mRNA_C-tenellus_contig6723.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6723.1.1
Unique NamemRNA_C-tenellus_contig6723.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Match: D7FL11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL11_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.270e-35
Identity = 59/84 (70.24%), Postives = 72/84 (85.71%), Query Frame = 1
Query:   13 VRSWFPTMTMAMITAPTRGRPTKAAFRVPPKMTKWEVKEHLWKIYNVPVKNVTTQNFDGKRKRIAGKRRVISYKRPDYKKAIVT 264
            +RSWFP M MAMI+ P+R RP +A+F++ PKMTKWEVKE+L KIYNVPVK V TQNF+GKRKRI GKR ++ YKRP++KKAIVT
Sbjct:    3 IRSWFPNMVMAMISGPSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVMTQNFEGKRKRIMGKRSIVPYKRPNFKKAIVT 86          
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Match: A0A835YVT8_9STRA (Ribosomal protein L23/L15e core domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVT8_9STRA)

HSP 1 Score: 118 bits (296), Expect = 7.030e-33
Identity = 60/85 (70.59%), Postives = 69/85 (81.18%), Query Frame = 1
Query:   13 VRSWFPTMTMAMITAPTRGRPTKAAFRVPPKMTKWEVKEHLWKIYNVPVKNVTTQNFDGKRKRIAGKRRVISYKRPDYKKAIVTL 267
            V+ WFP+  M ++T PTRGRP +AAFRV PKMTK EVKE+L K+Y VPVK V TQNF GKRKRI G R +ISYKRPD+KKAIVTL
Sbjct:    3 VKEWFPSFFMQLVTMPTRGRPQQAAFRVSPKMTKLEVKEYLLKVYGVPVKKVMTQNFLGKRKRIQGSRSIISYKRPDFKKAIVTL 87          
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Match: A0A6U3SB59_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SB59_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.870e-21
Identity = 49/86 (56.98%), Postives = 59/86 (68.60%), Query Frame = 1
Query:   13 VRSWFPTMTMAMITA--PTRGRPTKAAFRVPPKMTKWEVKEHLWKIYNVPVKNVTTQNFDGKRKRIAGKRRVISYKRPDYKKAIVT 264
            +R W P M + +++A   T      A FRV PKMTK EVKEHL KIYN+PV  V TQN+ GKRKR+ GKRR+  YK  D+KKAIVT
Sbjct:   11 LRVWMPNMPIVLLSARNATETSAATATFRVLPKMTKHEVKEHLTKIYNLPVAKVNTQNYLGKRKRVVGKRRIAYYKNADFKKAIVT 96          
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Match: B8C4N9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4N9_THAPS)

HSP 1 Score: 87.0 bits (214), Expect = 5.190e-20
Identity = 46/87 (52.87%), Postives = 60/87 (68.97%), Query Frame = 1
Query:    7 QSVRSWFPTMTMAMITAP--TRGRPTKAAFRVPPKMTKWEVKEHLWKIYNVPVKNVTTQNFDGKRKRIAGKRRVISYKRPDYKKAIV 261
            Q  + W P++ + ++TA   T   P  A FR+ PKMTK EV+E+L KIY++PVK V TQN+ GKR RI GKR ++  KRPDYKKA V
Sbjct:   24 QGYKMWMPSLPLVLLTATHATPSNPATAQFRILPKMTKHEVREYLTKIYDLPVKEVRTQNYLGKRMRIIGKRHIVYAKRPDYKKAFV 110          
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Match: A0A4D9DHX4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DHX4_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 6.190e-19
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   40 MAMITAPTRGRPTKAAFRVPPKMTKWEVKEHLWKIYNVPVKNVTTQNFDGKRKRIAGKRRVISYKRPDYKKAIVTL 267
            MA+I APT+  P +A FRV P M K E++E+L KIY + V+ V T N  G+RKRI G RR++ YKRPD+KKA VTL
Sbjct:    1 MALIRAPTQATPYQAVFRVSPSMNKPEIREYLTKIYGLNVRKVMTANMAGRRKRIMGSRRILRYKRPDFKKAYVTL 76          
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Match: A0A7S0ABN5_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ABN5_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 7.660e-19
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = 1
Query:   16 RSWFPTMTMAMITA--PTRGRPTKAAFRVPPKMTKWEVKEHLWKIYNVPVKNVTTQNFDGKRKRIAGKRRVISYKRPDYKKAIVT 264
            R W PTM + ++ A   T     +A FRV P+MTK E+KEHL KIY++PVK V T N+ GKRKR+ G+R+V  YK  D+KKAIVT
Sbjct:   11 RQWMPTMPIVLVDAVNATERANAQATFRVLPRMTKHEIKEHLQKIYDLPVKKVHTMNYLGKRKRVYGERKVAYYKYRDFKKAIVT 95          
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Match: A0A7S2RP09_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RP09_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.270e-18
Identity = 46/85 (54.12%), Postives = 57/85 (67.06%), Query Frame = 1
Query:   16 RSWFPTMTMAMITA--PTRGRPTKAAFRVPPKMTKWEVKEHLWKIYNVPVKNVTTQNFDGKRKRIAGKRRVISYKRPDYKKAIVT 264
            R W PTM + +++A   T   P  A FRV PKMTK E+KE+L KIYN+PV  V T N+ GKRKR  GKR+ + YK  D+KKA VT
Sbjct:   11 RMWMPTMPITLVSARNATETAPAMATFRVLPKMTKHEIKEYLTKIYNLPVTQVDTINYMGKRKRAIGKRKSVYYKYRDFKKAHVT 95          
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Match: A0A1E7FSR6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSR6_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.990e-18
Identity = 44/89 (49.44%), Postives = 59/89 (66.29%), Query Frame = 1
Query:    4 AQSVRSWFPTMTMAMITAP--TRGRPTKAAFRVPPKMTKWEVKEHLWKIYNVPVKNVTTQNFDGKRKRIAGKRRVISYKRPDYKKAIVT 264
            A+  R W P M M M++A   T  +P +A FRV P+MTK E+KE+L KIY +PV+ V T N+ GKRK + G   VI YK  D+KKA+V+
Sbjct:    9 AKQFRMWMPNMPMLMVSAKNATARQPARATFRVLPRMTKHEIKEYLTKIYGLPVRQVNTSNYMGKRKIVRGSSAVIRYKYADFKKAVVS 97          
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Match: A0A1Z5JAC6_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JAC6_FISSO)

HSP 1 Score: 80.1 bits (196), Expect = 1.860e-17
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    7 QSVRSWFPTMTMAMITAP--TRGRPTKAAFRVPPKMTKWEVKEHLWKIYNVPVKNVTTQNFDGKRKRIAGKRRVISYKRPDYKKAIVT 264
            Q  R W PTM + +++A   T   P +A FR  P+MTK E+KE+L KIY +PVK V T N+ GKRKR+  + + + +K  D+KKA+VT
Sbjct:    8 QQFRMWMPTMPLTLVSAKNATPTHPARAVFRTLPRMTKHEIKEYLTKIYQLPVKQVNTMNYQGKRKRLLTQNKPVYFKYKDFKKAVVT 95          
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Match: A0A7S2W937_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W937_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.520e-14
Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    4 AQSVRSWFPTMTMAMITAPTRGRPTKAA---FRVPPKMTKWEVKEHLWKIYNVPVKNVTTQNFDGKRKRIAGKRRVISYK-RPDYKKAIVT 264
            A  V+ +FP M M +++    G  TKA    FRVPP MTK E+KE+L KIY++PV  V T NFDG+ KR  GK R + YK +  +K+A VT
Sbjct:   28 AMGVKEFFPNMFMTLLSVRNAGSKTKAPLAIFRVPPAMTKLEIKEYLTKIYSLPVARVNTVNFDGRWKRHYGKTRSVPYKSQKKHKRAYVT 118          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7FL11_ECTSI1.270e-3570.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YVT8_9STRA7.030e-3370.59Ribosomal protein L23/L15e core domain-containing ... [more]
A0A6U3SB59_9STRA3.870e-2156.98Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
B8C4N9_THAPS5.190e-2052.87Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A4D9DHX4_9STRA6.190e-1956.58Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S0ABN5_9STRA7.660e-1954.12Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2RP09_9STRA4.270e-1854.12Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1E7FSR6_9STRA4.990e-1849.44Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A1Z5JAC6_FISSO1.860e-1746.59Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S2W937_9STRA1.520e-1448.35Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6723contigC-tenellus_contig6723:2390..3357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FL11
PFAMsRibosomal_L23
Model size267
Max annot lvl2759|Eukaryota
KEGG koko:K02892
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.09e-36
EggNOG OGs2CJ9U@1|root,2S3T6@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L25/L23
Ec32 orthologEc-21_002040.1
DescriptionRibosomal protein L23
Cds size267
COG categoryS
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789987.6731536-CDS-C-tenellus_contig6723:2389..24911680789987.6731536-CDS-C-tenellus_contig6723:2389..2491Choristocarpus tenellus KU2346CDSC-tenellus_contig6723 2390..2491 -
1680789987.6844177-CDS-C-tenellus_contig6723:2810..29201680789987.6844177-CDS-C-tenellus_contig6723:2810..2920Choristocarpus tenellus KU2346CDSC-tenellus_contig6723 2811..2920 -
1680789987.6933496-CDS-C-tenellus_contig6723:3302..33571680789987.6933496-CDS-C-tenellus_contig6723:3302..3357Choristocarpus tenellus KU2346CDSC-tenellus_contig6723 3303..3357 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6723.1.1prot_C-tenellus_contig6723.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6723 2390..3357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6723.1.1

