WFHF3C12 TaxID=1914406 RepID=A0A7V8QHJ1_9GAMM) HSP 1 Score: 208 bits (530), Expect = 3.260e-67 Identity = 104/134 (77.61%), Postives = 121/134 (90.30%), Query Frame = 1 Query: 1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
+YRQR + +Q I+ISPLIDMVFILLIFFMVSTTFVKDMDLDI+RPKAS+A PSSTKAIR+YI+ +G+TYLDGQP++TWVIQSRL+DLL+ STG SVLVVTD NVP+ KL+ VVDQARL+GA DVGVAT QEAG
Sbjct: 2 RYRQRREQTEQDINISPLIDMVFILLIFFMVSTTFVKDMDLDIERPKASSATPSSTKAIRLYIDNNGETYLDGQPIRTWVIQSRLRDLLKTSTGSSVLVVTDENVPASKLITVVDQARLSGAEDVGVATVQEAG 135
BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A7C3HDY1_9GAMM (Biopolymer transporter ExbD n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C3HDY1_9GAMM) HSP 1 Score: 198 bits (503), Expect = 3.970e-63 Identity = 101/134 (75.37%), Postives = 114/134 (85.07%), Query Frame = 1 Query: 1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
+YR+RE EQ IDISPLIDMVFILLIFFMVS TFVKDMDLDI RPKAS++ PSSTKAIR+YI+ G T+LDGQPV+TWVIQSRL+D+L +TG SVLVVTD NV + KL+EVVDQ RLAGA DVGV T QEAG
Sbjct: 2 RYRERENTEQD-IDISPLIDMVFILLIFFMVSATFVKDMDLDIQRPKASSSTPSSTKAIRVYIDSGGNTFLDGQPVRTWVIQSRLRDMLRQTTGASVLVVTDANVSANKLIEVVDQCRLAGAEDVGVVTEQEAG 134
BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: UPI001CA710F4 (biopolymer transporter ExbD n=1 Tax=Algiphilus sp. NNCM1 TaxID=2834409 RepID=UPI001CA710F4) HSP 1 Score: 190 bits (483), Expect = 4.870e-60 Identity = 98/132 (74.24%), Postives = 108/132 (81.82%), Query Frame = 1 Query: 7 RQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
R R+ E GIDISPLIDMVFILLIFFMVSTTFVKDMDLDI+RP A TA+ SSTKAIR+YI+ G TYLDGQPV+ WVIQSRL+D+L + VLVVTD VPS +LVEVVDQ RLAGA DVGVAT QEAG
Sbjct: 4 RFRKSREPSGIDISPLIDMVFILLIFFMVSTTFVKDMDLDINRPSAQTAQQSSTKAIRVYIDNQGNTYLDGQPVRVWVIQSRLRDMLAAAGNPGVLVVTDSEVPSGRLVEVVDQCRLAGAEDVGVATEQEAG 135
BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A7Y2YI11_9GAMM (Biopolymer transporter ExbD n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y2YI11_9GAMM) HSP 1 Score: 185 bits (469), Expect = 6.180e-58 Identity = 97/134 (72.39%), Postives = 115/134 (85.82%), Query Frame = 1 Query: 1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
+YR+R+ E Q I+ISPLIDMVFILLIFFMVSTTFVKDM LD+DRP AS+A +STKAIR+YI+ SG+ YLDG+PV+ WVIQSRL+D L+ ST SVLV+TD VP+ KLVEVVDQARLAGA+DVGVAT +EAG
Sbjct: 2 RYRERK-ESIQDINISPLIDMVFILLIFFMVSTTFVKDMKLDLDRPAASSAVTASTKAIRLYIDSSGEAYLDGEPVRIWVIQSRLRDQLKTSTAKSVLVITDDGVPAGKLVEVVDQARLAGATDVGVATVEEAG 134
BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A372BU25_9GAMM (Biopolymer transporter ExbD n=4 Tax=Proteobacteria TaxID=1224 RepID=A0A372BU25_9GAMM) HSP 1 Score: 185 bits (469), Expect = 6.180e-58 Identity = 92/134 (68.66%), Postives = 117/134 (87.31%), Query Frame = 1 Query: 1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
++R+R EQ +DISPLIDMVFILLIFFMVSTTFVKDM LD++RP A+++E +STKAIR+YI+ SG+T+LDGQP++TWVIQS+L+D+L+ + SVLVVTD NVP+ KLVEVVDQAR +GA+DVGVAT +EAG
Sbjct: 2 RFRERANTEQ-AVDISPLIDMVFILLIFFMVSTTFVKDMKLDLERPSATSSEQASTKAIRLYIDNSGETWLDGQPIRTWVIQSKLRDMLQGAASQSVLVVTDSNVPASKLVEVVDQARRSGAADVGVATVEEAG 134
BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A0K0XX34_9GAMM (Biopolymer transporter ExbD n=1 Tax=Wenzhouxiangella marina TaxID=1579979 RepID=A0A0K0XX34_9GAMM) HSP 1 Score: 185 bits (469), Expect = 6.180e-58 Identity = 94/134 (70.15%), Postives = 115/134 (85.82%), Query Frame = 1 Query: 1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
++R+R +QQ +DISPLIDMVFILLIFFMVSTTFVKDM LD++RP A +A +STKA+R+YI+ +G TYLDGQP+Q WVIQSRL++LL S SVLVVTDGNVP+++LVEVVDQAR AGA+DVGVAT +EAG
Sbjct: 2 RFRERTDTQQQ-VDISPLIDMVFILLIFFMVSTTFVKDMKLDLNRPSAESATTASTKAVRLYIDNTGATYLDGQPIQVWVIQSRLRELLSGSAEQSVLVVTDGNVPAERLVEVVDQARRAGAADVGVATVEEAG 134
BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A2E6REK7_9GAMM (Biopolymer transporter ExbD n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E6REK7_9GAMM) HSP 1 Score: 184 bits (468), Expect = 8.780e-58 Identity = 96/134 (71.64%), Postives = 111/134 (82.84%), Query Frame = 1 Query: 1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
++R+R EQ G+DISPLIDMVFILLIFFMVSTTFVKDM LD++RP ASTA +STKAIR+YI+ +G YLDGQPV+ WVIQSR++DLL S GSVLVVTD VP+ +LVEVVDQAR AGA DVGVAT EAG
Sbjct: 2 RFRERTHHEQ-GVDISPLIDMVFILLIFFMVSTTFVKDMKLDLNRPSASTASAASTKAIRLYIDNAGDVYLDGQPVRVWVIQSRVRDLLASSASGSVLVVTDDQVPAGRLVEVVDQARRAGAQDVGVATVDEAG 134
BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A2I2A7N6_9GAMM (Biopolymer transporter ExbD n=2 Tax=Hydrogenovibrio sp. SC-1 TaxID=2065820 RepID=A0A2I2A7N6_9GAMM) HSP 1 Score: 184 bits (467), Expect = 1.170e-57 Identity = 90/134 (67.16%), Postives = 114/134 (85.07%), Query Frame = 1 Query: 1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
+Y++R+ ++Q ID+SPLIDMVFILLIFFMVS TFVKDMDL+I+RPKA+++ PSSTKA+R+YI+ +G TYLD QPV+TWVIQS+L+D+L ST +VLVVTD VP++KL+EVVDQ RLAGA DVGV T E G
Sbjct: 2 RYKKRQSQDQ-SIDMSPLIDMVFILLIFFMVSATFVKDMDLEINRPKATSSSPSSTKAVRVYIDTNGDTYLDNQPVRTWVIQSKLRDMLRTSTESAVLVVTDEGVPARKLIEVVDQCRLAGAEDVGVVTEYEGG 134
BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A5N0T460_9GAMM (Biopolymer transporter ExbD n=1 Tax=Wenzhouxiangella sp. W260 TaxID=2613842 RepID=A0A5N0T460_9GAMM) HSP 1 Score: 181 bits (458), Expect = 2.930e-56 Identity = 94/134 (70.15%), Postives = 114/134 (85.07%), Query Frame = 1 Query: 1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
+YR+R+ + I+ISPLIDMVFILLIFFMVSTTFVKDM LD++RP ASTA +STKAIR+YI+ +G YLDG+PV+ WVIQSR++DLL STG SVLV+TD VP+ +LVEVVDQARLAGA+DVGVAT +EAG
Sbjct: 2 RYRERK-DTVDDINISPLIDMVFILLIFFMVSTTFVKDMKLDLNRPAASTATTASTKAIRLYIDNAGDIYLDGEPVRVWVIQSRIRDLLAGSTGKSVLVITDDGVPAGRLVEVVDQARLAGATDVGVATVEEAG 134
BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Match: A0A0X3TBJ1_9GAMM (Biopolymer transporter ExbD n=2 Tax=Thiomicrospira sp. WB1 TaxID=1685380 RepID=A0A0X3TBJ1_9GAMM) HSP 1 Score: 180 bits (457), Expect = 3.900e-56 Identity = 90/134 (67.16%), Postives = 112/134 (83.58%), Query Frame = 1 Query: 1 KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTAEPSSTKAIRIYIEGSGQTYLDGQPVQTWVIQSRLKDLLEVSTGGSVLVVTDGNVPSQKLVEVVDQARLAGASDVGVATRQEAG 402
+YR+R +E IDISPLIDMVFILLIFFMVS TFVKDMDL+I+RPKAS++ PSST+A+R+YI+ SG TYLD +P++ W+IQS+L+D+L ST +VLVVTD +VPS+KL+EVVDQ RLAGA DVGV T E G
Sbjct: 2 RYRKRT-QEDNNIDISPLIDMVFILLIFFMVSATFVKDMDLEINRPKASSSTPSSTQALRVYIDQSGDTYLDEKPIRVWMIQSKLRDMLRTSTDSTVLVVTDESVPSRKLIEVVDQCRLAGAEDVGVVTEAEGG 134 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10168.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10168.1.1 >prot_C-australica_Contig_10168.1.1 ID=prot_C-australica_Contig_10168.1.1|Name=mRNA_C-australica_Contig_10168.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=138bp KYRQREGEEQQGIDISPLIDMVFILLIFFMVSTTFVKDMDLDIDRPKASTback to top mRNA from alignment at C-australica_Contig_10168:1..414+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10168.1.1 ID=mRNA_C-australica_Contig_10168.1.1|Name=mRNA_C-australica_Contig_10168.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=414bp|location=Sequence derived from alignment at C-australica_Contig_10168:1..414+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10168:1..414+ >mRNA_C-australica_Contig_10168.1.1 ID=mRNA_C-australica_Contig_10168.1.1|Name=mRNA_C-australica_Contig_10168.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=414bp|location=Sequence derived from alignment at C-australica_Contig_10168:1..414+ (Chrysoparadoxa australica CS_1217)back to top |