mRNA_C-australica_Contig_1014.1.3 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1014.1.3
Unique NamemRNA_C-australica_Contig_1014.1.3
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_1014.1.3 vs. uniprot
Match: A0A836CJS7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJS7_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 5.530e-19
Identity = 89/259 (34.36%), Postives = 131/259 (50.58%), Query Frame = 2 
Query:  128 ADVADAEKRGYQQRINERQEELRQIAAGTHGDLRREVGLLMRLRDRKIQAARAYHERSVKNRRELAEFEKVNAQATYEAELEEVKESLQDVIEQEVKRVGDMMEEAKKEMEMNDLSAAA--------ERKRAEKRHREPRHMASDGPK-RGKPKLCPDGMVGKAAAIKLLLPNPSLSEEEIRKDLCAIVQDWRERAVQYLRLVDH---TIVVTAEDDTLEYTGEEGTMLFRIGDRVTVISRVTEEEFNGTITNIAAEEV 868
            A  A  E    Q  I+   + + +I AGTH ++  ++  L  L+ R+ + ARA++E+ ++N RELA+FE+  A AT E  L   KE+L D I QE++R     EEA+K     + S             KRA++ H +      DG   RG     P           + LP   L++ E+R D  AI+ DWRERA++YL+LV       V  A D   +        L ++GDRV+V SRVT+EEF G +T +  +EV
Sbjct:   24 ASTARPEDESLQGEIDANYQAIEEINAGTHVEVVEKIKALQGLKRRREEVARAHNEKLLQNARELADFERRAAHATLETALATAKEALLDTIAQEIRRCE---EEARKTFSRAEDSRPPLPPPPLHPVNKRAKRPHSKKGGAGRDGGGGRGLGSRRP-------VTPSVCLP---LTDYEMRCDFAAIMADWRERAMEYLKLVGDGQWAHVDAARDSKGQPAVRVDGSLLKVGDRVSVWSRVTDEEFRGELTAVVGDEV 269
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1014.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CJS7_9STRA5.530e-1934.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1014contigC-australica_Contig_1014:320..1976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1271
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_001020.1
Cds size849
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1014.1.3prot_C-australica_Contig_1014.1.3Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1014 660..1894 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586748.4633152-UTR-C-australica_Contig_1014:319..6591682586748.4633152-UTR-C-australica_Contig_1014:319..659Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1014 320..659 -
1682586748.5069346-UTR-C-australica_Contig_1014:1894..19761682586748.5069346-UTR-C-australica_Contig_1014:1894..1976Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1014 1895..1976 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586748.4723763-CDS-C-australica_Contig_1014:659..9201682586748.4723763-CDS-C-australica_Contig_1014:659..920Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 660..920 -
1682586748.481051-CDS-C-australica_Contig_1014:1007..11551682586748.481051-CDS-C-australica_Contig_1014:1007..1155Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 1008..1155 -
1682586748.4899821-CDS-C-australica_Contig_1014:1283..16491682586748.4899821-CDS-C-australica_Contig_1014:1283..1649Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 1284..1649 -
1682586748.4988146-CDS-C-australica_Contig_1014:1820..18941682586748.4988146-CDS-C-australica_Contig_1014:1820..1894Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 1821..1894 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1014.1.3

>prot_C-australica_Contig_1014.1.3 ID=prot_C-australica_Contig_1014.1.3|Name=mRNA_C-australica_Contig_1014.1.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=283bp
MDGEWEGDKPHKEQRADVADAEKRGYQQRINERQEELRQIAAGTHGDLRR
EVGLLMRLRDRKIQAARAYHERSVKNRRELAEFEKVNAQATYEAELEEVK
ESLQDVIEQEVKRVGDMMEEAKKEMEMNDLSAAAERKRAEKRHREPRHMA
SDGPKRGKPKLCPDGMVGKAAAIKLLLPNPSLSEEEIRKDLCAIVQDWRE
RAVQYLRLVDHTIVVTAEDDTLEYTGEEGTMLFRIGDRVTVISRVTEEEF
