mRNA_C-tenellus_contig10793.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10793.1.1
Unique NamemRNA_C-tenellus_contig10793.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10793.1.1 vs. uniprot
Match: D8LLY7_ECTSI (FeS assembly protein SufD n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY7_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 7.820e-63
Identity = 134/286 (46.85%), Postives = 177/286 (61.89%), Query Frame = 2
Query:  254 ARTGWLGRSGTG-------------GAV---LAETSEPETTASE----VMSERRDPKEWFDWVRGQAPPRPEALAELSSAAEKKLEEIPLPNRKQEPFRYTELEKMFRTNFVAGGAGSLA--TGEAVSEFRSADSAGQQLVFVNGILNKELSDTSGLVGIEGLVATHLGGVSAEHMPQVQELLAHLPEVDADHRTRQGALPFASLNQACFSDVAVIMVEPGVEVEKPVQVLFVSDGSVGPSISHPRLLVSAGQGSKLRIRESFTGFGESHLTNALGRVIVHEGADV 1045
            AR+   GR G G             GAV   L ET +   + +E    V   RRDP+ WFD +R  A PRP++L ELS A E +L E+ LP RKQEP+RYT+LE ++RT+F +    + A  T  A+       S GQQ+VFVNG+ + ELSD S L G+EGLVA H+G +    + Q +E+L++LPE DAD RT QG+L FASLNQACF+D  VIMV  GV VEKP+QV+F S+G  GP++SHPRL+V AG  S + + +S+   G   L N   RV+V + A V
Sbjct:   63 ARSAQAGRQGDGVLSATGVATEDNQGAVAGSLLETQQKGVSNNEMKPFVRVPRRDPRMWFDAIREGAVPRPDSLVELSKAGEAELAELALPTRKQEPYRYTDLESLYRTDFTSAAPTTTAAETAAAIKPHLLEASQGQQMVFVNGVFSDELSDVSALGGVEGLVAGHIGAIEGAPLDQAKEMLSYLPEKDADFRTTQGSLAFASLNQACFADAGVIMVADGVTVEKPIQVIFFSEGEEGPTVSHPRLVVKAGADSHVTLTQSYLSRGGVCLANGFTRVLVGDRATV 348          
BLAST of mRNA_C-tenellus_contig10793.1.1 vs. uniprot
Match: A0A6H5JB34_9PHAE (SufBD_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB34_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 1.880e-59
Identity = 128/270 (47.41%), Postives = 172/270 (63.70%), Query Frame = 2
Query:  260 TGWLGRSGTGGAV--LAETSEPETTASE----VMSERRDPKEWFDWVRGQAPPRPEALAELSSAAEKKLEEIPLPNRKQEPFRYTELEKMFRTNFVAGGAGSLA--TGEAVSEFRSADSAGQQLVFVNGILNKELSDTSGLVGIEGLVATHLGGVSAEHMPQVQELLAHLPEVDADHRTRQGALPFASLNQACFSDVAVIMVEPGVEVEKPVQVLFVSDGSVGPSISHPRLLVSAGQGSKLRIRESFTGFGESHLTNALGRVIVHEGADV 1045
            TG +     G AV  L ET +   + +E    V   RRDP+ WFD +R  A PRP++L ELS A E +L E+ LP RKQEP+RYT+LE ++RT+F +    + A  T  A+       S GQQ+VFVNG+ + ELSD S L G+EGLVA H+G +    + Q +E+L++LPE DAD RT QG+L FASLNQACF+D  VI+V  GV VEKP+QV+F S+G   P++SHPRL+V AG  S + + +S+   G   L N   RV+V + A V
Sbjct:  241 TGVVTEDNQGAAVGSLLETQQKGVSNNEMNPFVRVPRRDPRVWFDAIREGAVPRPDSLVELSKAGEAELAELALPTRKQEPYRYTDLESLYRTDFKSAALTTAAAETAAAIKPHLLEASQGQQMVFVNGVFSDELSDVSALGGVEGLVAGHIGAIEGTPLDQAKEMLSYLPEKDADFRTTQGSLAFASLNQACFADAGVIIVADGVTVEKPIQVIFFSEGEEVPTVSHPRLVVKAGADSHMTLTQSYLSRGGVCLANGFTRVLVGDRATV 510          
BLAST of mRNA_C-tenellus_contig10793.1.1 vs. uniprot
