mRNA_C-linearis_contig10.519.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.519.1
Unique NamemRNA_C-linearis_contig10.519.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5KRF6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF6_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 3.940e-30
Identity = 60/129 (46.51%), Postives = 79/129 (61.24%), Query Frame = 2
Query:    5 GGYQGAYYPRRVMNIEDL-LEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDWHISRMQGR 388
            GGY G     RVM +ED+  EDE  EF +VY++   A   T     DCPF+ W+   E KD+ R+ FG RCLNCG + HFVR+C+K ++N S MLN  +  G++ EV  R  RWL+RLR W   RM+ R
Sbjct:  227 GGYGG-----RVMTVEDMDYEDECAEFQRVYDI--HAAPRTNSQATDCPFFAWFTSVEEKDRHRRAFGLRCLNCGSEGHFVRDCDKGYINASNMLNKNLATGSKAEVKARWDRWLHRLRQWQAHRMEER 348          
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5KBL4_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL4_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.360e-28
Identity = 60/129 (46.51%), Postives = 79/129 (61.24%), Query Frame = 2
Query:    5 GGYQGAYYPRRVMNIEDL-LEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDWHISRMQGR 388
            GGY G     RVM +ED+  EDE  EF +VY++   A   T     DCPF+ W+   E KD+ RQ FG RCLNCG + HFVR+C+K ++N S MLN  +   ++ EV  R  RWL+RLR W  +RM+ R
Sbjct:  426 GGYGG-----RVMTVEDMDYEDECAEFKRVYDI--HAAPRTNSQATDCPFFAWFTSVEEKDRHRQAFGLRCLNCGSEGHFVRDCDKGYINTSNMLNKNLATESKAEVKARWDRWLHRLRQWQSNRMEER 547          
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5K0Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.460e-28
Identity = 54/121 (44.63%), Postives = 74/121 (61.16%), Query Frame = 2
Query:    5 GGYQGAYYPRRVMNIEDL-LEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDW 364
            G   G Y  RRVM +ED+  ED+ +EF +VY +    +  T     DCPF+ W+   E KD+ R+ FG+RCLNCG +  FVR+C K ++N S MLN  +  G++ EV  R  RWLNRL+ W
Sbjct:  168 GRSDGGYGGRRVMTVEDMDYEDKCEEFKRVYGIHSSPR--TNSQVNDCPFFAWFTSVEEKDRHRRAFGSRCLNCGSEGQFVRDCVKGYINASSMLNRNLANGSKAEVKARWDRWLNRLQQW 286          
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5K1N6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N6_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 2.390e-26
Identity = 57/123 (46.34%), Postives = 79/123 (64.23%), Query Frame = 2
Query:   14 QGAYYPRRVMNIEDLLEDENDEFHQVYNVTGFAKQFTTGNRRDC--PFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDWHISR 376
            QGA    RVMNI + +EDE  EF +V+ V   A Q+  G   +   PFY  ++ R+ +D+ARQ +G +CLNCG+ +HFVR C  PF+N S MLN ++G+G  + V +R  +WL RLRDWH  R
Sbjct:  721 QGA----RVMNIHEEMEDEEKEFKKVHYV---ATQWEKGKGDESYIPFYTRFDSRKEQDEARQAYGLKCLNCGDQSHFVRECTHPFINKSNMLNPELGQGPPQLVKERWSKWLKRLRDWHEQR 836          
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: D7G674_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G674_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 7.040e-17
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 2
Query:    5 GGYQGAYYPRRVMNIEDL-LEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFM 268
            G   G Y  RRVM ++++  EDE  EF +VY++       T    +DCPF+ W+   E KD+ R+ FG+RCL CG + HFVR+C+K ++
Sbjct:  164 GRLDGGYGGRRVMTVDEVDCEDECAEFQRVYDI--HVSPRTNSQMKDCPFFAWFTSVEEKDRHRRAFGSRCLKCGSEGHFVRDCDKGYI 250          
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5KNG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG1_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.500e-13
Identity = 45/119 (37.82%), Postives = 62/119 (52.10%), Query Frame = 2
Query:   14 QGAYYPRRVMNIEDLLEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCG--EDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDW 364
            QG+   R VM +    +DE+ EF QV  V+   K F   N  D PFY  +   + +D+AR+EFG +CLNCG  E  H  R C    MNVS +++  +  G  + V    +RW  RL  W
Sbjct:  254 QGSAGARAVMTVAQY-DDESREFWQVSQVSRGNKGFGR-NDDDPPFYVQFTNNKERDRARREFGPKCLNCGVEEPFHLARECPDKLMNVSGLIHPDIAVGDPETVEKNWRRWQQRLCSW 370          
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5JHS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHS6_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.960e-13
Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = 2
Query:   62 EDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCG--EDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDW 364
            +DE+ EF QV  V+   K F   N  D PFY  +   + +D+AR+EFG +CLNCG  E  H  R C    MNVS +++  +  G  + V    +RW  RL  W
Sbjct:    7 DDESREFWQVSQVSRGNKGFGL-NDDDPPFYVQFTNNQERDRARREFGPKCLNCGVEEPFHLARECPDKLMNVSGLIHPDIAVGDPETVEKNWRRWQQRLCSW 108          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KRF6_9PHAE3.940e-3046.51CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KBL4_9PHAE1.360e-2846.51CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5K0Q4_9PHAE2.460e-2844.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1N6_9PHAE2.390e-2646.34CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G674_ECTSI7.040e-1741.57CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KNG1_9PHAE2.500e-1337.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHS6_9PHAE3.960e-1338.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:1716902..1717377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size476
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.519.1prot_C-linearis_contig10.519.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 1716942..1717295 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927337.3643858-UTR-C-linearis_contig10:1716901..17169411622927337.3643858-UTR-C-linearis_contig10:1716901..1716941Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1716902..1716941 +
1690879635.0345757-UTR-C-linearis_contig10:1716901..17169411690879635.0345757-UTR-C-linearis_contig10:1716901..1716941Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1716902..1716941 +
1622927337.386442-UTR-C-linearis_contig10:1717295..17173771622927337.386442-UTR-C-linearis_contig10:1717295..1717377Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1717296..1717377 +
1690879635.0560088-UTR-C-linearis_contig10:1717295..17173771690879635.0560088-UTR-C-linearis_contig10:1717295..1717377Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1717296..1717377 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927337.3745317-CDS-C-linearis_contig10:1716941..17172951622927337.3745317-CDS-C-linearis_contig10:1716941..1717295Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1716942..1717295 +
1690879635.0450552-CDS-C-linearis_contig10:1716941..17172951690879635.0450552-CDS-C-linearis_contig10:1716941..1717295Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1716942..1717295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.519.1

