Homology
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match:
A0A6H5JKJ0_9PHAE (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ0_9PHAE)
HSP 1 Score: 237 bits (605), Expect = 2.760e-75
Identity = 152/192 (79.17%), Postives = 158/192 (82.29%), Query Frame = 0
Query: 64 NTPPRIGVHPPTPPPPGQ----MMAYPQQHPQQHPKXXXXXXXXX------RMGPPGMTFQHPHPXXXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQDLS 245
N PPR HPP P PPGQ +M YPQ XXXXXXXXX RMG PGM FQHP PXXXXXX AFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFV D+FGDI+LGLYLVRGDALVLMGELD EETPRL++VSADEIIEAQQEASAE+RQDAKLDWLFQDLS
Sbjct: 58 NPPPR--THPPNPYPPGQQQQQVMVYPQHXXXXXXXXXXXXXXXXXXXXXXRMGLPGMGFQHPLPXXXXXX--AFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEDRQDAKLDWLFQDLS 245
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match:
D8LL00_ECTSI (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL00_ECTSI)
HSP 1 Score: 230 bits (587), Expect = 4.330e-74
Identity = 127/140 (90.71%), Postives = 131/140 (93.57%), Query Frame = 0
Query: 106 MGPPGMTFQHPHPXXXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQDLS 245
MG PGM FQHP PXXXXXX AFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFV D+FGDI+LGLYLVRGDALVLMGELD EETPRL++VSADEIIEAQQEASAEERQDAKLDWLFQDLS
Sbjct: 1 MGLPGMGFQHPVPXXXXXX--AFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 138
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match:
A0A835ZG91_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG91_9STRA)
HSP 1 Score: 147 bits (372), Expect = 2.750e-40
Identity = 78/122 (63.93%), Postives = 96/122 (78.69%), Query Frame = 0
Query: 127 AFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALEETPR-----LKKVSADEIIEAQQEASAEERQDAKLDWLFQD 243
+FFPG+ASL EQLDK VMVVLRDGRHLVG+MRSYDQFSNIVLEDTHERHFVG ++GDI LGLY+VRGD++VL+GE+ A LK+V+ADEI++AQQE+ + K++W F D
Sbjct: 116 SFFPGAASLHEQLDKVVMVVLRDGRHLVGLMRSYDQFSNIVLEDTHERHFVGALYGDIPLGLYIVRGDSVVLLGEVAAEXXXXXXXXXALLKRVTADEILQAQQESDVDP---FKVEWDFGD 234
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match:
K3WSU0_GLOUD (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSU0_GLOUD)
HSP 1 Score: 130 bits (327), Expect = 5.900e-35
Identity = 64/115 (55.65%), Postives = 86/115 (74.78%), Query Frame = 0
Query: 128 FFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALE-ETPRLKKVSADEIIEAQQEASAEERQDAKLDWLF 241
+FPGS SL EQLDK+++VVLRDGRHLVG +RS+DQFSNI+LEDT+ERH MF DI LGL ++RGD +VL+GELD E + P +K+ S +EI+EA++ +A+ + W F
Sbjct: 4 YFPGSISLIEQLDKKILVVLRDGRHLVGYIRSFDQFSNIILEDTYERHVADGMFCDIELGLNIIRGDNIVLLGELDEDKERDQPHMKRASIEEILEAEERLNAKGAASVREQWDF 118
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match:
A0A7S2XVC4_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVC4_9STRA)
HSP 1 Score: 126 bits (317), Expect = 1.660e-33
Identity = 66/115 (57.39%), Postives = 90/115 (78.26%), Query Frame = 0
Query: 128 FFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALEETPRL-KKVSADEIIEAQQEASAEERQDAKLDWLF 241
FF G SL EQLDK+++VVLRDGRHLVGV+RS+DQFSN+V+E+THERH V +FGDI LGLY+VRGD +VL+GE+D E + + ++VSA+EI+ AQ+ + E++ K+ W F
Sbjct: 4 FFAGGMSLVEQLDKKILVVLRDGRHLVGVLRSFDQFSNMVMENTHERHVVEGIFGDIPLGLYIVRGDNVVLLGEVDEEKESSSQHPRRVSAEEILHAQR--NTEDK--TKVAWDF 114
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match:
H3GH42_PHYRM (U6 snRNA-associated Sm-like protein LSm1 n=43 Tax=Peronosporaceae TaxID=4777 RepID=H3GH42_PHYRM)
HSP 1 Score: 126 bits (316), Expect = 2.560e-33
Identity = 59/115 (51.30%), Postives = 87/115 (75.65%), Query Frame = 0
Query: 129 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALE-ETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQ 242
FPG++SL +QLDK+V++VLRDGRHLVG +RS+DQ+SNI+LEDT ERH G +F DI LGL ++RGD +VL+GELD+ E + P +K+V +E++EA+++ + + W F+
