prot_C-linearis_contig10.519.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.519.1
Unique Nameprot_C-linearis_contig10.519.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length118
Homology
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5KRF6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF6_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 5.800e-27
Identity = 54/117 (46.15%), Postives = 73/117 (62.39%), Query Frame = 0
Query:    1 MNIEDL-LEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDWHISRMQGR 116
            M +ED+  EDE  EF +VY++   A   T     DCPF+ W+   E KD+ R+ FG RCLNCG + HFVR+C+K ++N S MLN  +  G++ EV  R  RWL+RLR W   RM+ R
Sbjct:  234 MTVEDMDYEDECAEFQRVYDI--HAAPRTNSQATDCPFFAWFTSVEEKDRHRRAFGLRCLNCGSEGHFVRDCDKGYINASNMLNKNLATGSKAEVKARWDRWLHRLRQWQAHRMEER 348          
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5KBL4_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL4_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.270e-25
Identity = 54/117 (46.15%), Postives = 73/117 (62.39%), Query Frame = 0
Query:    1 MNIEDL-LEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDWHISRMQGR 116
            M +ED+  EDE  EF +VY++   A   T     DCPF+ W+   E KD+ RQ FG RCLNCG + HFVR+C+K ++N S MLN  +   ++ EV  R  RWL+RLR W  +RM+ R
Sbjct:  433 MTVEDMDYEDECAEFKRVYDI--HAAPRTNSQATDCPFFAWFTSVEEKDRHRQAFGLRCLNCGSEGHFVRDCDKGYINTSNMLNKNLATESKAEVKARWDRWLHRLRQWQSNRMEER 547          
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5K1N6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N6_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 3.730e-24
Identity = 52/114 (45.61%), Postives = 74/114 (64.91%), Query Frame = 0
Query:    1 MNIEDLLEDENDEFHQVYNVTGFAKQFTTGNRRDC--PFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDWHISR 112
            MNI + +EDE  EF +V+ V   A Q+  G   +   PFY  ++ R+ +D+ARQ +G +CLNCG+ +HFVR C  PF+N S MLN ++G+G  + V +R  +WL RLRDWH  R
Sbjct:  726 MNIHEEMEDEEKEFKKVHYV---ATQWEKGKGDESYIPFYTRFDSRKEQDEARQAYGLKCLNCGDQSHFVRECTHPFINKSNMLNPELGQGPPQLVKERWSKWLKRLRDWHEQR 836          
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5K0Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.700e-23
Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 0
Query:    1 MNIEDL-LEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDW 108
            M +ED+  ED+ +EF +VY +    +  T     DCPF+ W+   E KD+ R+ FG+RCLNCG +  FVR+C K ++N S MLN  +  G++ EV  R  RWLNRL+ W
Sbjct:  180 MTVEDMDYEDKCEEFKRVYGIHSSPR--TNSQVNDCPFFAWFTSVEEKDRHRRAFGSRCLNCGSEGQFVRDCVKGYINASSMLNRNLANGSKAEVKARWDRWLNRLQQW 286          
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5JHS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHS6_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 6.580e-13
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 0
Query:    8 EDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCG--EDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDWHISRMQGR 116
            +DE+ EF QV  V+   K F   N  D PFY  +   + +D+AR+EFG +CLNCG  E  H  R C    MNVS +++  +  G  + V    +RW  RL  W  ++ + R
Sbjct:    7 DDESREFWQVSQVSRGNKGFGL-NDDDPPFYVQFTNNQERDRARREFGPKCLNCGVEEPFHLARECPDKLMNVSGLIHPDIAVGDPETVEKNWRRWQQRLCSWADTQRKKR 116          
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: D7G674_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G674_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 4.490e-12
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 0
Query:    8 EDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCGEDNHFVRNCNKPFM 76
            EDE  EF +VY++       T    +DCPF+ W+   E KD+ R+ FG+RCL CG + HFVR+C+K ++
Sbjct:  184 EDECAEFQRVYDI--HVSPRTNSQMKDCPFFAWFTSVEEKDRHRRAFGSRCLKCGSEGHFVRDCDKGYI 250          
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Match: A0A6H5KNG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG1_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.060e-11
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 0
Query:    8 EDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKARQEFGARCLNCG--EDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQRWLNRLRDWHISRMQGR 116
            +DE+ EF QV  V+   K F   N  D PFY  +   + +D+AR+EFG +CLNCG  E  H  R C    MNVS +++  +  G  + V    +RW  RL  W  ++ + R
Sbjct:  269 DDESREFWQVSQVSRGNKGFGR-NDDDPPFYVQFTNNKERDRARREFGPKCLNCGVEEPFHLARECPDKLMNVSGLIHPDIAVGDPETVEKNWRRWQQRLCSWADTQRKKR 378          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.519.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KRF6_9PHAE5.800e-2746.15CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KBL4_9PHAE1.270e-2546.15CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5K1N6_9PHAE3.730e-2445.61CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K0Q4_9PHAE1.700e-2344.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHS6_9PHAE6.580e-1336.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G674_ECTSI4.490e-1243.48CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KNG1_9PHAE2.060e-1136.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 57..71
score: 8.845

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:1716942..1717295 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.519.1mRNA_C-linearis_contig10.519.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 1716902..1717377 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.519.1 ID=prot_C-linearis_contig10.519.1|Name=mRNA_C-linearis_contig10.519.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=118bp
MNIEDLLEDENDEFHQVYNVTGFAKQFTTGNRRDCPFYKWYEQRELKDKA
RQEFGARCLNCGEDNHFVRNCNKPFMNVSKMLNDKMGEGTEKEVHDRLQR
WLNRLRDWHISRMQGRN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC