mRNA_C-linearis_contig10.519.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5KRF6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF6_9PHAE) HSP 1 Score: 121 bits (303), Expect = 3.940e-30 Identity = 60/129 (46.51%), Postives = 79/129 (61.24%), Query Frame = 2
Query: 5 GGYQGAYYPRRVMNIEDL-LEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDWHISRMQGR 388
GGY G RVM +ED+ EDE EF +VY++ A T DCPF+ W+ E KD+ R+ FG RCLNCG + HFVR+C+K ++N S MLN + G++ EV R RWL+RLR W RM+ R
Sbjct: 227 GGYGG-----RVMTVEDMDYEDECAEFQRVYDI--HAAPRTNSQATDCPFFAWFTSVEEKDRHRRAFGLRCLNCGSEGHFVRDCDKGYINASNMLNKNLATGSKAEVKARWDRWLHRLRQWQAHRMEER 348
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5KBL4_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL4_9PHAE) HSP 1 Score: 119 bits (299), Expect = 1.360e-28 Identity = 60/129 (46.51%), Postives = 79/129 (61.24%), Query Frame = 2
Query: 5 GGYQGAYYPRRVMNIEDL-LEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDWHISRMQGR 388
GGY G RVM +ED+ EDE EF +VY++ A T DCPF+ W+ E KD+ RQ FG RCLNCG + HFVR+C+K ++N S MLN + ++ EV R RWL+RLR W +RM+ R
Sbjct: 426 GGYGG-----RVMTVEDMDYEDECAEFKRVYDI--HAAPRTNSQATDCPFFAWFTSVEEKDRHRQAFGLRCLNCGSEGHFVRDCDKGYINTSNMLNKNLATESKAEVKARWDRWLHRLRQWQSNRMEER 547
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5K0Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE) HSP 1 Score: 115 bits (287), Expect = 2.460e-28 Identity = 54/121 (44.63%), Postives = 74/121 (61.16%), Query Frame = 2
Query: 5 GGYQGAYYPRRVMNIEDL-LEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDW 364
G G Y RRVM +ED+ ED+ +EF +VY + + T DCPF+ W+ E KD+ R+ FG+RCLNCG + FVR+C K ++N S MLN + G++ EV R RWLNRL+ W
Sbjct: 168 GRSDGGYGGRRVMTVEDMDYEDKCEEFKRVYGIHSSPR--TNSQVNDCPFFAWFTSVEEKDRHRRAFGSRCLNCGSEGQFVRDCVKGYINASSMLNRNLANGSKAEVKARWDRWLNRLQQW 286
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5K1N6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N6_9PHAE) HSP 1 Score: 114 bits (284), Expect = 2.390e-26 Identity = 57/123 (46.34%), Postives = 79/123 (64.23%), Query Frame = 2
Query: 14 QGAYYPRRVMNIEDLLEDENDEFHQVYNVTGFAKQFTTGNRRDC--PFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDWHISR 376
QGA RVMNI + +EDE EF +V+ V A Q+ G + PFY ++ R+ +D+ARQ +G +CLNCG+ +HFVR C PF+N S MLN ++G+G + V +R +WL RLRDWH R
Sbjct: 721 QGA----RVMNIHEEMEDEEKEFKKVHYV---ATQWEKGKGDESYIPFYTRFDSRKEQDEARQAYGLKCLNCGDQSHFVRECTHPFINKSNMLNPELGQGPPQLVKERWSKWLKRLRDWHEQR 836
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: D7G674_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G674_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 7.040e-17 Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 2
Query: 5 GGYQGAYYPRRVMNIEDL-LEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFM 268
G G Y RRVM ++++ EDE EF +VY++ T +DCPF+ W+ E KD+ R+ FG+RCL CG + HFVR+C+K ++
Sbjct: 164 GRLDGGYGGRRVMTVDEVDCEDECAEFQRVYDI--HVSPRTNSQMKDCPFFAWFTSVEEKDRHRRAFGSRCLKCGSEGHFVRDCDKGYI 250
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5KNG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG1_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 2.500e-13 Identity = 45/119 (37.82%), Postives = 62/119 (52.10%), Query Frame = 2
Query: 14 QGAYYPRRVMNIEDLLEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCG--EDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDW 364
QG+ R VM + +DE+ EF QV V+ K F N D PFY + + +D+AR+EFG +CLNCG E H R C MNVS +++ + G + V +RW RL W
Sbjct: 254 QGSAGARAVMTVAQY-DDESREFWQVSQVSRGNKGFGR-NDDDPPFYVQFTNNKERDRARREFGPKCLNCGVEEPFHLARECPDKLMNVSGLIHPDIAVGDPETVEKNWRRWQQRLCSW 370
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5JHS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHS6_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 3.960e-13 Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = 2
Query: 62 EDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCG--EDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDW 364
+DE+ EF QV V+ K F N D PFY + + +D+AR+EFG +CLNCG E H R C MNVS +++ + G + V +RW RL W
Sbjct: 7 DDESREFWQVSQVSRGNKGFGL-NDDDPPFYVQFTNNQERDRARREFGPKCLNCGVEEPFHLARECPDKLMNVSGLIHPDIAVGDPETVEKNWRRWQQRLCSW 108 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.519.1 >prot_C-linearis_contig10.519.1 ID=prot_C-linearis_contig10.519.1|Name=mRNA_C-linearis_contig10.519.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=118bp MNIEDLLEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKAback to top mRNA from alignment at C-linearis_contig10:1716902..1717377+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.519.1 ID=mRNA_C-linearis_contig10.519.1|Name=mRNA_C-linearis_contig10.519.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=476bp|location=Sequence derived from alignment at C-linearis_contig10:1716902..1717377+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1716902..1717377+ >mRNA_C-linearis_contig10.519.1 ID=mRNA_C-linearis_contig10.519.1|Name=mRNA_C-linearis_contig10.519.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at C-linearis_contig10:1716902..1717377+ (Chordaria linearis ClinC8C monoicous)back to top |