prot_C-linearis_contig97.17075.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig97.17075.1
Unique Nameprot_C-linearis_contig97.17075.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length246
Homology
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match: A0A6H5JKJ0_9PHAE (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ0_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 2.760e-75
Identity = 152/192 (79.17%), Postives = 158/192 (82.29%), Query Frame = 0
Query:   64 NTPPRIGVHPPTPPPPGQ----MMAYPQQHPQQHPKXXXXXXXXX------RMGPPGMTFQHPHPXXXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQDLS 245
            N PPR   HPP P PPGQ    +M YPQ        XXXXXXXXX      RMG PGM FQHP PXXXXXX  AFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFV D+FGDI+LGLYLVRGDALVLMGELD   EETPRL++VSADEIIEAQQEASAE+RQDAKLDWLFQDLS
Sbjct:   58 NPPPR--THPPNPYPPGQQQQQVMVYPQHXXXXXXXXXXXXXXXXXXXXXXRMGLPGMGFQHPLPXXXXXX--AFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEDRQDAKLDWLFQDLS 245          
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match: D8LL00_ECTSI (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL00_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 4.330e-74
Identity = 127/140 (90.71%), Postives = 131/140 (93.57%), Query Frame = 0
Query:  106 MGPPGMTFQHPHPXXXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQDLS 245
            MG PGM FQHP PXXXXXX  AFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFV D+FGDI+LGLYLVRGDALVLMGELD   EETPRL++VSADEIIEAQQEASAEERQDAKLDWLFQDLS
Sbjct:    1 MGLPGMGFQHPVPXXXXXX--AFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 138          
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match: A0A835ZG91_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG91_9STRA)

HSP 1 Score: 147 bits (372), Expect = 2.750e-40
Identity = 78/122 (63.93%), Postives = 96/122 (78.69%), Query Frame = 0
Query:  127 AFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALEETPR-----LKKVSADEIIEAQQEASAEERQDAKLDWLFQD 243
            +FFPG+ASL EQLDK VMVVLRDGRHLVG+MRSYDQFSNIVLEDTHERHFVG ++GDI LGLY+VRGD++VL+GE+ A            LK+V+ADEI++AQQE+  +     K++W F D
Sbjct:  116 SFFPGAASLHEQLDKVVMVVLRDGRHLVGLMRSYDQFSNIVLEDTHERHFVGALYGDIPLGLYIVRGDSVVLLGEVAAEXXXXXXXXXALLKRVTADEILQAQQESDVDP---FKVEWDFGD 234          
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match: K3WSU0_GLOUD (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSU0_GLOUD)

HSP 1 Score: 130 bits (327), Expect = 5.900e-35
Identity = 64/115 (55.65%), Postives = 86/115 (74.78%), Query Frame = 0
Query:  128 FFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALE-ETPRLKKVSADEIIEAQQEASAEERQDAKLDWLF 241
            +FPGS SL EQLDK+++VVLRDGRHLVG +RS+DQFSNI+LEDT+ERH    MF DI LGL ++RGD +VL+GELD   E + P +K+ S +EI+EA++  +A+     +  W F
Sbjct:    4 YFPGSISLIEQLDKKILVVLRDGRHLVGYIRSFDQFSNIILEDTYERHVADGMFCDIELGLNIIRGDNIVLLGELDEDKERDQPHMKRASIEEILEAEERLNAKGAASVREQWDF 118          
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match: A0A7S2XVC4_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVC4_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.660e-33
Identity = 66/115 (57.39%), Postives = 90/115 (78.26%), Query Frame = 0
Query:  128 FFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALEETPRL-KKVSADEIIEAQQEASAEERQDAKLDWLF 241
            FF G  SL EQLDK+++VVLRDGRHLVGV+RS+DQFSN+V+E+THERH V  +FGDI LGLY+VRGD +VL+GE+D   E + +  ++VSA+EI+ AQ+  + E++   K+ W F
Sbjct:    4 FFAGGMSLVEQLDKKILVVLRDGRHLVGVLRSFDQFSNMVMENTHERHVVEGIFGDIPLGLYIVRGDNVVLLGEVDEEKESSSQHPRRVSAEEILHAQR--NTEDK--TKVAWDF 114          
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match: H3GH42_PHYRM (U6 snRNA-associated Sm-like protein LSm1 n=43 Tax=Peronosporaceae TaxID=4777 RepID=H3GH42_PHYRM)

HSP 1 Score: 126 bits (316), Expect = 2.560e-33
Identity = 59/115 (51.30%), Postives = 87/115 (75.65%), Query Frame = 0
Query:  129 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALE-ETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQ 242
            FPG++SL +QLDK+V++VLRDGRHLVG +RS+DQ+SNI+LEDT ERH  G +F DI LGL ++RGD +VL+GELD+  E + P +K+V  +E++EA+++ +       +  W F+
Sbjct:    5 FPGNSSLIQQLDKQVLMVLRDGRHLVGYLRSFDQYSNIILEDTFERHVAGGLFCDIELGLNIIRGDNIVLLGELDSEKERDQPHMKRVELEEVLEAEEQLNEAGNTSVRQQWDFE 119          
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match: A0A6V1WH12_HETAK (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WH12_HETAK)