>prot_C-tenellus_contig6723.1.1 ID=prot_C-tenellus_contig6723.1.1|Name=mRNA_C-tenellus_contig6723.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=89bp
MAQSVRSWFPTMTMAMITAPTRGRPTKAAFRVPPKMTKWEVKEHLWKIYN
VPVKNVTTQNFDGKRKRIAGKRRVISYKRPDYKKAIVTL
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mRNA from alignment at C-tenellus_contig6723:2390..3357-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6723.1.1 ID=mRNA_C-tenellus_contig6723.1.1|Name=mRNA_C-tenellus_contig6723.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=968bp|location=Sequence derived from alignment at C-tenellus_contig6723:2390..3357- (Choristocarpus tenellus KU2346)
ATGGCCCAAAGTGTTCGGTCGTGGTTTCCCACTATGACCATGGCAATGAT TACTGGTGAGTTGATCTAGGGTTGATTTTCATTGCATACTTATGGTAGAG GTATTGTTCTTTAGGAGGGAGGAGCTTATTGGTTGATTGTTGAGGTTTGT GGTTGACTGGCAACTCCGACCTATAGTGGCTATATGATCTTCGACAATCG CACCTCCAATAAGTTTGAACTGACTCTCATTACATGGGGTCTCTTGGTCT CCGTGGTGTGCTCTTGATGAAGTTGCAACGACCCTAAGAGCCCTGACTTG TTGGTGTGGTCATATCGCGTTTAACAGAACGTCGCTTGTGTTGGAATGTG GAATTATCTCGAGACCTCGTGGGACCCATGCCTTCTCTACCTTTCAAGCC CCTCAGTACGGCTTTATATCCTTGTTTACTACCGTAGCTCCGACCAGAGG TCGGCCCACGAAGGCAGCGTTCAGGGTACCACCGAAGATGACGAAGTGGG AGGTGAAGGAGCACTTGTGGAAGATCTACAACGTGCCTGTCAAGAATGTG AGAGCTTCCTTTTGGTTAATGAGTGGATAAACAAGTCATGCAATACCGGT TGGGGGCGATGGGGTCTGGAGATGATAGATAACCAAACGGACATTTCAGA GAATGTGAGCTCAAGTCTCGGCTTCTATGTAGCAGTAGTTCACCGGAAAT CGGTGAAGGTAATCTTTGTGCATTACGCTTCAAAGTACCTCGAGTAGATG CTGCGCACTCTTCCTCTCTTTCCATTGCTCACAATGTTCTTACATACCCT ACTATTCCTGTGAACCATTGCATTTGCACTACTAATGTGGTGGTGAATTG CTTGCTTACCTCCAAGGTTACCACACAGAACTTTGATGGCAAGCGAAAGA GGATAGCAGGGAAGCGGAGGGTCATCTCGTATAAGCGACCAGATTACAAA AAGGCCATCGTAACCTTG
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Coding sequence (CDS) from alignment at C-tenellus_contig6723:2390..3357-

>mRNA_C-tenellus_contig6723.1.1 ID=mRNA_C-tenellus_contig6723.1.1|Name=mRNA_C-tenellus_contig6723.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=267bp|location=Sequence derived from alignment at C-tenellus_contig6723:2390..3357- (Choristocarpus tenellus KU2346)
ATGGCCCAAAGTGTTCGGTCGTGGTTTCCCACTATGACCATGGCAATGAT
TACTGCTCCGACCAGAGGTCGGCCCACGAAGGCAGCGTTCAGGGTACCAC
CGAAGATGACGAAGTGGGAGGTGAAGGAGCACTTGTGGAAGATCTACAAC
GTGCCTGTCAAGAATGTTACCACACAGAACTTTGATGGCAAGCGAAAGAG
GATAGCAGGGAAGCGGAGGGTCATCTCGTATAAGCGACCAGATTACAAAA
AGGCCATCGTAACCTTG
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