prot_C-australica_Contig_1014.1.3 (polypeptide) Chrysoparadoxa australica CS_1217

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-australica_Contig_1014.1.3
Unique Name	prot_C-australica_Contig_1014.1.3
Type	polypeptide
Organism	Chrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Sequence length	283

Homology

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BLAST of mRNA_C-australica_Contig_1014.1.3 vs. uniprot
Match: A0A836CJS7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJS7_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 6.700e-20
Identity = 89/259 (34.36%), Postives = 131/259 (50.58%), Query Frame = 0

Query:   16 ADVADAEKRGYQQRINERQEELRQIAAGTHGDLRREVGLLMRLRDRKIQAARAYHERSVKNRRELAEFEKVNAQATYEAELEEVKESLQDVIEQEVKRVGDMMEEAKKEMEMNDLSAAA--------ERKRAEKRHREPRHMASDGPK-RGKPKLCPDGMVGKAAAIKLLLPNPSLSEEEIRKDLCAIVQDWRERAVQYLRLVDH---TIVVTAEDDTLEYTGEEGTMLFRIGDRVTVISRVTEEEFNGTITNIAAEEV 262
            A  A  E    Q  I+   + + +I AGTH ++  ++  L  L+ R+ + ARA++E+ ++N RELA+FE+  A AT E  L   KE+L D I QE++R     EEA+K     + S             KRA++ H +      DG   RG     P           + LP   L++ E+R D  AI+ DWRERA++YL+LV       V  A D   +        L ++GDRV+V SRVT+EEF G +T +  +EV
Sbjct:   24 ASTARPEDESLQGEIDANYQAIEEINAGTHVEVVEKIKALQGLKRRREEVARAHNEKLLQNARELADFERRAAHATLETALATAKEALLDTIAQEIRRCE---EEARKTFSRAEDSRPPLPPPPLHPVNKRAKRPHSKKGGAGRDGGGGRGLGSRRP-------VTPSVCLP---LTDYEMRCDFAAIMADWRERAMEYLKLVGDGQWAHVDAARDSKGQPAVRVDGSLLKVGDRVSVWSRVTDEEFRGELTAVVGDEV 269

The following BLAST results are available for this feature:

BLAST of mRNA_C-australica_Contig_1014.1.3 vs. uniprot

BLAST of mRNA_C-australica_Contig_1014.1.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1

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POSITION

0


Match Name	E-value	Identity	Description
A0A836CJS7_9STRA	6.700e-20	34.36	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

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POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 16..36
None	No IPR available	COILS	Coil	Coil	coord: 89..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..157
IPR013907	Sds3-like	SMART	SM01401	Sds3_2	coord: 14..193 e-value: 1.4E-5 score: 34.5
IPR013907	Sds3-like	PFAM	PF08598	Sds3	coord: 26..139 e-value: 4.1E-7 score: 30.2

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-australica_Contig_1014	contig	C-australica_Contig_1014:660..1894 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Chrysoparadoxa australica CS_1217 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-australica_Contig_1014.1.3	mRNA_C-australica_Contig_1014.1.3	Chrysoparadoxa australica CS_1217	mRNA	C-australica_Contig_1014 320..1976 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-australica_Contig_1014.1.3 ID=prot_C-australica_Contig_1014.1.3|Name=mRNA_C-australica_Contig_1014.1.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=283bp
MDGEWEGDKPHKEQRADVADAEKRGYQQRINERQEELRQIAAGTHGDLRR
EVGLLMRLRDRKIQAARAYHERSVKNRRELAEFEKVNAQATYEAELEEVK
ESLQDVIEQEVKRVGDMMEEAKKEMEMNDLSAAAERKRAEKRHREPRHMA
SDGPKRGKPKLCPDGMVGKAAAIKLLLPNPSLSEEEIRKDLCAIVQDWRE
RAVQYLRLVDHTIVVTAEDDTLEYTGEEGTMLFRIGDRVTVISRVTEEEF
NGTITNIAAEEVGCFEIISPSVAYALVSHSFC*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013907	Sds3