Homology
BLAST of mRNA_C-linearis_contig98.17135.1 vs. uniprot
Match:
D8LJU1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU1_ECTSI)
HSP 1 Score: 74.3 bits (181), Expect = 6.920e-13
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 1
Query: 118 MTERLRLLHEKRAILSSELREFSARSGASSSERLIAADNAVAVMATAGLTGVLAGVAAARFFAARRTNRSRPRRGGGVDETKRF 369
MT+RL+LLHE++ LSSELR SA+ +SS+ RL+AADNA+A M T+G+ GV AG A ARF AARR RR D+ + F
Sbjct: 1 MTQRLKLLHEEKTALSSELRTLSAKGSSSSTVRLVAADNAMAAMVTSGIIGVFAGGALARFLAARRGRSRLSRRQQDKDKDRHF 84
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig98.17135.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 6.92e-13 / Id = 53.57 Sequence D8LJU1_ECTSI
Match Name E-value Identity Description
D8LJU1_ECTSI 6.920e-13 53.57 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category signal anchor
Ec32 ortholog description expressed unknown protein
Ec32 ortholog Ec-23_000120.1
Exons 3
Model size 1480
Cds size 333
Stop 1
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930843.0502274-UTR-C-linearis_contig98:481358..481427 1622930843.0502274-UTR-C-linearis_contig98:481358..481427 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig98 481359..481427 +
1690881278.1147726-UTR-C-linearis_contig98:481358..481427 1690881278.1147726-UTR-C-linearis_contig98:481358..481427 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig98 481359..481427 +
1622930843.1196153-UTR-C-linearis_contig98:483224..484302 1622930843.1196153-UTR-C-linearis_contig98:483224..484302 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig98 483225..484302 +
1690881278.1696036-UTR-C-linearis_contig98:483224..484302 1690881278.1696036-UTR-C-linearis_contig98:483224..484302 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig98 483225..484302 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930843.0687342-CDS-C-linearis_contig98:481427..481461 1622930843.0687342-CDS-C-linearis_contig98:481427..481461 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 481428..481461 +
1690881278.130782-CDS-C-linearis_contig98:481427..481461 1690881278.130782-CDS-C-linearis_contig98:481427..481461 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 481428..481461 +
1622930843.0833673-CDS-C-linearis_contig98:482171..482283 1622930843.0833673-CDS-C-linearis_contig98:482171..482283 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 482172..482283 +
1690881278.1430628-CDS-C-linearis_contig98:482171..482283 1690881278.1430628-CDS-C-linearis_contig98:482171..482283 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 482172..482283 +