Match: A0A836CQZ7_9STRA (SufBD_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQZ7_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.350e-44
Identity = 109/245 (44.49%), Postives = 154/245 (62.86%), Query Frame = 2
Query:  326 TASEVMSERRDPKEWFDWVRGQAPPRPEALAELSSAAEKKLEEIPLPNRKQEPFRYTELEKMFRTNFVAGGAGSLATGEAVSEFRSADSAGQQLVFVNGILNKELSDTSGLVGIEGL-VATHLGGVSAEHMPQVQELLAHLPEVDADHRTRQGALPFASLNQACFSDVAVIMVEPGVEVEKPVQVLFVS------DGSVGPSISHPRLLVSAGQGSKLRIRESFTGFGESHLTNALGRVIVHEGA 1039
            T   +  +R DP+ WF  ++ QA   P    EL+SA    L+E+ LP+RKQEP+RYT+LE +FR ++ A  AG   + E   ++ S  S GQQLVFVNG  N +LSDTS +   EG+ V + LG  + EH   V  +L HLPEV A+  T QG+LPFA+LNQACF+D A +++ P V VE+P+QVLFV+      +G  G +I HPRL + AG+GS   + +S+ G G+ +  N + R +V +GA
Sbjct:    3 TGVNLAPKRADPRTWFGALQQQAA-TPAPFRELASAGAATLDEVDLPHRKQEPYRYTDLEAIFRHSYDAT-AGLPVSQEFAQKYLSEASKGQQLVFVNGRFNAQLSDTSAVP--EGVYVGSALG--AGEHQAAVMGVLDHLPEVGANKNTCQGSLPFAALNQACFADAAAVVIPPNVTVEQPIQVLFVTHAPKENEGGEGGAICHPRLAIVAGEGSSALVMQSYVGEGD-YFANCVTRSVVGKGA 240          
BLAST of mRNA_C-tenellus_contig10793.1.1 vs. uniprot
Match: A0A7S2MCQ0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MCQ0_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.650e-27
Identity = 88/235 (37.45%), Postives = 134/235 (57.02%), Query Frame = 2
Query:  365 EWFDWVRGQAPPRP--EALAELSSAAEKKLEEIPLPNRKQEPFRYTELEKMFRTNFVAG-GAGSLATGEAVSEFRSADSAGQQLVFVNGILNKELSDTSGLVGIEGLVATHLGGVSA---EHMPQVQELLAHLPEVDA--DHRTRQGALPFASLNQACFSDVAVIMVEPGVEVEKPVQVLFVSDGSVGPSISHPRLLVSAGQGSKLRIRESFTGFGE--SHLTNALGRVIVHEGA 1039
            EWF+ V  ++   P  + L+      +  L  +  P RK EP+RYT+L  MF T++    G G ++  E +  +    SA  Q+VF++G+  + LSD S L  +       +GG+S+   + +P+V + L  +PE+D   D RT QG+  F SLNQAC SD A I V  GVEVE+P+QVLF+S  ++ PSISH +L+V    G+   + +S+ G G+  ++ TNAL  V +  GA
Sbjct:   65 EWFERVSRKSALSPVVDLLSNTRLKGKDALTRVETPRRKLEPWRYTDLTSMFGTDYCRPQGLGDVSR-ETIEPYLEK-SASVQMVFMDGVFCESLSDMSALGSLS------IGGLSSLTPDVLPKVLQALEKVPEMDPTPDRRTCQGSAAFGSLNQACLSDCAYIFVPEGVEVERPIQVLFMSSATLAPSISHTQLVVVVESGASASLLQSYAGVGDGDTYFTNALTTVELGAGA 291          
BLAST of mRNA_C-tenellus_contig10793.1.1 vs. uniprot
Match: A0A7S2W6I7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6I7_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.720e-24
Identity = 84/232 (36.21%), Postives = 126/232 (54.31%), Query Frame = 2
Query:  368 WFDWVRGQAPPR---PEALAELSSAAEKKLEEIPLPNRKQEPFRYTELEKMFRTNFVAGGAGSLATGEAVSEFRSADSAGQQLVFVNGILNKELSDTSGLVG--IEGLVATHLGGVSAEHMPQVQELLAHLPEVD-ADHRTRQGALPFASLNQACFSDVAVIMVEPGVEVEKPVQVLFVSDGSVGPS-ISHPRLLVSAGQGSKLRIRESF-TGFGESHLTNALGRVIVHEGA 1039
            WF+     A P    P  + E  S  +  L +  +P RKQE +R+  ++ MF          S  + +A++ +  A++AG   VFV+G+   ELSD   +    + G V++    +S  H+  + EL    PEV  +DHRT QGA  FA+LNQACF D A I V  GV+VE+PV+VLFVS  S      S+PR +++ G+ ++L + +S+ T  G+ H TN L  V + E A
Sbjct:   98 WFEAALEAAVPDTGLPPQVVEKRSEGKTLLPDHNVPQRKQEAWRFNNIQTMFAIEPSTPADSSSVSSDALAPYMYAETAGATAVFVDGVFRPELSDLGSVPDNVVFGAVSSVGDRLSETHLGMLDEL----PEVKGSDHRTNQGAAAFAALNQACFVDSACIYVPDGVQVEQPVEVLFVSTASTSARPTSYPRAIIAMGKDAELSLVQSYATVGGDKHFTNGLTVVAIDENA 325          
BLAST of mRNA_C-tenellus_contig10793.1.1 vs. uniprot
Match: A0A2V7UJP9_9BACT (Fe-S cluster assembly protein SufD n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7UJP9_9BACT)

HSP 1 Score: 96.7 bits (239), Expect = 2.420e-17
Identity = 77/231 (33.33%), Postives = 122/231 (52.81%), Query Frame = 2
Query:  365 EWFDWVRGQAPPRPEALAELSSAAEKKLEEIPLPNRKQEPFRYTELEKMFRTNF--VAGGAGSLATGEAVSEFRSADS-AGQQLVFVNGILNKELSDTSGLVGIEGLVATHLGGVSAEHMPQVQELLAHLPEVDADHRTRQGALPFASLNQACFSDVAVIMVEPGVEVEKPVQVLFVSDGSVGPS--ISHPRLLVSAGQGSKLRIRESFTGF-GESHLTNALGRVIVHEGA 1039
            E+  +  G++ P P  L E    A  + ++   P   +E +R+T +  + RT F   A G GS      V+ F    +  G Q+VFV+G L   LS    +    GL    L  V +    + + L +HL  V +D     GA  FA LN A F D A + + PG+ V+KP+ ++F+S    GP+  ISHPR +V AG+GS+++I ES+ G  G ++L NA+ ++++ +GA
Sbjct:   10 EFEAFAAGRSTPEPAWLREQREEAIARFQDRGFPTVAEEEWRFTSVAPIARTAFRRPAPGEGSGVRTADVAAFGFEGAFEGHQIVFVDGRLAPGLSS---ITPEGGLQICSLADVLSR---EPERLRSHLGRVVSD-----GASSFADLNAAFFEDGAFVFIPPGLAVDKPIHLVFMSSRGTGPASTISHPRTVVVAGRGSQVQIVESYAGVPGAAYLANAVTQIVLEDGA 229          
BLAST of mRNA_C-tenellus_contig10793.1.1 vs. uniprot
Match: A0A8J7E6Q9_9CYAN (Fe-S cluster assembly protein SufD n=1 Tax=Nodosilinea sp. LEGE 07088 TaxID=2777968 RepID=A0A8J7E6Q9_9CYAN)

HSP 1 Score: 95.1 bits (235), Expect = 7.160e-17
Identity = 78/232 (33.62%), Postives = 115/232 (49.57%), Query Frame = 2
Query:  392 APPRPEALAELSSAAEKKLEEIPLPNRKQEPFRYTELEKMFRTNFVAGGAGSLATGEAVSEFRSADSAGQQLVFVNGILNKELSDTSGLVGIEGLVATHLGGVSAEHMPQVQELLAHLPEVDADHRTRQGALPFASLNQACFSDVAVIMVEPGVEVEKPVQVLFVSDGSVGPSISHPRLLVSAGQGSKLRIRESFTG-FGESHLTNALGRVIVHEGADVVSIRFEIYYCGGF 1084
            A P   AL+EL + AE  L+E   P+ +QE +R+T+L  +   +F A  A    T   V+  R  ++AG Q+V VNG ++ ELS    L   EG +   LG    E +P+V + LA   +    H        F +LN   F D  V+ +   V VE P+Q++++S     P+++ PR LV A  GS L + E F G F   HLTNA+  + +   A V   R +    G F
Sbjct:   31 AVPAAVALSELRARAEALLKEQIFPSTRQEDWRFTDLSALLSVDF-APAAEPAWTEAGVAGLRLPETAGAQIVVVNGRVSAELSHLGSLP--EGAIVGSLGS-RPELLPKVADRLA---QASGGHEV------FTALNTVGFQDAVVVWLPRNVVVETPMQIIYISHTQGAPTMALPRCLVVAESGSSLTLVEDFWGDFAGIHLTNAVTEIWLDASAQVNHSRIQREGAGTF 249          
