mRNA_C-tenellus_contig6723.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Match: D7FL11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL11_ECTSI) HSP 1 Score: 125 bits (314), Expect = 1.270e-35 Identity = 59/84 (70.24%), Postives = 72/84 (85.71%), Query Frame = 1 Query: 13 VRSWFPTMTMAMITAPTRGRPTKAAFRVPPKMTKWEVKEHLWKIYNVPVKNVTTQNFDGKRKRIAGKRRVISYKRPDYKKAIVT 264 +RSWFP M MAMI+ P+R RP +A+F++ PKMTKWEVKE+L KIYNVPVK V TQNF+GKRKRI GKR ++ YKRP++KKAIVT Sbjct: 3 IRSWFPNMVMAMISGPSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVMTQNFEGKRKRIMGKRSIVPYKRPNFKKAIVT 86
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Match: A0A835YVT8_9STRA (Ribosomal protein L23/L15e core domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVT8_9STRA) HSP 1 Score: 118 bits (296), Expect = 7.030e-33 Identity = 60/85 (70.59%), Postives = 69/85 (81.18%), Query Frame = 1 Query: 13 VRSWFPTMTMAMITAPTRGRPTKAAFRVPPKMTKWEVKEHLWKIYNVPVKNVTTQNFDGKRKRIAGKRRVISYKRPDYKKAIVTL 267 V+ WFP+ M ++T PTRGRP +AAFRV PKMTK EVKE+L K+Y VPVK V TQNF GKRKRI G R +ISYKRPD+KKAIVTL Sbjct: 3 VKEWFPSFFMQLVTMPTRGRPQQAAFRVSPKMTKLEVKEYLLKVYGVPVKKVMTQNFLGKRKRIQGSRSIISYKRPDFKKAIVTL 87
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Match: A0A6U3SB59_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SB59_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 3.870e-21 Identity = 49/86 (56.98%), Postives = 59/86 (68.60%), Query Frame = 1 Query: 13 VRSWFPTMTMAMITA--PTRGRPTKAAFRVPPKMTKWEVKEHLWKIYNVPVKNVTTQNFDGKRKRIAGKRRVISYKRPDYKKAIVT 264 +R W P M + +++A T A FRV PKMTK EVKEHL KIYN+PV V TQN+ GKRKR+ GKRR+ YK D+KKAIVT Sbjct: 11 LRVWMPNMPIVLLSARNATETSAATATFRVLPKMTKHEVKEHLTKIYNLPVAKVNTQNYLGKRKRVVGKRRIAYYKNADFKKAIVT 96
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Match: B8C4N9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4N9_THAPS) HSP 1 Score: 87.0 bits (214), Expect = 5.190e-20 Identity = 46/87 (52.87%), Postives = 60/87 (68.97%), Query Frame = 1 Query: 7 QSVRSWFPTMTMAMITAP--TRGRPTKAAFRVPPKMTKWEVKEHLWKIYNVPVKNVTTQNFDGKRKRIAGKRRVISYKRPDYKKAIV 261 Q + W P++ + ++TA T P A FR+ PKMTK EV+E+L KIY++PVK V TQN+ GKR RI GKR ++ KRPDYKKA V Sbjct: 24 QGYKMWMPSLPLVLLTATHATPSNPATAQFRILPKMTKHEVREYLTKIYDLPVKEVRTQNYLGKRMRIIGKRHIVYAKRPDYKKAFV 110
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Match: A0A4D9DHX4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DHX4_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 6.190e-19 Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 1 Query: 40 MAMITAPTRGRPTKAAFRVPPKMTKWEVKEHLWKIYNVPVKNVTTQNFDGKRKRIAGKRRVISYKRPDYKKAIVTL 267 MA+I APT+ P +A FRV P M K E++E+L KIY + V+ V T N G+RKRI G RR++ YKRPD+KKA VTL Sbjct: 1 MALIRAPTQATPYQAVFRVSPSMNKPEIREYLTKIYGLNVRKVMTANMAGRRKRIMGSRRILRYKRPDFKKAYVTL 76
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Match: A0A7S0ABN5_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ABN5_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 7.660e-19 Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = 1 Query: 16 RSWFPTMTMAMITA--PTRGRPTKAAFRVPPKMTKWEVKEHLWKIYNVPVKNVTTQNFDGKRKRIAGKRRVISYKRPDYKKAIVT 264 R W PTM + ++ A T +A FRV P+MTK E+KEHL KIY++PVK V T N+ GKRKR+ G+R+V YK D+KKAIVT Sbjct: 11 RQWMPTMPIVLVDAVNATERANAQATFRVLPRMTKHEIKEHLQKIYDLPVKKVHTMNYLGKRKRVYGERKVAYYKYRDFKKAIVT 95
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Match: A0A7S2RP09_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RP09_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 4.270e-18 Identity = 46/85 (54.12%), Postives = 57/85 (67.06%), Query Frame = 1 Query: 16 RSWFPTMTMAMITA--PTRGRPTKAAFRVPPKMTKWEVKEHLWKIYNVPVKNVTTQNFDGKRKRIAGKRRVISYKRPDYKKAIVT 264 R W PTM + +++A T P A FRV PKMTK E+KE+L KIYN+PV V T N+ GKRKR GKR+ + YK D+KKA VT Sbjct: 11 RMWMPTMPITLVSARNATETAPAMATFRVLPKMTKHEIKEYLTKIYNLPVTQVDTINYMGKRKRAIGKRKSVYYKYRDFKKAHVT 95
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Match: A0A1E7FSR6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSR6_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 4.990e-18 Identity = 44/89 (49.44%), Postives = 59/89 (66.29%), Query Frame = 1 Query: 4 AQSVRSWFPTMTMAMITAP--TRGRPTKAAFRVPPKMTKWEVKEHLWKIYNVPVKNVTTQNFDGKRKRIAGKRRVISYKRPDYKKAIVT 264 A+ R W P M M M++A T +P +A FRV P+MTK E+KE+L KIY +PV+ V T N+ GKRK + G VI YK D+KKA+V+ Sbjct: 9 AKQFRMWMPNMPMLMVSAKNATARQPARATFRVLPRMTKHEIKEYLTKIYGLPVRQVNTSNYMGKRKIVRGSSAVIRYKYADFKKAVVS 97
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Match: A0A1Z5JAC6_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JAC6_FISSO) HSP 1 Score: 80.1 bits (196), Expect = 1.860e-17 Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 1 Query: 7 QSVRSWFPTMTMAMITAP--TRGRPTKAAFRVPPKMTKWEVKEHLWKIYNVPVKNVTTQNFDGKRKRIAGKRRVISYKRPDYKKAIVT 264 Q R W PTM + +++A T P +A FR P+MTK E+KE+L KIY +PVK V T N+ GKRKR+ + + + +K D+KKA+VT Sbjct: 8 QQFRMWMPTMPLTLVSAKNATPTHPARAVFRTLPRMTKHEIKEYLTKIYQLPVKQVNTMNYQGKRKRLLTQNKPVYFKYKDFKKAVVT 95
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Match: A0A7S2W937_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W937_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 1.520e-14 Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 1 Query: 4 AQSVRSWFPTMTMAMITAPTRGRPTKAA---FRVPPKMTKWEVKEHLWKIYNVPVKNVTTQNFDGKRKRIAGKRRVISYK-RPDYKKAIVT 264 A V+ +FP M M +++ G TKA FRVPP MTK E+KE+L KIY++PV V T NFDG+ KR GK R + YK + +K+A VT Sbjct: 28 AMGVKEFFPNMFMTLLSVRNAGSKTKAPLAIFRVPPAMTKLEIKEYLTKIYSLPVARVNTVNFDGRWKRHYGKTRSVPYKSQKKHKRAYVT 118 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6723.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig6723.1.1 >prot_C-tenellus_contig6723.1.1 ID=prot_C-tenellus_contig6723.1.1|Name=mRNA_C-tenellus_contig6723.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=89bp MAQSVRSWFPTMTMAMITAPTRGRPTKAAFRVPPKMTKWEVKEHLWKIYNback to top mRNA from alignment at C-tenellus_contig6723:2390..3357- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig6723.1.1 ID=mRNA_C-tenellus_contig6723.1.1|Name=mRNA_C-tenellus_contig6723.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=968bp|location=Sequence derived from alignment at C-tenellus_contig6723:2390..3357- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig6723:2390..3357- >mRNA_C-tenellus_contig6723.1.1 ID=mRNA_C-tenellus_contig6723.1.1|Name=mRNA_C-tenellus_contig6723.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=267bp|location=Sequence derived from alignment at C-tenellus_contig6723:2390..3357- (Choristocarpus tenellus KU2346)back to top |