Sbjct: 5 FPGNSSLIQQLDKQVLMVLRDGRHLVGYLRSFDQYSNIILEDTFERHVAGGLFCDIELGLNIIRGDNIVLLGELDSEKERDQPHMKRVELEEVLEAEEQLNEAGNTSVRQQWDFE 119
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match:
A0A6V1WH12_HETAK (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WH12_HETAK)
HSP 1 Score: 124 bits (311), Expect = 1.320e-32
Identity = 64/112 (57.14%), Postives = 85/112 (75.89%), Query Frame = 0
Query: 130 PGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLF 241
PG L EQLDKR+++VL+DGRHL+G +RS+DQFSN+V+E+T ERH V +GDI LGLYLVRGDA+VL+GE+D A E L++VSADEI+E ++E + A+ DW F
Sbjct: 7 PGIMGLVEQLDKRILIVLQDGRHLIGTLRSFDQFSNVVIENTFERHVVDGCYGDIPLGLYLVRGDAVVLLGEVDDAGHEGI-LRRVSADEILELEREKESR----ARDDWDF 113
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match:
A0A4D9CWQ3_9STRA (Sm domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWQ3_9STRA)
HSP 1 Score: 130 bits (328), Expect = 1.370e-32
Identity = 72/135 (53.33%), Postives = 96/135 (71.11%), Query Frame = 0
Query: 108 PPGMTFQHPHPXXXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQ 242
PPG + P P + PG+ASL EQLD+RV+VVLRDGR+LVGV+RS+DQFSN+VLEDT+ERH V +GD+ LGLYLVRGDA+VL+GE++A E L+KV+ +EI+E Q + AK++W F+
Sbjct: 221 PPGPHYMLP-PRPFVAVLPDYLPGAASLVEQLDRRVLVVLRDGRNLVGVLRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAE-REGKSLEKVTTEEILELLQGSG---EAGAKVEWDFE 350
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match:
A0A0P1A9M0_PLAHL (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9M0_PLAHL)
HSP 1 Score: 123 bits (309), Expect = 3.150e-32
Identity = 60/113 (53.10%), Postives = 86/113 (76.11%), Query Frame = 0
Query: 129 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALE-ETPRLKKVSADEIIEAQQEASAEERQDAKLDWL 240
FPG++SL +QLDK+V++VLRDGRHLVG +RS+DQFSNI+LEDT+ERH G +F DI LGL ++RG +VL+GELD+ E + P +K+V +E++EA++ + E L +L
Sbjct: 5 FPGNSSLIQQLDKQVLMVLRDGRHLVGNLRSFDQFSNIILEDTYERHVAGGLFCDIELGLNIIRGGNIVLLGELDSDKERDQPHMKRVKLEEVLEAEERLNEEGNTSLSLSFL 117
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match:
A0A7S2CG66_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG66_9STRA)
HSP 1 Score: 123 bits (309), Expect = 3.240e-32
Identity = 61/127 (48.03%), Postives = 86/127 (67.72%), Query Frame = 0
Query: 116 PHPXXXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQ 242
P P PG+ASL +QLDKR+++VLRDGRHLVG++RS+DQFSN+VLEDTHERH + D+ALGL++VRGD +VL+GELD E + L D ++EA++ ++ K++W F+
Sbjct: 2 PPPPMEPTQMGLLLPGAASLVDQLDKRILIVLRDGRHLVGILRSFDQFSNMVLEDTHERHVANGLRSDMALGLFIVRGDNIVLLGELDPEKEASSGLIDAEPDVVLEAERNSAF-----TKVEWDFE 123
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Analysis Date: 2022-09-16 (
Diamond blastp: OGS1.0 vs UniRef90 )
Total hits: 25
M A D T P K E R A S R A Q K A Q A Q Q P K A R A A P R T Q G P A S G G P R P A R G T S D G G A G A G A G A G A S A V A A H S H N T P P R I G V H P P T P P P P G Q M M A Y P Q Q H P Q Q H P K H P Q H P Q Y P Q R M G P P G M T F Q H P H P P P P P P P P P A F F P G S A S L F E Q L D K R V M V V L R D G R H L V G V M R S Y D Q F S N I V L E D T H E R H F V G D M F G D I A L G L Y L V R G D A L V L M G E L D A A L E E T P R L K K V S A D E I I E A Q Q E A S A E E R Q D A K L D W L F Q D L S * 20 40 60 80 100 120 140 160 180 200 220 240 Expect = 2.76e-75 / Id = 79.17 Expect = 4.33e-74 / Id = 90.71 Expect = 2.75e-40 / Id = 63.93 Expect = 5.90e-35 / Id = 55.65 Expect = 1.66e-33 / Id = 57.39 Expect = 2.56e-33 / Id = 51.30 Expect = 1.32e-32 / Id = 57.14 Expect = 1.37e-32 / Id = 53.33 Expect = 3.15e-32 / Id = 53.10 Expect = 3.24e-32 / Id = 48.03 Sequence A0A6H5JKJ0_9PHAE D8LL00_ECTSI A0A835ZG91_9STRA K3WSU0_GLOUD A0A7S2XVC4_9STRA H3GH42_PHYRM A0A6V1WH12_HETAK A0A4D9CWQ3_9STRA A0A0P1A9M0_PLAHL A0A7S2CG66_9STRA Pages
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