BLAST of mRNA_C-tenellus_contig10793.1.1 vs. uniprot
Match: A0A7V9NID7_9BACT (Fe-S cluster assembly protein SufD n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V9NID7_9BACT)

HSP 1 Score: 94.4 bits (233), Expect = 1.300e-16
Identity = 80/227 (35.24%), Postives = 110/227 (48.46%), Query Frame = 2
Query:  377 WVRGQAPP--RPEALAELSSAAEKKLEEIPLPNRKQEPFRYTELEKMFRTNFVAGGAGSLATGEAVSEFRSADSAGQQLVFVNGILNKELSDTSGLVGI--EGLVATHLGGVSAEHMPQVQELLAHLPEVDADHRTRQGALPFASLNQACFSDVAVIMVEPGVEVEKPVQVLFVS--DGSVGPSISHPRLLVSAGQGSKLRIRESFTGFGESHLTNALGRVIVHEGA 1039
            WV   APP   P  L  L      +   +  P  + E +R+T +  +   +F   G  S  T   +++F   D+A  +LV VNG  + ELS   GL      G +A  L G   E     QE L  L +VD           FA+LN A   D A + +  G  VE P+Q+LFVS  D   G  +SHPRLLV AG+ S+ R+ E++ G G S+ TN +  V+V EGA
Sbjct:   11 WVSA-APPVAGPRWLQALRERGTARFRALGFPTVRDEEWRFTNVSPISNGDFRPAGP-SPVTLNRLAQFIYGDAA-HRLVVVNGRFSPELSRLDGLPQTVRAGSLAGVLHGGQQEDSDLAQEHLGALADVDDR--------AFAALNTAHLDDGAYVFIADGAVVEDPLQILFVSSPDAGSGAPVSHPRLLVVAGENSQARMVETYVGTGGSYFTNGVTEVVVGEGA 226          
BLAST of mRNA_C-tenellus_contig10793.1.1 vs. uniprot
Match: A0A0G4FNN7_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FNN7_9ALVE)

HSP 1 Score: 95.1 bits (235), Expect = 1.690e-16
Identity = 79/229 (34.50%), Postives = 114/229 (49.78%), Query Frame = 2
Query:  368 WFDWVRGQAPPRPEALAELSSAA-EKKLEEIPLPNRKQEPFRYTE-LEKMFRTNFVAGGAGSLAT--GEAVSEFRSADSAGQQLVFVNGILNKELSDTSGLVGIEGLVATHLGGVSAEHMPQVQE--LLAHLPEVDADHRTRQ---------------GALPFASLNQACFSDVAVIMVEPGVEVEKPVQVLFV------SDGSVGPSISHPRLLVSAGQGSKLRIRES 973
            W   V  ++P    AL E + A  E  L+ +P P RK E FR+ + L+K+++T F +   G   +   EA+S F   D A   LV VNG++  ELS  S            LGG   E +  ++   LL+ +PE     + R                G   FA+LN AC SD AV+ V PGV+VEKP+Q+L V      SD    P+ SHPR+++S G+G++ R+  S
Sbjct:  118 WNGIVNSRSPDVVSALVEQTRAVGETALKSVPNPTRKLEAFRHQKNLDKLYQTQFKSSSDGKTVSVSREALSPF-VCDEAEDVLVLVNGVVRPELSALS---SASEFYLGSLGGAGDEIVSVLEREGLLSFIPEWTNFDQLRDYEDSYPVFDRKKFDHGMAKFAALNLACASDAAVLRVNPGVKVEKPLQILHVAVAPEESDAETLPTASHPRVILSMGEGAQARVVHS 342          
BLAST of mRNA_C-tenellus_contig10793.1.1 vs. uniprot
Match: A0A6M0G4P3_9CYAN (Fe-S cluster assembly protein SufD n=1 Tax=Symploca sp. SIO2E6 TaxID=2607809 RepID=A0A6M0G4P3_9CYAN)

HSP 1 Score: 93.6 bits (231), Expect = 2.410e-16
Identity = 70/227 (30.84%), Postives = 115/227 (50.66%), Query Frame = 2