>prot_C-linearis_contig10.519.1 ID=prot_C-linearis_contig10.519.1|Name=mRNA_C-linearis_contig10.519.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=118bp
MNIEDLLEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKA
RQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQR
WLNRLRDWHISRMQGRN*
back to top

mRNA from alignment at C-linearis_contig10:1716902..1717377+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.519.1 ID=mRNA_C-linearis_contig10.519.1|Name=mRNA_C-linearis_contig10.519.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=476bp|location=Sequence derived from alignment at C-linearis_contig10:1716902..1717377+ (Chordaria linearis ClinC8C monoicous)
GGGGGGTGGTTACCAAGGGGCGTACTACCCAAGGCGTGTGATGAACATTG AGGATTTGTTGGAAGACGAGAACGACGAATTCCATCAAGTGTACAACGTT ACCGGCTTCGCTAAGCAGTTCACCACCGGGAACAGACGCGATTGTCCGTT CTATAAGTGGTATGAGCAGAGGGAACTCAAGGACAAGGCCCGCCAAGAGT TTGGGGCGCGGTGCTTGAATTGTGGTGAGGACAACCACTTCGTGCGTAAC TGCAACAAACCATTCATGAACGTCTCAAAAATGCTCAACGACAAGATGGG CGAAGGCACAGAAAAAGAGGTGCATGACCGGCTACAAAGGTGGTTGAACC GCTTGCGTGACTGGCACATTTCTCGCATGCAAGGGCGTAACTGAAGGTGC GACGGTCGTTTGGCCAGCACGCCGGAAGCATCTAGGCCGTCTGCCTTGTG GGGTACAGGAAAGAAACCACGAGTGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig10:1716902..1717377+

>mRNA_C-linearis_contig10.519.1 ID=mRNA_C-linearis_contig10.519.1|Name=mRNA_C-linearis_contig10.519.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at C-linearis_contig10:1716902..1717377+ (Chordaria linearis ClinC8C monoicous)
ATGAACATTGAGGATTTGTTGGAAGACGAGAACGACGAATTCCATCAAGT
GTACAACGTTACCGGCTTCGCTAAGCAGTTCACCACCGGGAACAGACGCG
ATTGTCCGTTCTATAAGTGGTATGAGCAGAGGGAACTCAAGGACAAGGCC
CGCCAAGAGTTTGGGGCGCGGTGCTTGAATTGTGGTGAGGACAACCACTT
CGTGCGTAACTGCAACAAACCATTCATGAACGTCTCAAAAATGCTCAACG
ACAAGATGGGCGAAGGCACAGAAAAAGAGGTGCATGACCGGCTACAAAGG
TGGTTGAACCGCTTGCGTGACTGGCACATTTCTCGCATGCAAGGGCGTAA
CTGAATGAACATTGAGGATTTGTTGGAAGACGAGAACGACGAATTCCATC
AAGTGTACAACGTTACCGGCTTCGCTAAGCAGTTCACCACCGGGAACAGA
CGCGATTGTCCGTTCTATAAGTGGTATGAGCAGAGGGAACTCAAGGACAA
GGCCCGCCAAGAGTTTGGGGCGCGGTGCTTGAATTGTGGTGAGGACAACC
ACTTCGTGCGTAACTGCAACAAACCATTCATGAACGTCTCAAAAATGCTC
AACGACAAGATGGGCGAAGGCACAGAAAAAGAGGTGCATGACCGGCTACA
AAGGTGGTTGAACCGCTTGCGTGACTGGCACATTTCTCGCATGCAAGGGC
GTAACTGA
back to top