1622930843.1031432-CDS-C-linearis_contig98:483037..483224 1622930843.1031432-CDS-C-linearis_contig98:483037..483224 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 483038..483224 +
1690881278.1543627-CDS-C-linearis_contig98:483037..483224 1690881278.1543627-CDS-C-linearis_contig98:483037..483224 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 483038..483224 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig98.17135.1
>prot_C-linearis_contig98.17135.1 ID=prot_C-linearis_contig98.17135.1|Name=mRNA_C-linearis_contig98.17135.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=111bp
MELEQRDAEAEALCHGMTERLRLLHEKRAILSSELREFSARSGASSSERL IAADNAVAVMATAGLTGVLAGVAAARFFAARRTNRSRPRRGGGVDETKRF DWPPPKAPSS* back to top mRNA from alignment at C-linearis_contig98:481359..484302+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig98.17135.1 ID=mRNA_C-linearis_contig98.17135.1|Name=mRNA_C-linearis_contig98.17135.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2944bp|location=Sequence derived from alignment at C-linearis_contig98:481359..484302+ (Chordaria linearis ClinC8C monoicous)GGTTCGTTCCTACTCGCACCTTCCCGTTCCGCGACCAACAATTTTTTGAC
GTCAGGTGAGGTTGGCACC ATGGAACTGGAGCAGCGAGATGCAGAGGCCG
AAG GTGTGTGGGGGGTGTGTTTTCTCTCTCGGTGAGAGATTGAAAAAACA
AAAGAGCGGTGTTATATTTTTTCGAGAACGCGGTCCATTGCTCTGCGTAG
ATAGGTCTCCGTCCTCTCGCCTACCGGGCGATCCAAGGTTGTCGTGTGGA
CCTTAATCTTTACCGGGGATAGCGAGGATGCTGTGAGTGTTTCTTAGAAG
CTTTGCTTGTTCAGCGCACCCCACCCTACCCGGCCCTGCTCTAAACCGAT
TTCTACTGATCTGTTGCTGTAAGATGAGCTGGCTCTATTGTATAAAGGGA
GATTTGAGATTTGAGATTTGAAAGTGTTGAATTGTTCACACTGTGCGCAC
ACATCCACCACTGCATATTTTCCCTGGTTCTGACGGCTGTTCCCTTCTCC
TTCCATCTCCACACCCCTCCGACGTTTTCCGACAGTAGTTGAGCGCCTTA
GACCAAACACGATGCAGGTCGTATTTTAGGCATTCAAATCATGTTTCAGG
GGCGCTCGTTGTCACGTCCTCACACACGGATTCTCCGAGCGCCATCATCG
CTGACCCTGTGAAGAGAAGACTTGCCTGCTGGAAAAAATAGCTTTATCCT
TGTCAACCATTCGAACACTCACGATGTACTACTGTGGATAACGGGCCGTT
CGTTGTTCCGCGTTCGCTCTTCGTGTCTAACGCTAACCCACATTTCTCAC
CGTTCGCCGTCAGCTTTGTGTCATGGCATGACTGAGCGTCTAAGGCTGCT
CCATGAGAAGAGGGCCATCCTCTCGTCCGAGCTCAGGGAGTTTTCCGCGA
GGAGTGGGGCGTCATCCTCAGAGAG GTGAGTTTTGTCGTCGTAGAAATTG
GTTCGCTGCTGCAAAGCAACAGAACACCCAAATAAATCTGTTCGGTGGAC
TTGTTTAGTCGTGACGCACTGGGGGGCCTTGACTATGGTGGGTGCTGCTG
CCTGTGCCTCATCGTCGGCACGAGGGCACCCTTTGCAGTTGTGTCGAGAT
GATAGACCACGCGAAATGATGTCTATCATTTGCCGTTAGGTTCAAGAGAC
GATGGTACCTGCGATACGATCGCCCCTCGCCGACATCGCATAGAAGATAT
GAGCAGATGCACGGCCGATGCGCTTCTCACAGACTCGTATCTTGACGCGA
TAGCTAAAGTTCACCTACGCTGCACTTCTGATTGTGCTCACAATAGAGTA
TGCGGAAGAGATACAGGAAAGTGTCGGCAGTAGAGGCGCTTTAGCAGCTG
GACACAGAGTATATCCAGCGGCTGCGCCATAGAGAGGTTGTTTAAAGAAG
TGTGACTTTCCAGCAAATACATGAGTACCTAAGCCGCGAGGCAAGCCGGT