Query:  413 LAELSSAAEKKLEEIPLPNRKQEPFRYTELEKMFRTNFVAGGAGSLATGEAV--SEFRSADSAGQQLVFVNGILNKELSDTSGLVGIEGLVATHLGGVSAEHMPQVQELLAHLPEVDADHRTRQGALP-FASLNQACFSDVAVIMVEPGVEVEKPVQVLFVSDGSVGPSISHPRLLVSAGQGSKLRIRESFTG---------FGESHLTNALGRVIVHEGADVVSIR 1057
            L EL  +AE  ++E+ +P+++QE +R+T+L  + +  F A    S+++G  +  S F   ++A   LVF+NG+   +LS  +GL    G+   +L  +  E+  ++Q+ L            +QGA   F +LN A  +DVAV+ V     VE+P+Q+LFV      P I  PR LV A  GS+L++ E +             + + TN +  + V E A V   R
Sbjct:   32 LEELRHSAEAIVQELAIPSKRQEEWRFTDLSSLLQVQFQAVDPQSISSGSQLDLSPFTLPETAQSCLVFINGVYAPQLSTVTGLPA--GVFVGNLAALPPEYTSRLQDYLGR----------QQGASEVFTALNTAGLTDVAVVWVAKDTIVEQPIQLLFVCTTQAAPIICQPRCLVVAEAGSQLQLVEHYGADIEGCPDIPINKPYFTNQVTEIWVEENAAVTHTR 246          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10793.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLY7_ECTSI7.820e-6346.85FeS assembly protein SufD n=1 Tax=Ectocarpus silic... [more]
A0A6H5JB34_9PHAE1.880e-5947.41SufBD_N domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CQZ7_9STRA1.350e-4444.49SufBD_N domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S2MCQ0_9STRA1.650e-2737.45Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2W6I7_9STRA1.720e-2436.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2V7UJP9_9BACT2.420e-1733.33Fe-S cluster assembly protein SufD n=1 Tax=Acidoba... [more]
A0A8J7E6Q9_9CYAN7.160e-1733.62Fe-S cluster assembly protein SufD n=1 Tax=Nodosil... [more]
A0A7V9NID7_9BACT1.300e-1635.24Fe-S cluster assembly protein SufD n=1 Tax=Acidoba... [more]
A0A0G4FNN7_9ALVE1.690e-1634.50Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A6M0G4P3_9CYAN2.410e-1630.84Fe-S cluster assembly protein SufD n=1 Tax=Symploc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10793contigC-tenellus_contig10793:1392..5328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LLY7
Preferred namesufD
PFAMsUPF0051
Model size2546
Max annot lvl2759|Eukaryota
KEGG koko:K09015
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0003006,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006790,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009668,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010027,GO:0010154,GO:0016043,GO:0016226,GO:0022414,GO:0022607,GO:0031163,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0051186,GO:0061024,GO:0061458,GO:0071840
Exons4
Evalue6.7e-69
EggNOG OGsCOG0719@1|root,2QSI1@2759|Eukaryota
Ec32 ortholog descriptionSUF system FeS cluster assembly, SufBD
Ec32 orthologEc-14_002160.1
Descriptionthylakoid membrane organization
Cds size951
COG categoryO
BRITEko00000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10793.1.1prot_C-tenellus_contig10793.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10793 1534..3875 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789149.164086-UTR-C-tenellus_contig10793:1391..15331680789149.164086-UTR-C-tenellus_contig10793:1391..1533Choristocarpus tenellus KU2346UTRC-tenellus_contig10793 1392..1533 +
1680789149.2172263-UTR-C-tenellus_contig10793:3875..53281680789149.2172263-UTR-C-tenellus_contig10793:3875..5328Choristocarpus tenellus KU2346UTRC-tenellus_contig10793 3876..5328 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789149.1762178-CDS-C-tenellus_contig10793:1533..18201680789149.1762178-CDS-C-tenellus_contig10793:1533..1820Choristocarpus tenellus KU2346CDSC-tenellus_contig10793 1534..1820 +
1680789149.1844566-CDS-C-tenellus_contig10793:2472..27641680789149.1844566-CDS-C-tenellus_contig10793:2472..2764Choristocarpus tenellus KU2346CDSC-tenellus_contig10793 2473..2764 +
1680789149.1947205-CDS-C-tenellus_contig10793:3164..33171680789149.1947205-CDS-C-tenellus_contig10793:3164..3317Choristocarpus tenellus KU2346CDSC-tenellus_contig10793 3165..3317 +
1680789149.207517-CDS-C-tenellus_contig10793:3656..38751680789149.207517-CDS-C-tenellus_contig10793:3656..3875Choristocarpus tenellus KU2346CDSC-tenellus_contig10793 3657..3875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10793.1.1

>prot_C-tenellus_contig10793.1.1 ID=prot_C-tenellus_contig10793.1.1|Name=mRNA_C-tenellus_contig10793.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=317bp
MAPLTLALVTTVLALIAHCDAFIPPSSVTHWCQARYGARTGWLGRSGTGG
AVLAETSEPETTASEVMSERRDPKEWFDWVRGQAPPRPEALAELSSAAEK
KLEEIPLPNRKQEPFRYTELEKMFRTNFVAGGAGSLATGEAVSEFRSADS
AGQQLVFVNGILNKELSDTSGLVGIEGLVATHLGGVSAEHMPQVQELLAH
LPEVDADHRTRQGALPFASLNQACFSDVAVIMVEPGVEVEKPVQVLFVSD
GSVGPSISHPRLLVSAGQGSKLRIRESFTGFGESHLTNALGRVIVHEGAD
VVSIRFEIYYCGGFEE*
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mRNA from alignment at C-tenellus_contig10793:1392..5328+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10793.1.1 ID=mRNA_C-tenellus_contig10793.1.1|Name=mRNA_C-tenellus_contig10793.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3937bp|location=Sequence derived from alignment at C-tenellus_contig10793:1392..5328+ (Choristocarpus tenellus KU2346)
GTGCAAGTACCTCTTGAAAACTACAAGGCACCAAGGCCCTCCACAAGAAC TTGAGTGATAGAGGCTGCTTTGGAAGTTGCAACCATTGGGTTGTTGCGCT GAATATCGTCTGACGGTGTAGCTCCTCAACAACGTGGGGCCGATGGCTCC ATTGACGCTTGCATTAGTGACAACAGTATTGGCACTGATAGCACATTGTG ATGCGTTCATACCTCCAAGCTCCGTAACGCATTGGTGTCAAGCACGTTAT GGCGCAAGAACTGGATGGTTAGGGCGGTCTGGTACGGGAGGAGCGGTATT GGCGGAAACATCAGAACCTGAGACGACAGCGTCTGAGGTTATGTCTGAGC GTAGGGACCCGAAGGAGTGGTTCGATTGGGTCAGAGGACAGGCCCCACCA CGCCCTGAAGCACTAGCAGAGCTTTCAAGGTTTGATTCGAAATATCAGTG TTGGACTTTTTTGAGATTCCGAATAGCACCCTTGAAATGTCATGCTCATG TAGTTTGTGGATATCCTGAGTGATAAACTGGAAGGGATCGGTTCCTTAGA ACTTTTGAATGACAAGTTTGCTACTGATGATTGAGCCCTTGACGTAGTAA GATAATTTTCTGATGTAAACATTGTTTGAGGGTATGGACGGACTACATCC ATTGCACTCTAGCCCAGTCGGGCTTGCTCTTTGTGGTTAATGACTTGCTT CCTGTATCGCGTCATGCTAATATTACTTTTTCTTATGGTACTGGATGCAG GACTGTCCTGTACTCTCTTTGTCGTACTTTGCATGGACATCTCATCGTAA TTCTGGCCTGGCTCTATGGAGTATTACATTTCTCGACACATCCTCTCCTG CGCGGCCCCCTTCGTTATGGAGGCCCTTGGTCTGTATAGACTGCGTTTTG TTGCGAATAATCGTCACAGCAGCACTAGCGCTATTTTCTATCCCTTGTGG CGTGCCCCTTTTCCCCATGATACTTGGCATGCTCCGACTCGTTCGTTGGA GTTTCCCCAACATCATTCCATTAAAAACTTCAACATCCTTACAACATGAC AACTCGGAACCTACTATTCTATTTCATCCAGCGCGGCGGAGAAGAAGCTG GAAGAAATACCGCTGCCAAACCGCAAGCAAGAGCCTTTTCGATACACAGA GTTAGAAAAAATGTTCCGGACTAACTTTGTGGCTGGCGGGGCAGGGAGCC TTGCAACAGGAGAAGCTGTGTCAGAGTTTCGCTCTGCCGATAGCGCTGGC CAACAGTTGGTGTTTGTGAACGGTATCCTCAATAAGGAGCTCAGCGACAC ATCTGGGCTGGTGGGGATAGAGGGTCTGGTGGCAACACACCTGGGGGGGG TGTCAGCAGAGCACATGCCACAGGCAAGTAATGTACATCGTAGTCATGTT TTGAATAGGAGAGGTGGAGACTGCCACGTGTCTTAGATCCCCATTATGTT TCCTTGTAGGGGTTCATGGTAACTCTGCCTTCTTCCCGCCTCCTTCCACC CTCTGAAACACGTGTTTTTGTTCCACTGATAATGTGGTCATTTTTCTTGG ATTTGGTGTTTGAGTCAATAAAGTAGTTATGAGTCTAGTGCAGGCACAAG TCATATTTTTATGTGTGATATTTTTATATGTCTGAGATCTCAAAGATATA TACTAGGTCTCCTTCCAACCTTTTGCCCCACCTGGAACCTATTGTTTGCA TTTTTTGCATTTATTATTTATCTGCACAGAATTGCATTTTTGTCGTTTCA TCAATAAATCAATGCCCTAACAGGTTCAGGAACTCCTGGCACATCTCCCA GAGGTGGATGCAGACCACCGTACTCGACAGGGAGCCCTTCCATTTGCCAG CCTTAACCAGGCATGTTTCTCAGACGTTGCAGTGATCATGGTGGAGCCTG GGGTAGAGGTTGAGAAGCCAGTCCAGGTGAGTGAGAAGATTTAGTTAAGG TTGGGGGGGGGCTAGGTGAATTGCTGCAGTTTCTCAGTTTGTAGCTCCAC TCATCTCTTCCGGCTCTTTCAATTATTCCGATTATTGTAAAGGCTACGTA ATTTGCCCCAGTGGCCTTTCTCCAACATCGAAGCTGGGAAGGAGTGTGGG GAATGGATTGAAGACAGATTGAAGATGGCTGCTGTCTTCAATGTGTTTGT TAACCCTTGCTGAACCCGGACTGTATGTATTTTTCCACATGCCGAAGCTT ACAGGGTTGGTCAGGAGGAAGCCTAACCCTAACACGATTGGCACACACGC CCCTGTCATAACCAGGTCCTATTTGTCTCGGACGGGTCGGTGGGGCCAAG CATTAGCCATCCTCGCCTACTGGTGTCTGCAGGGCAGGGGTCTAAATTGC GGATACGTGAGAGCTTCACTGGGTTTGGGGAGTCTCACTTGACGAATGCC TTGGGCAGGGTCATTGTCCACGAAGGGGCAGATGTGGTGAGTATCCGTTT TGAAATATACTACTGTGGAGGTTTTGAGGAATGAGGGTATCCTTGTCCTA TTCACTGCCGAGAATGTCTAATGTCTCTGCAGTTTCCAATTGGAAGTGTT TTGGTAATGATTCCTTTTTGGTTTGTTGGTTAGGAGTTTTGGATGATGCA GCAAATAGTGCACTTGTATGATGGCTCCTAGAGTGTCAAGTTTTGATTGA ACCAAATGACTTTATTGGTAATAGTATCCCCCCCTCCCCCCACTCCCCAG AGCGTTTAGAATAGTGGTGATCATTTTTGGGGAGCTGGGTTAAGCTGAAA GTGGAGGATATCCAACCGCTGCATTGTCACCGGTGTAGTAATCTTGTAAC TACTGTATATTTTTGAAGGGAGACTTGGATGTGCTGGAGGAGCAATAGTA