NGTITNIAAEEVGCFEIISPSVAYALVSHSFC*
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mRNA from alignment at C-australica_Contig_1014:320..1976-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1014.1.3 ID=mRNA_C-australica_Contig_1014.1.3|Name=mRNA_C-australica_Contig_1014.1.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1657bp|location=Sequence derived from alignment at C-australica_Contig_1014:320..1976- (Chrysoparadoxa australica CS_1217)
CGCCTGTCCCATCTCTCTTCCTCTCTTGTCACTCCTCCTTCTGTCGCCCT
CTCAGCCTCTCAGGCTACCCCCCGCCAGGGGAATGGATGGAGAATGGGAA
GGCGATAAGCCTCACAAGGAGCAGAGGGCAGATGTTGCTGATGCAGAGAA
GCGAGGGTGCTGCCTCCCTATAACCCTACCCTAACCCCACCCTATCCCAC
CACCCCCTCATCGCAATGTCCCAATCTACCTCCAATCTGCCTCCAATCTG
CCTCCAGTCCCTGCGCTACTGACCCGAACCTAACCTAACTCTTTTTAGCC
CTCTCATACATACTTAATACCACTCAGGTACCAGCAGCGCATCAACGAGC
GACAGGAGGAGCTGAGACAGATTGCGGCGGGCACACATGGAGACTTGCGG
CGCGAAGTCGGATTGCTCATGAGGCTGAGGGACCGCAAGATCCAAGCTGC
AAGGGCCTACCATGAAAGATCCGTCAAGAATAGGAGAGAGCTGGCGGAAT
TTGAGAAGGTGAATGCCCAAGCAACATATGAGGCTGAGCTTGAGGAGGTG
AAGGAGTCGCTGCAGGATGTGATTGAGCAGGAAGTGAAACGGGTGGGCGA
CATGATGGAGGAGGCAAAGAAGGAGATGGAAATGAATGATTTGTCTGCTG
CGGCGGAAAGAAAACGAGCTGAAAAGAGACATAGGGAGCCTAGGTATGAG
ATGCTGGCCTCACCTGAGCATTCCTGAGTCTGCACAGCAATGCGCTCATT
TTTTAAGGCTCATCATTTGAACCCTGAAGCGTGCAGAGCTGAGCCCTTTT
GTGACCTTGGCCCCTCCACAGGCACATGGCAAGCGATGGCCCCAAGAGGG
GCAAGCCTAAGCTATGTCCTGATGGCATGGTGGGCAAGGCTGCAGCCATA
AAGCTGCTGCTACCGAACCCATCCCTATCGGAGGAGGAAATACGGAAGGA
CCTATGTGCCATTGTGCAGGTGAAGCAAGCCACCATAACAAGAGCTGACC
TCATCTCTTTACTCTCTTCCCTCTCTTGAGTTGCTAAGTTCATCTTCTTT
CTGCAGGACTGGCGGGAGAGAGCTGTGCAATATTTACGACTCGTTGACCA
CACCATTGTGGTGACTGCAGAGGACGATACCCTGGAGTATACTGGTGAGG
AAGGGACCATGTTGTTCCGGATTGGAGACCGGGTCACAGTTATCTCGAGG
GTGACCGAAGAGGAATTCAATGGCACCATTACCAACATTGCAGCAGAGGA
GGTTGGATGCTTTGAAATCATATCCCCTTCCGTTGCATATGCTCTCGTTT
CTCACTCATTTTGCTAATTATTAGCTTGCTTGCCCTAATCCTACTACAGA
AGGACTGTCAGGAGGTTTCTGCCTTCTGAGCCAATTCAGTTTTCTCTTTC
ACTGACGCTGATGCTGACACTGCCTGCTGCCAGGTTCACCTCCGCTTAGT
TGGTGGCCTCAAGGCATGTATGTACTTAGAGCACTTGAGGTACGTTGGTA
CCGCTTGCAAGTGTGACATGACGAAGTGTTTTCTCCGTGTCATGCAATCA
TTCATCCCCCCTTCTCACTCTTCATTCACTCTTGTGCCTCAACAGGCAGG
GGAGGTTGACCATGGTAAGGGACCAAAACCGGTGGATGTGAGGAAGCCTC
AAGTCCC
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Coding sequence (CDS) from alignment at C-australica_Contig_1014:320..1976-

>mRNA_C-australica_Contig_1014.1.3 ID=mRNA_C-australica_Contig_1014.1.3|Name=mRNA_C-australica_Contig_1014.1.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=849bp|location=Sequence derived from alignment at C-australica_Contig_1014:320..1976- (Chrysoparadoxa australica CS_1217)
ATGGATGGAGAATGGGAAGGCGATAAGCCTCACAAGGAGCAGAGGGCAGA
TGTTGCTGATGCAGAGAAGCGAGGGTACCAGCAGCGCATCAACGAGCGAC
AGGAGGAGCTGAGACAGATTGCGGCGGGCACACATGGAGACTTGCGGCGC
GAAGTCGGATTGCTCATGAGGCTGAGGGACCGCAAGATCCAAGCTGCAAG
GGCCTACCATGAAAGATCCGTCAAGAATAGGAGAGAGCTGGCGGAATTTG
AGAAGGTGAATGCCCAAGCAACATATGAGGCTGAGCTTGAGGAGGTGAAG
GAGTCGCTGCAGGATGTGATTGAGCAGGAAGTGAAACGGGTGGGCGACAT
GATGGAGGAGGCAAAGAAGGAGATGGAAATGAATGATTTGTCTGCTGCGG
CGGAAAGAAAACGAGCTGAAAAGAGACATAGGGAGCCTAGGCACATGGCA
AGCGATGGCCCCAAGAGGGGCAAGCCTAAGCTATGTCCTGATGGCATGGT
GGGCAAGGCTGCAGCCATAAAGCTGCTGCTACCGAACCCATCCCTATCGG
AGGAGGAAATACGGAAGGACCTATGTGCCATTGTGCAGGACTGGCGGGAG
AGAGCTGTGCAATATTTACGACTCGTTGACCACACCATTGTGGTGACTGC
AGAGGACGATACCCTGGAGTATACTGGTGAGGAAGGGACCATGTTGTTCC
GGATTGGAGACCGGGTCACAGTTATCTCGAGGGTGACCGAAGAGGAATTC
AATGGCACCATTACCAACATTGCAGCAGAGGAGGTTGGATGCTTTGAAAT
CATATCCCCTTCCGTTGCATATGCTCTCGTTTCTCACTCATTTTGCTAA
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