prot_C-linearis_contig98.17135.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig98.17135.1
Unique Nameprot_C-linearis_contig98.17135.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length111
Homology
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BLAST of mRNA_C-linearis_contig98.17135.1 vs. uniprot
Match: D8LJU1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU1_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.930e-15
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 0 
Query:   17 MTERLRLLHEKRAILSSELREFSARSGASSSERLIAADNAVAVMATAGLTGVLAGVAAARFFAARRTNRSRPRRGGGVDETKRF 100
            MT+RL+LLHE++  LSSELR  SA+  +SS+ RL+AADNA+A M T+G+ GV AG A ARF AARR      RR    D+ + F
Sbjct:    1 MTQRLKLLHEEKTALSSELRTLSAKGSSSSTVRLVAADNAMAAMVTSGIIGVFAGGALARFLAARRGRSRLSRRQQDKDKDRHF 84
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig98.17135.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJU1_ECTSI2.930e-1553.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 56..79
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..55
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 80..110
NoneNo IPR availableTMHMMTMhelixcoord: 58..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig98contigC-linearis_contig98:481428..483224 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig98.17135.1mRNA_C-linearis_contig98.17135.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig98 481359..484302 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig98.17135.1 ID=prot_C-linearis_contig98.17135.1|Name=mRNA_C-linearis_contig98.17135.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=111bp
MELEQRDAEAEALCHGMTERLRLLHEKRAILSSELREFSARSGASSSERL
IAADNAVAVMATAGLTGVLAGVAAARFFAARRTNRSRPRRGGGVDETKRF
DWPPPKAPSS*
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