TGTTGCACTTTTTGTTGTTCACCTGGAGGGCTGTAGCAAGAGGTTTTCCA CAACCTGCATTTGCTGGCATTGGGGTCATTGTTCTTGTATGCTGATGTCA GTTTCGATGTTTCTTGGCATGCAGTTCATTCAGGCGGTGAGTACCTGATC AATGGCTTTGCTGAAATATTTTTTCCTAGACAGAGTCAACTAAGTAACTG TAAAAGCATTGGCGTGTCCTATTTTGCTGCGTTGCAGTGTATTTATTTAC TTTTCATTTTGCTCTGACAGTTTCAAAAGTTGTTGCTCTCTCTTTTGTTG TAGTGGGTAGTGGTGGCGTGTGTTGTTAGGTCTTACATGTTAGCAAGCCC ACCACGGCAAAGATTTCAGCTCAATGGTACAGTCAGCACACCTCTAAGGG TGTGGATTGTTGATAGTAATAGTTCCAGTGAAAGTGAAGGCCACGCTCGA CTAACTTGCTCTGCTGGAACTGTGTGTATGTGTTTTTTTGTTTAATGAAT AAAAAGGTGTATAAATTGAATTAAATAAAAAATGGTGCCTACTGTTAATG TAGAACCATTACCGTATAGGGTTAGGGGTAGCGGTGGTGAAAGTGAGCCT GTGGCTGATGGAACGTGGAACATTAAATTCATGCATGTACATTTTTTTAA TTTGTGGTTTCAAAAATATAGAAAATAAATTTTGGGTGTGGAACTGTCTT CCTTTGGTCTATTGATTTGTGGTACCTGTGCTCACCCGAAATGATCTCTT GCCTATCTACAGGTATTGCGGATCTCTAGAAACAGGCAAAAGTGTAGAGT TGACTGTGAATTTGCTCAAATAATAGGTGATAGCTTGCATATGATCGACA TTGAGTGGTAGGTGAGAAATGAGGGTCTGATTCTTAGAGCTTCCGAAAGG CAGTGTTTATATGCTGTGTGATCACCCTGTCATTGTTCAAGGGCATGTGG ATACTCCTTCCCTCTGCAAATATGGGCATGTAGCAATGTTGTAGGTGGAA AGCCTACTCCTGATGTTGATAACTGTCACTCCTCCTTTGCAGTGTATCAT CATGCTGAAGATTGGAATGTAGATGTTTTTGTTTGCT
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Coding sequence (CDS) from alignment at C-tenellus_contig10793:1392..5328+

>mRNA_C-tenellus_contig10793.1.1 ID=mRNA_C-tenellus_contig10793.1.1|Name=mRNA_C-tenellus_contig10793.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=951bp|location=Sequence derived from alignment at C-tenellus_contig10793:1392..5328+ (Choristocarpus tenellus KU2346)
ATGGCTCCATTGACGCTTGCATTAGTGACAACAGTATTGGCACTGATAGC
ACATTGTGATGCGTTCATACCTCCAAGCTCCGTAACGCATTGGTGTCAAG
CACGTTATGGCGCAAGAACTGGATGGTTAGGGCGGTCTGGTACGGGAGGA
GCGGTATTGGCGGAAACATCAGAACCTGAGACGACAGCGTCTGAGGTTAT
GTCTGAGCGTAGGGACCCGAAGGAGTGGTTCGATTGGGTCAGAGGACAGG
CCCCACCACGCCCTGAAGCACTAGCAGAGCTTTCAAGCGCGGCGGAGAAG
AAGCTGGAAGAAATACCGCTGCCAAACCGCAAGCAAGAGCCTTTTCGATA
CACAGAGTTAGAAAAAATGTTCCGGACTAACTTTGTGGCTGGCGGGGCAG
GGAGCCTTGCAACAGGAGAAGCTGTGTCAGAGTTTCGCTCTGCCGATAGC
GCTGGCCAACAGTTGGTGTTTGTGAACGGTATCCTCAATAAGGAGCTCAG
CGACACATCTGGGCTGGTGGGGATAGAGGGTCTGGTGGCAACACACCTGG
GGGGGGTGTCAGCAGAGCACATGCCACAGGTTCAGGAACTCCTGGCACAT
CTCCCAGAGGTGGATGCAGACCACCGTACTCGACAGGGAGCCCTTCCATT
TGCCAGCCTTAACCAGGCATGTTTCTCAGACGTTGCAGTGATCATGGTGG
AGCCTGGGGTAGAGGTTGAGAAGCCAGTCCAGGTCCTATTTGTCTCGGAC
GGGTCGGTGGGGCCAAGCATTAGCCATCCTCGCCTACTGGTGTCTGCAGG
GCAGGGGTCTAAATTGCGGATACGTGAGAGCTTCACTGGGTTTGGGGAGT
CTCACTTGACGAATGCCTTGGGCAGGGTCATTGTCCACGAAGGGGCAGAT
GTGGTGAGTATCCGTTTTGAAATATACTACTGTGGAGGTTTTGAGGAATG
A
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