GGCATCGCGGGCGGGGGGGGGTACTTGCTTGCCCGGGGCATCCCATCGAG
GCGGAACATGGTTTCCACCCCTGCATGGTGCTACAAACACCACAACGTTC
GGGAGCGCTTGACGCCTTTTGGTTGACCTTTTTCGTTGCAAAAATCTATT
GTTGCCGTGTATAGATACATAGCCTTGCGCCCCTCGGAAAAATTCAACTG
GCGCGGCGTCCGCCGACTCGGGGGCACAGGTTAATCGCTGCAGACAACGC
CGTTGCCGTGATGGCGACTGCCGGGCTGACGGGTGTGCTGGCAGGAGTGG
CCGCTGCGAGATTCTTCGCCGCGAGAAGAACGAACCGATCAAGACCAAGA
CGAGGGGGAGGCGTGGACGAGACGAAGAGATTTGACTGGCCACCACCCAA
AGCCCCGTCTTCCTGA CAGCCCCGGTCCCGACTCGGAAGCATATTCTTCA
CGTACACACGTATATACCACCAGCTTCTGACAAGAAACGGGCGTTAGGCA
GAGGCTCAATTTCTCATGAAGACGCCATGACGCCGGGAGACCTCGACAGT
ATGGTACACGACAGGGTCGAGTACTTCGTCGCGGTCAATGAGGCTGGCTT
GGCGCTTGCCTGTCTCTCACTGTAGATATTTCACAGCGATCTCGGCCGAT
GGCAAAAAAAGCGTTGGTGGGCGTGTACACTATAGTGAATTCGGAAGAAG
AGGCGTTTCGGGTTTTTCGAGCTTTTCGATCGACACTCAGGATTTGACTG
CGCTTACGTTCTACTTCTCTCTGCTACCTGTTGTTTTGCCAGATGATCAG
TTGGAGTTGGCAGGTTTCCTTGAGAAGTTCAAAGCGTGCCGGGAAACCAT
GCTATCCCGTTTGTACTGCCACGAAAAATGGTAAGGATGTGACCCTTGGG
AATTACGCATGTACAGCAGTAGTCTACATGGACTTTTCGCTTGATGCAGT
CCAATAGAAGAAAATACGCTCATGCGGCTGCGGCCGCAGTGCGTCGAAAA
TTGCGGTTTTGTTACCCTTGCCTCATGGAAAATGGCAGGGACGTTAAGAC
TAGAGCAGATGCTGTTTGGATAGTAGGCTAGGGGGCGGCGGAAAAACTCA
ATCGGAGCGGTTTCAGTGGACCTCAAGTTCCAAAGCTGTTGGTTCAACAG
GCGTTGAGTAGACACTACAATTGCTGCAAGTACCCTCGGATTCCCCGATT
TCCCCGGGTTCATGGCAGGAGTGTCTCGTCATGGGGTTCTATGCGTAAAG
CACAAGCGAAAAGAGGATGCACCCATCACTGTCACTAATCCGAAGAAGCG
CATGCACGAAGCCAGCAGACCAACGGATGTGAGTCTGAAGCCTTGCCCGC
TCGCCGCTTTGTTCGCCGGAGGAAAAACATTGCCGGCGTCGCCCTCGCTC
ATCCTTCATCGCTGCCGTCGCCGCCACCCAGCTCGCCATTAATTTCGTCT
CTTGGGCGCTCTTCCGCACCTACTACCACCCCGCCGCCCCACCC back to top Coding sequence (CDS) from alignment at C-linearis_contig98:481359..484302+
>mRNA_C-linearis_contig98.17135.1 ID=mRNA_C-linearis_contig98.17135.1|Name=mRNA_C-linearis_contig98.17135.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at C-linearis_contig98:481359..484302+ (Chordaria linearis ClinC8C monoicous) ATGGAACTGGAGCAGCGAGATGCAGAGGCCGAAGATGGAACTGGAGCAGC GAGATGCAGAGGCCGAAGCTTTGTGTCATGGCATGACTGAGCGTCTAAGG CTGCTCCATGAGAAGAGGGCCATCCTCTCGTCCGAGCTCAGGGAGTTTTC CGCGAGGAGTGGGGCGTCATCCTCAGAGAGCTTTGTGTCATGGCATGACT GAGCGTCTAAGGCTGCTCCATGAGAAGAGGGCCATCCTCTCGTCCGAGCT CAGGGAGTTTTCCGCGAGGAGTGGGGCGTCATCCTCAGAGAGGTTAATCG CTGCAGACAACGCCGTTGCCGTGATGGCGACTGCCGGGCTGACGGGTGTG CTGGCAGGAGTGGCCGCTGCGAGATTCTTCGCCGCGAGAAGAACGAACCG ATCAAGACCAAGACGAGGGGGAGGCGTGGACGAGACGAAGAGATTTGACT GGCCACCACCCAAAGCCCCGTCTTCCTGAGTTAATCGCTGCAGACAACGC CGTTGCCGTGATGGCGACTGCCGGGCTGACGGGTGTGCTGGCAGGAGTGG CCGCTGCGAGATTCTTCGCCGCGAGAAGAACGAACCGATCAAGACCAAGA CGAGGGGGAGGCGTGGACGAGACGAAGAGATTTGACTGGCCACCACCCAA AGCCCCGTCTTCCTGA back to top