Homology
BLAST of mRNA_C-australica_Contig_1014.1.3 vs. uniprot
Match: A0A836CJS7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJS7_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 5.530e-19 Identity = 89/259 (34.36%), Postives = 131/259 (50.58%), Query Frame = 2 Query: 128 ADVADAEKRGYQQRINERQEELRQIAAGTHGDLRREVGLLMRLRDRKIQAARAYHERSVKNRRELAEFEKVNAQATYEAELEEVKESLQDVIEQEVKRVGDMMEEAKKEMEMNDLSAAA--------ERKRAEKRHREPRHMASDGPK-RGKPKLCPDGMVGKAAAIKLLLPNPSLSEEEIRKDLCAIVQDWRERAVQYLRLVDH---TIVVTAEDDTLEYTGEEGTMLFRIGDRVTVISRVTEEEFNGTITNIAAEEV 868
A A E Q I+ + + +I AGTH ++ ++ L L+ R+ + ARA++E+ ++N RELA+FE+ A AT E L KE+L D I QE++R EEA+K + S KRA++ H + DG RG P + LP L++ E+R D AI+ DWRERA++YL+LV V A D + L ++GDRV+V SRVT+EEF G +T + +EV
Sbjct: 24 ASTARPEDESLQGEIDANYQAIEEINAGTHVEVVEKIKALQGLKRRREEVARAHNEKLLQNARELADFERRAAHATLETALATAKEALLDTIAQEIRRCE---EEARKTFSRAEDSRPPLPPPPLHPVNKRAKRPHSKKGGAGRDGGGGRGLGSRRP-------VTPSVCLP---LTDYEMRCDFAAIMADWRERAMEYLKLVGDGQWAHVDAARDSKGQPAVRVDGSLLKVGDRVSVWSRVTDEEFRGELTAVVGDEV 269
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1271 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-10_001020.1 |
| Cds size | 849 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682586748.4633152-UTR-C-australica_Contig_1014:319..659 | 1682586748.4633152-UTR-C-australica_Contig_1014:319..659 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_1014 320..659 - |
| 1682586748.5069346-UTR-C-australica_Contig_1014:1894..1976 | 1682586748.5069346-UTR-C-australica_Contig_1014:1894..1976 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_1014 1895..1976 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682586748.4723763-CDS-C-australica_Contig_1014:659..920 | 1682586748.4723763-CDS-C-australica_Contig_1014:659..920 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1014 660..920 - |
| 1682586748.481051-CDS-C-australica_Contig_1014:1007..1155 | 1682586748.481051-CDS-C-australica_Contig_1014:1007..1155 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1014 1008..1155 - |
| 1682586748.4899821-CDS-C-australica_Contig_1014:1283..1649 | 1682586748.4899821-CDS-C-australica_Contig_1014:1283..1649 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1014 1284..1649 - |
| 1682586748.4988146-CDS-C-australica_Contig_1014:1820..1894 | 1682586748.4988146-CDS-C-australica_Contig_1014:1820..1894 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1014 1821..1894 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1014.1.3 >prot_C-australica_Contig_1014.1.3 ID=prot_C-australica_Contig_1014.1.3|Name=mRNA_C-australica_Contig_1014.1.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=283bp
MDGEWEGDKPHKEQRADVADAEKRGYQQRINERQEELRQIAAGTHGDLRR
EVGLLMRLRDRKIQAARAYHERSVKNRRELAEFEKVNAQATYEAELEEVK
ESLQDVIEQEVKRVGDMMEEAKKEMEMNDLSAAAERKRAEKRHREPRHMA
SDGPKRGKPKLCPDGMVGKAAAIKLLLPNPSLSEEEIRKDLCAIVQDWRE
RAVQYLRLVDHTIVVTAEDDTLEYTGEEGTMLFRIGDRVTVISRVTEEEF
NGTITNIAAEEVGCFEIISPSVAYALVSHSFC* back to topmRNA from alignment at C-australica_Contig_1014:320..1976- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-australica_Contig_1014.1.3 ID=mRNA_C-australica_Contig_1014.1.3|Name=mRNA_C-australica_Contig_1014.1.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1657bp|location=Sequence derived from alignment at C-australica_Contig_1014:320..1976- (Chrysoparadoxa australica CS_1217)
CGCCTGTCCCATCTCTCTTCCTCTCTTGTCACTCCTCCTTCTGTCGCCCT
CTCAGCCTCTCAGGCTACCCCCCGCCAGGGGAATGGATGGAGAATGGGAA
GGCGATAAGCCTCACAAGGAGCAGAGGGCAGATGTTGCTGATGCAGAGAA
GCGAGGGTGCTGCCTCCCTATAACCCTACCCTAACCCCACCCTATCCCAC
CACCCCCTCATCGCAATGTCCCAATCTACCTCCAATCTGCCTCCAATCTG
CCTCCAGTCCCTGCGCTACTGACCCGAACCTAACCTAACTCTTTTTAGCC
CTCTCATACATACTTAATACCACTCAGGTACCAGCAGCGCATCAACGAGC
GACAGGAGGAGCTGAGACAGATTGCGGCGGGCACACATGGAGACTTGCGG
CGCGAAGTCGGATTGCTCATGAGGCTGAGGGACCGCAAGATCCAAGCTGC
AAGGGCCTACCATGAAAGATCCGTCAAGAATAGGAGAGAGCTGGCGGAAT
TTGAGAAGGTGAATGCCCAAGCAACATATGAGGCTGAGCTTGAGGAGGTG
AAGGAGTCGCTGCAGGATGTGATTGAGCAGGAAGTGAAACGGGTGGGCGA
CATGATGGAGGAGGCAAAGAAGGAGATGGAAATGAATGATTTGTCTGCTG
CGGCGGAAAGAAAACGAGCTGAAAAGAGACATAGGGAGCCTAGGTATGAG
ATGCTGGCCTCACCTGAGCATTCCTGAGTCTGCACAGCAATGCGCTCATT
TTTTAAGGCTCATCATTTGAACCCTGAAGCGTGCAGAGCTGAGCCCTTTT
GTGACCTTGGCCCCTCCACAGGCACATGGCAAGCGATGGCCCCAAGAGGG
GCAAGCCTAAGCTATGTCCTGATGGCATGGTGGGCAAGGCTGCAGCCATA
AAGCTGCTGCTACCGAACCCATCCCTATCGGAGGAGGAAATACGGAAGGA
CCTATGTGCCATTGTGCAGGTGAAGCAAGCCACCATAACAAGAGCTGACC
TCATCTCTTTACTCTCTTCCCTCTCTTGAGTTGCTAAGTTCATCTTCTTT
CTGCAGGACTGGCGGGAGAGAGCTGTGCAATATTTACGACTCGTTGACCA
CACCATTGTGGTGACTGCAGAGGACGATACCCTGGAGTATACTGGTGAGG
AAGGGACCATGTTGTTCCGGATTGGAGACCGGGTCACAGTTATCTCGAGG
GTGACCGAAGAGGAATTCAATGGCACCATTACCAACATTGCAGCAGAGGA
GGTTGGATGCTTTGAAATCATATCCCCTTCCGTTGCATATGCTCTCGTTT
CTCACTCATTTTGCTAATTATTAGCTTGCTTGCCCTAATCCTACTACAGA
AGGACTGTCAGGAGGTTTCTGCCTTCTGAGCCAATTCAGTTTTCTCTTTC
ACTGACGCTGATGCTGACACTGCCTGCTGCCAGGTTCACCTCCGCTTAGT
TGGTGGCCTCAAGGCATGTATGTACTTAGAGCACTTGAGGTACGTTGGTA
CCGCTTGCAAGTGTGACATGACGAAGTGTTTTCTCCGTGTCATGCAATCA
TTCATCCCCCCTTCTCACTCTTCATTCACTCTTGTGCCTCAACAGGCAGG
GGAGGTTGACCATGGTAAGGGACCAAAACCGGTGGATGTGAGGAAGCCTC
AAGTCCC back to topCoding sequence (CDS) from alignment at C-australica_Contig_1014:320..1976- >mRNA_C-australica_Contig_1014.1.3 ID=mRNA_C-australica_Contig_1014.1.3|Name=mRNA_C-australica_Contig_1014.1.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=849bp|location=Sequence derived from alignment at C-australica_Contig_1014:320..1976- (Chrysoparadoxa australica CS_1217)
ATGGATGGAGAATGGGAAGGCGATAAGCCTCACAAGGAGCAGAGGGCAGA
TGTTGCTGATGCAGAGAAGCGAGGGTACCAGCAGCGCATCAACGAGCGAC
AGGAGGAGCTGAGACAGATTGCGGCGGGCACACATGGAGACTTGCGGCGC
GAAGTCGGATTGCTCATGAGGCTGAGGGACCGCAAGATCCAAGCTGCAAG
GGCCTACCATGAAAGATCCGTCAAGAATAGGAGAGAGCTGGCGGAATTTG
AGAAGGTGAATGCCCAAGCAACATATGAGGCTGAGCTTGAGGAGGTGAAG
GAGTCGCTGCAGGATGTGATTGAGCAGGAAGTGAAACGGGTGGGCGACAT
GATGGAGGAGGCAAAGAAGGAGATGGAAATGAATGATTTGTCTGCTGCGG
CGGAAAGAAAACGAGCTGAAAAGAGACATAGGGAGCCTAGGCACATGGCA
AGCGATGGCCCCAAGAGGGGCAAGCCTAAGCTATGTCCTGATGGCATGGT
GGGCAAGGCTGCAGCCATAAAGCTGCTGCTACCGAACCCATCCCTATCGG
AGGAGGAAATACGGAAGGACCTATGTGCCATTGTGCAGGACTGGCGGGAG
AGAGCTGTGCAATATTTACGACTCGTTGACCACACCATTGTGGTGACTGC
AGAGGACGATACCCTGGAGTATACTGGTGAGGAAGGGACCATGTTGTTCC
GGATTGGAGACCGGGTCACAGTTATCTCGAGGGTGACCGAAGAGGAATTC
AATGGCACCATTACCAACATTGCAGCAGAGGAGGTTGGATGCTTTGAAAT
CATATCCCCTTCCGTTGCATATGCTCTCGTTTCTCACTCATTTTGCTAA back to top
|