HSP 1 Score: 124 bits (311), Expect = 1.320e-32
Identity = 64/112 (57.14%), Postives = 85/112 (75.89%), Query Frame = 0
Query:  130 PGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLF 241
            PG   L EQLDKR+++VL+DGRHL+G +RS+DQFSN+V+E+T ERH V   +GDI LGLYLVRGDA+VL+GE+D A  E   L++VSADEI+E ++E  +     A+ DW F
Sbjct:    7 PGIMGLVEQLDKRILIVLQDGRHLIGTLRSFDQFSNVVIENTFERHVVDGCYGDIPLGLYLVRGDAVVLLGEVDDAGHEGI-LRRVSADEILELEREKESR----ARDDWDF 113          
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match: A0A4D9CWQ3_9STRA (Sm domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWQ3_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.370e-32
Identity = 72/135 (53.33%), Postives = 96/135 (71.11%), Query Frame = 0
Query:  108 PPGMTFQHPHPXXXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQ 242
            PPG  +  P P         + PG+ASL EQLD+RV+VVLRDGR+LVGV+RS+DQFSN+VLEDT+ERH V   +GD+ LGLYLVRGDA+VL+GE++A   E   L+KV+ +EI+E  Q +       AK++W F+
Sbjct:  221 PPGPHYMLP-PRPFVAVLPDYLPGAASLVEQLDRRVLVVLRDGRNLVGVLRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAE-REGKSLEKVTTEEILELLQGSG---EAGAKVEWDFE 350          
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match: A0A0P1A9M0_PLAHL (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9M0_PLAHL)

HSP 1 Score: 123 bits (309), Expect = 3.150e-32
Identity = 60/113 (53.10%), Postives = 86/113 (76.11%), Query Frame = 0
Query:  129 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALE-ETPRLKKVSADEIIEAQQEASAEERQDAKLDWL 240
            FPG++SL +QLDK+V++VLRDGRHLVG +RS+DQFSNI+LEDT+ERH  G +F DI LGL ++RG  +VL+GELD+  E + P +K+V  +E++EA++  + E      L +L
Sbjct:    5 FPGNSSLIQQLDKQVLMVLRDGRHLVGNLRSFDQFSNIILEDTYERHVAGGLFCDIELGLNIIRGGNIVLLGELDSDKERDQPHMKRVKLEEVLEAEERLNEEGNTSLSLSFL 117          
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match: A0A7S2CG66_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG66_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.240e-32
Identity = 61/127 (48.03%), Postives = 86/127 (67.72%), Query Frame = 0
Query:  116 PHPXXXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQ 242
            P P           PG+ASL +QLDKR+++VLRDGRHLVG++RS+DQFSN+VLEDTHERH    +  D+ALGL++VRGD +VL+GELD   E +  L     D ++EA++ ++       K++W F+
Sbjct:    2 PPPPMEPTQMGLLLPGAASLVDQLDKRILIVLRDGRHLVGILRSFDQFSNMVLEDTHERHVANGLRSDMALGLFIVRGDNIVLLGELDPEKEASSGLIDAEPDVVLEAERNSAF-----TKVEWDFE 123          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKJ0_9PHAE2.760e-7579.17U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E... [more]
D8LL00_ECTSI4.330e-7490.71U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E... [more]
A0A835ZG91_9STRA2.750e-4063.93U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=T... [more]
K3WSU0_GLOUD5.900e-3555.65U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=G... [more]
A0A7S2XVC4_9STRA1.660e-3357.39U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=F... [more]
H3GH42_PHYRM2.560e-3351.30U6 snRNA-associated Sm-like protein LSm1 n=43 Tax=... [more]
A0A6V1WH12_HETAK1.320e-3257.14U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=H... [more]
A0A4D9CWQ3_9STRA1.370e-3253.33Sm domain-containing protein n=2 Tax=Monodopsidace... [more]
A0A0P1A9M0_PLAHL3.150e-3253.10U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=P... [more]
A0A7S2CG66_9STRA3.240e-3248.03U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=D... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 133..201
e-value: 3.4E-17
score: 73.1
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 135..200
e-value: 3.5E-15
score: 55.4
NoneNo IPR availableGENE3D2.30.30.100coord: 132..239
e-value: 1.1E-30
score: 108.0
NoneNo IPR availablePANTHERPTHR15588:SF8U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1coord: 127..235
NoneNo IPR availablePANTHERPTHR15588LSM1coord: 127..235
NoneNo IPR availableSUPERFAMILY81995beta-sandwich domain of Sec23/24coord: 61..127
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 133..206

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:211803..213638 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17075.1mRNA_C-linearis_contig97.17075.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig97 211678..214437 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig97.17075.1 ID=prot_C-linearis_contig97.17075.1|Name=mRNA_C-linearis_contig97.17075.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=246bp
MADTPKERASRAQKAQAQQPKARAAPRTQGPASGGPRPARGTSDGGAGAG
AGAGASAVAAHSHNTPPRIGVHPPTPPPPGQMMAYPQQHPQQHPKHPQHP
QYPQRMGPPGMTFQHPHPPPPPPPPPAFFPGSASLFEQLDKRVMVVLRDG
RHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMG
ELDAALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQDLS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf