mRNA_C-linearis_contig99.17167.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Match: D7G7U8_ECTSI (Thylakoid lumenal 15 kDa protein, chloroplast (P15) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7U8_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 7.880e-73
Identity = 163/213 (76.53%), Postives = 179/213 (84.04%), Query Frame = 1

Query:  178 SMSLRGNAAKCFPAILLGVALATSPLSVPLLDNHAVNSNGVLGASPVFADEDKGMSSVSDSKLSIGAASTGDKGARKTVTRGVNIENADYHGKDLSGVSFQQSLVRGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVTEAYISGATKMEPANVEGADFTDTFLRKDQVKYLCELDSTKGTNPVTGVDTRDSLGCP 816
            +M+L  +AA+C PA+LLGV L TS    PLLD+ A ++  VLGASPVFAD DKGMSSVSDSKLS+GAASTGDKGARKTVTRGVNIENADYH KDLS VSFQQSLVRGTN              XXXXXXXXXXXXXXXXXXXXXXXXXXXXX +VTEAY+SGATKMEPA +EGADFTDTFLRKDQV+YLC L++ KGTNPV+GVDTRDSLGCP
Sbjct:   38 TMNLFNDAARCVPAVLLGVTLTTS---APLLDSPAAHT-AVLGASPVFAD-DKGMSSVSDSKLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLETAKGTNPVSGVDTRDSLGCP 245

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BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Match: A0A835YUD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUD1_9STRA)

HSP 1 Score: 153 bits (387), Expect = 5.800e-40
Identity = 107/160 (66.88%), Postives = 120/160 (75.00%), Query Frame = 1

Query:  334 KGMSSVSDSKLSIGAASTGDKGARKTVTRGVNIENADYHGKDLSGVSFQQSLVRGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVTEAYISGATKMEPANVEGADFTDTFLRKDQVKYLCELDSTKGTNPVTGVDTRDSLGC 813
            +G SSVSD+K+  GAAST D G+RK +TRGVN+ENAD+HGKD+SGVSFQQSLVRGTN                   XXXXXXXXXXXXXXXXXXXXXXXX      Y+SGATK EP ++EGADFTDTFLRKDQ+ YLC +   KGTNPVTGVDT DSL C
Sbjct:   75 EGASSVSDTKMLSGAASTLDTGSRKIITRGVNLENADFHGKDMSGVSFQQSLVRGTNFASSKLIGSGFFDADLSNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVSGATKFEPKDIEGADFTDTFLRKDQIMYLCAI--AKGTNPVTGVDTADSLSC 232

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BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Match: A0A7S2CVZ3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CVZ3_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.130e-29
Identity = 102/196 (52.04%), Postives = 127/196 (64.80%), Query Frame = 1

Query:  235 ALATSPLSVPLLDNHAVNSNGVLGASPVFADEDKGMSSVSDSKLSIGAAST--GDKGARKTVTRGVNIENADYHGKDLSGVSFQQSLVRGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVTEAYISGATKMEPANVEGADFTDTFLRKDQVKYLCELDSTKGTNPVTGVDTRDSLGCP 816
            A+++  +  P     A+ +  +L A+P FA+ D G S+V ++K+  G AST    +GARKT+TRGV ++ A++ G+DL+GVSFQQS +RG                   XXXXXXXXXXXXXXXXXXXXXXXXXX         GAT  + A +EGADFTDTFLRKDQ K LC   + KGTNP TGVDTRDSL CP
Sbjct:   15 AVSSMEIKAPAAAASALAAALLLSATPAFAESDGGASNVENTKIMNGGASTIVNQRGARKTITRGVQLDKANFAGEDLTGVSFQQSQIRGGVFEKTKLLGASFFDATLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATSFKDAKIEGADFTDTFLRKDQQKELCA--TAKGTNPTTGVDTRDSLMCP 208

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BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Match: A0A7S1BVJ1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BVJ1_9STRA)

HSP 1 Score: 120 bits (300), Expect = 6.730e-28
Identity = 110/218 (50.46%), Postives = 132/218 (60.55%), Query Frame = 1

Query:  163 PSMATSMSLRGNAAKCFPAILLGVALATSPLSVPLLDNHAVNSNGVLGASPVFADEDKGMSSVSDSKLSIGAASTGDKGARKTVTRGVNIENADYHGKDLSGVSFQQSLVRGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVTEAYISGATKMEPA-NVEGADFTDTFLRKDQVKYLCELDSTKGTNPVTGVDTRDSLGC 813
            PS A S+  R  AA    A+LL  +LA SPL     DN A +                    VS+ K++ G AST   G   T+TRGVN++ AD+ G+ L GV+FQQS+VR  NXXXXXXXXXXXXXXXXXXXXXXXXXXXX               AVV EAY+ G T      ++EGADF+DT+LR DQ KYLCE  + KGTN VTG+DTR+SL C
Sbjct:    6 PSAAASLPDR--AASLAAALLLASSLALSPLPSSAADNGATD--------------------VSNQKITTGGASTLQSGRTITITRGVNLDRADFGGQKLKGVAFQQSIVRDANXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNLEMCQLNRANLRDAVVREAYVGGTTMFTGIKSIEGADFSDTYLRADQKKYLCEHPTAKGTNSVTGMDTRESLMC 201

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BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Match: A0A448ZI41_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZI41_9STRA)

HSP 1 Score: 120 bits (302), Expect = 8.040e-28
Identity = 87/168 (51.79%), Postives = 115/168 (68.45%), Query Frame = 1

Query:  313 PVFADEDKGMSSVSDSKLSIGAASTGDKGARKTVTRGVNIENADYHGKDLSGVSFQQSLVRGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVTEAYISGATKMEPA-NVEGADFTDTFLRKDQVKYLCELDSTKGTNPVTGVDTRDSLGC 813
            P FAD+  G ++ S++K++ G AST   G    +TRGVN++N+++ G++L GV+FQQS+VR +N     X XXXXXXXXXXXXXXXXXXX                  V+ E Y+SGAT  E   ++EG+D+++TFLRKDQ KYLCE  + KGTNPVTGVDTR+SL C
Sbjct:   68 PAFADQ--GATAASNAKITTGGASTLQSGRTIAITRGVNLDNSNFXGQNLKGVAFQQSIVRDSNFKGANXVXXXXXXXXXXXXXXXXXXXTLSNVEMAQFNRANLKNTVMKEVYVSGATLFEGVKSIEGSDWSETFLRKDQQKYLCEHPTAKGTNPVTGVDTRESLMC 233

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BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Match: A0A7S3L2E8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L2E8_9STRA)

HSP 1 Score: 119 bits (297), Expect = 5.020e-27
Identity = 111/180 (61.67%), Postives = 135/180 (75.00%), Query Frame = 1

Query:  280 AVNSNGVLGASPVFADEDKGMSSVSDSKLSIGAASTGDKGARKTVTRGVNIENADYHGKDLSGVSFQQSLVRGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVTEAYISGATKMEPA-NVEGADFTDTFLRKDQVKYLCELDSTKGTNPVTGVDTRDSLGCP 816
            AV   G+L   P  A  D G S  S++K++ G AST   G    +TRGVN++ +D+  ++L GV+FQQS+VR + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  A++ E Y+SGAT  E   ++EG+D+TDT LRKDQ KYLC   + KGTNPVTGVDTR+SL CP
Sbjct:   64 AVFLAGILALHPAMAAGDGGASVGSNAKITTGGASTLQSGRTIAITRGVNLDKSDFSNQNLKGVAFQQSIVRDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNAILKEMYVSGATLFEGVKDIEGSDWTDTELRKDQKKYLCNHPTAKGTNPVTGVDTRESLMCP 243

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BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Match: A0A7S1QSD0_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1QSD0_ALECA)

HSP 1 Score: 116 bits (291), Expect = 3.200e-26
Identity = 89/154 (57.79%), Postives = 108/154 (70.13%), Query Frame = 1

Query:  358 SKLSIGAASTG-DKGARKTVTRGVNIENADYHGKDLSGVSFQQSLVRGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVTEAYISGATKMEPANVEGADFTDTFLRKDQVKYLCELDSTKGTNPVTGVDTRDSLGCP 816
            SK+  G AST    G RK +TRG+N+E A+Y G+DLSGVSFQQS+VR   XXXXXXXXXXXXXXXXXXXXXXXXX                  A+ T+ Y++G T+MEP  ++GADFT T  RKDQ+ YLC++   +GTNPVT VDTR+SL CP
Sbjct:   89 SKIKAGGASTSAGLGTRKIITRGINLEKANYAGQDLSGVSFQQSIVREXXXXXXXXXXXXXXXXXXXXXXXXXXXMTQANLELARATDAIFTNAIATDMYVNGTTRMEPKRIDGADFTGTIFRKDQLNYLCKI--AEGTNPVTKVDTRESLMCP 240

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BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Match: A0A7S4HSJ0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HSJ0_9STRA)

HSP 1 Score: 115 bits (289), Expect = 8.640e-26
Identity = 97/213 (45.54%), Postives = 131/213 (61.50%), Query Frame = 1

Query:  178 SMSLRGNAAKCFPAILLGVALATSPLSVPLLDNHAVNSNGVLGASPVFADEDKGMSSVSDSKLSIGAASTGDKGARKTVTRGVNIENADYHGKDLSGVSFQQSLVRGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVTEAYISGATKMEPA-NVEGADFTDTFLRKDQVKYLCELDSTKGTNPVTGVDTRDSLGC 813
            ++  +  AA  F A+ +  A+A SP +                     A +D G S+ +++K++ G AST   G    +TRGVN++ +D+ G++L GV+FQQS+VR +NXXXXXXXXXXXXXXXXXXXXXXXXXX                 AV+ E Y+SGAT +    ++EG+D+TDT LR+DQ KYLC   + KGTNP TGVDTR+SL C
Sbjct:   61 ALKAKSAAASVFAALSIAAAVAFSPPAA-------------------IAADDTGASTAANAKITTGGASTLQSGRTIAITRGVNLDRSDFGGQNLKGVAFQQSIVRDSNXXXXXXXXXXXXXXXXXXXXXXXXXXTLANFEMAQFNRANLKNAVLREMYVSGATILTGVKDIEGSDWTDTMLRRDQTKYLCSHPTAKGTNPTTGVDTRESLMC 254

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BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Match: A0A7S3Y7I5_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Y7I5_9EUKA)

HSP 1 Score: 115 bits (288), Expect = 9.660e-26
Identity = 108/159 (67.92%), Postives = 129/159 (81.13%), Query Frame = 1

Query:  349 VSDSKLSIGAAST-GDKGARKT---VTRGVNIENADYHGKDLSGVSFQQSLVRGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVTEAYISGATKMEPANVEGADFTDTFLRKDQVKYLCELDSTKGTNPVTGVDTRDSLGC 813
             SDSK++ GAAST GDKG        TRGV ++ +D+ GKDLSGVSFQQS+VR TN XXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++ EAYISG+T +   N++ +D+TDTF+RKDQ++YLC++ S  GTNP TGV TR+SLGC
Sbjct:   90 ASDSKIAKGAASTSGDKGIAAQSGIATRGVILDYSDFSGKDLSGVSFQQSIVRKTNFXXXXXXXXXXFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINEAYISGSTVLRDINIKDSDWTDTFVRKDQLQYLCQIAS--GTNPTTGVGTRESLGC 246

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BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Match: A0A7S2TUI3_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TUI3_9EUKA)

HSP 1 Score: 115 bits (288), Expect = 1.010e-25
Identity = 108/159 (67.92%), Postives = 129/159 (81.13%), Query Frame = 1

Query:  349 VSDSKLSIGAAST-GDKGARKT---VTRGVNIENADYHGKDLSGVSFQQSLVRGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVTEAYISGATKMEPANVEGADFTDTFLRKDQVKYLCELDSTKGTNPVTGVDTRDSLGC 813
             SDSK++ GAAST GDKG        TRGV ++ +D+ GKDLSGVSFQQS+VR TN XXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++ EAYISG+T +   N++ +D+TDTF+RKDQ++YLC++ S  GTNP TGV TR+SLGC
Sbjct:   92 ASDSKIAKGAASTSGDKGIAAQSGIATRGVILDYSDFSGKDLSGVSFQQSIVRKTNFXXXXXXXXXXFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINEAYISGSTVLRDINIKDSDWTDTFVRKDQLQYLCQIAS--GTNPTTGVGTRESLGC 248

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot

BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

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POSITION

0


Match Name	E-value	Identity	Description
D7G7U8_ECTSI	7.880e-73	76.53	Thylakoid lumenal 15 kDa protein, chloroplast (P15...	[more]
A0A835YUD1_9STRA	5.800e-40	66.88	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S2CVZ3_9STRA	1.130e-29	52.04	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A7S1BVJ1_9STRA	6.730e-28	50.46	Hypothetical protein n=1 Tax=Corethron hystrix Tax...	[more]
A0A448ZI41_9STRA	8.040e-28	51.79	Uncharacterized protein n=1 Tax=Pseudo-nitzschia m...	[more]
A0A7S3L2E8_9STRA	5.020e-27	61.67	Hypothetical protein n=1 Tax=Amphora coffeiformis ...	[more]
A0A7S1QSD0_ALECA	3.200e-26	57.79	Hypothetical protein n=1 Tax=Alexandrium catenella...	[more]
A0A7S4HSJ0_9STRA	8.640e-26	45.54	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
A0A7S3Y7I5_9EUKA	9.660e-26	67.92	Hypothetical protein n=1 Tax=Lotharella globosa Ta...	[more]
A0A7S2TUI3_9EUKA	1.010e-25	67.92	Hypothetical protein n=1 Tax=Lotharella oceanica T...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	238.8
Seed ortholog evalue	2.7e-60
Seed eggNOG ortholog	2880.D7G7U8
Hectar predicted targeting category	chloroplast
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009543,GO:0009579,GO:0016020,GO:0031976,GO:0031977,GO:0031978,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.	Pentapeptide repeats (9 copies)
EggNOG OGs	2QQA1@2759,COG1357@1
Ec32 ortholog description	Thylakoid lumenal 15 kDa protein, chloroplast precursor (p15)
Ec32 ortholog	Ec-06_000240.1
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	7
Model size	1471
Cds size	759
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930849.4996796-UTR-C-linearis_contig99:294360..294420	1622930849.4996796-UTR-C-linearis_contig99:294360..294420	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig99 294361..294420 +
1690881281.375971-UTR-C-linearis_contig99:294360..294420	1690881281.375971-UTR-C-linearis_contig99:294360..294420	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig99 294361..294420 +
1622930849.6434295-UTR-C-linearis_contig99:299210..299862	1622930849.6434295-UTR-C-linearis_contig99:299210..299862	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig99 299211..299862 +
1690881281.467029-UTR-C-linearis_contig99:299210..299862	1690881281.467029-UTR-C-linearis_contig99:299210..299862	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig99 299211..299862 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930849.5310478-CDS-C-linearis_contig99:294420..294559	1622930849.5310478-CDS-C-linearis_contig99:294420..294559	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 294421..294559 +
1690881281.3899932-CDS-C-linearis_contig99:294420..294559	1690881281.3899932-CDS-C-linearis_contig99:294420..294559	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 294421..294559 +
1622930849.5492544-CDS-C-linearis_contig99:295807..296005	1622930849.5492544-CDS-C-linearis_contig99:295807..296005	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 295808..296005 +
1690881281.402858-CDS-C-linearis_contig99:295807..296005	1690881281.402858-CDS-C-linearis_contig99:295807..296005	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 295808..296005 +
1622930849.5627549-CDS-C-linearis_contig99:296515..296574	1622930849.5627549-CDS-C-linearis_contig99:296515..296574	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 296516..296574 +
1690881281.4129777-CDS-C-linearis_contig99:296515..296574	1690881281.4129777-CDS-C-linearis_contig99:296515..296574	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 296516..296574 +
1622930849.5779366-CDS-C-linearis_contig99:296979..297055	1622930849.5779366-CDS-C-linearis_contig99:296979..297055	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 296980..297055 +
1690881281.422796-CDS-C-linearis_contig99:296979..297055	1690881281.422796-CDS-C-linearis_contig99:296979..297055	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 296980..297055 +
1622930849.5902588-CDS-C-linearis_contig99:297891..297973	1622930849.5902588-CDS-C-linearis_contig99:297891..297973	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 297892..297973 +
1690881281.433843-CDS-C-linearis_contig99:297891..297973	1690881281.433843-CDS-C-linearis_contig99:297891..297973	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 297892..297973 +
1622930849.6057208-CDS-C-linearis_contig99:298510..298596	1622930849.6057208-CDS-C-linearis_contig99:298510..298596	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 298511..298596 +
1690881281.446664-CDS-C-linearis_contig99:298510..298596	1690881281.446664-CDS-C-linearis_contig99:298510..298596	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 298511..298596 +
1622930849.624244-CDS-C-linearis_contig99:299091..299210	1622930849.624244-CDS-C-linearis_contig99:299091..299210	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 299092..299210 +
1690881281.455525-CDS-C-linearis_contig99:299091..299210	1690881281.455525-CDS-C-linearis_contig99:299091..299210	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 299092..299210 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig99.17167.1	prot_C-linearis_contig99.17167.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig99 294421..299210 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig99:294361..299862+
coding sequence from alignment at C-linearis_contig99:294361..299862+

protein sequence of mRNA_C-linearis_contig99.17167.1

>prot_C-linearis_contig99.17167.1 ID=prot_C-linearis_contig99.17167.1|Name=mRNA_C-linearis_contig99.17167.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=253bp
MLSTARKSVVLLFAGASVANSFVVTSPLHLSTRPPSMATSMSLRGNAAKC
FPAILLGVALATSPLSVPLLDNHAVNSNGVLGASPVFADEDKGMSSVSDS
KLSIGAASTGDKGARKTVTRGVNIENADYHGKDLSGVSFQQSLVRGTNFK
GSKLVAAGFFDADLSNCNFESANMNQANLELANLSGANMKNAVVTEAYIS
GATKMEPANVEGADFTDTFLRKDQVKYLCELDSTKGTNPVTGVDTRDSLG
CP*

mRNA from alignment at C-linearis_contig99:294361..299862+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig99.17167.1 ID=mRNA_C-linearis_contig99.17167.1|Name=mRNA_C-linearis_contig99.17167.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5502bp|location=Sequence derived from alignment at C-linearis_contig99:294361..299862+ (Chordaria linearis ClinC8C monoicous)
GTTTGGGTTGAGCACTGCTCAACGCGAGCACAGCTGTTATCCTGGGACAT
ACACGGCGCGATGTTGTCTACTGCTAGAAAAAGCGTGGTGCTACTCTTTG
CAGGGGCATCAGTCGCAAATTCGTTCGTTGTGACCAGCCCATTGCACCTC
TCTACCCGTCCTCCCTCGATGGCAACATCAATGAGCCTTCGTGGTAACGG
TGGGTCAGAAGTTAGTAGGCACAGCAGTTCGCGTTTGCGTGCGGGTGTTC
ACTGCTGTGATGATATGCTGCTATGTATGTGTTCAGTATACTGTGAGTTT
CGAGCGCCGAAGGCCCTTGAGTCTCGATGTGCAGTGCTGTACGTGTCTTG
TGTTGTTGTGTGTGTCTTTGTTGTTTTTTTCATGTGTCATTTGTGTGTCT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCGTCCCATTTATTTTGG
CGACAGTCCCTTCCGATCAAGGCCAGACGTGTACTACACGTTGCGGTGTA
TTTAGAGTACTGCACTTGTTCGGTGCATTTTTCTGTACTACTAGAACCAA
CCGGGGTCACACAGGAGGGGGTAAACACTGGGGCTTTTTTCTTCCTTTTC
TGGTTCTTTTTTGCCCCACCTTCCTCCTTCGGTGCTTGCCTTGGATTTTA
TCGCGAGAAGGATGCAGCCATCCCTTTCCCTCGTCAACGTGCTAAGTCGA
AGTTTGGTACTCACGAGCTTTTTCAGCTATGGTATCGCTTTCACCTGCAA
AGTCGCAAAATAATCACCTTTGCTTGGAATTGAACTCCAGACTTTGCTGC
TAGTGGGTTCGAGCTTAAACCACTAGTCTAGTCCACCGGGGCGACCGGCA
GTGCTGTTCTCTAAATACACCACAACGTGTAGTACACACGTCTCGCCTTG
ATCGGAAAGCGACTGTCGCCAAAATAATTGGGACGAAAACACACACACAT
AGACAAGAGACAAGAGAGCAACGCGAAACTTTCGTGGTAATAACTCTACA
ACGGTAGGCAACTCGTGACTCGTGACTCGTGACTCGTTCGCAGTCGTTCT
CCCCTTAACGCCCAGAACGCGCGTCTCGTTTGGAACATTAAAATGCCACA
AAAGAGGATGCGTGAGCTCTGTTTTCCGCCCCAAAAAAACTCTCTGCACT
GCTGCTGCTGCCGCGATCATGTACTGCAGCCTCGCCGTAGTGCGTTGCTC
AGTGCCAGTGTTGTACTTGCTGACGACCACACTCGAAGAAATCTGTCCAC
GTTTGGCAGCACGTATTATAGTGATGGACACCAACGCATTTACTGTTCGT
GCCAAGATCTGCATGTCTTATTATCTGCAATAACTCCCACGCCACCCTCC
TGCTGTACACTAGCTTTTGCCCTGGAAAACGGTGTTCTTGTCCGATTCAA
CCGCCCGTCCCGCTCTCCTCGCTTTTGGTTCTGCTTCTCTTGTTCAGCGG
CGAAGTGTTTTCCTGCCATTCTTCTCGGGGTAGCCTTGGCAACATCACCA
TTGTCAGTCCCACTTCTTGACAACCACGCGGTCAACTCTAACGGGGTTTT
GGGCGCCTCTCCCGTGTTCGCGGACGAAGATAAGGGAATGTCTAGCGTGA
GTGACTCCAAGCTGTCTATTGGCGCCGCAAGCACGGGCGACAAAGGTAGG
CACTGCGCGTCTGCTTGGCCAGGCTGTCTCTGTGATTGAAGAGGTCCTTG
CGATTCGGATATTTCCTCCTGGTCGGAGCCCATCGAGCATGCTTTCGAGC
CAGCAAGACTCGTGGCCATCATGTACTGCGCATGCCAACCTCCTTCATCC
CGTGTTTAACGCAGCAACAGCAACTTTGAACGACGGGCTCTTGCGTTTGG
GAAGGCATCACCATCGTGATTACTTATGCCTTATTTATGTATTCTCACAT
GATCACCAGCATGTCTTGTACGACGTCTATTCTCACCATGACAACAACTA
CTTTGGTCTTGCGTTGGCTCTGCGCGGGTACTACATGTAGGATGGATGAT
GGACGGATGGACGCGCAAGCAGCGTACCTGTTACCTGTTACTATACTTCT
GCTGTTGTTTCTGCAATGCAACACACTAACCCCCCGTTTTCCCGCTTTTT
GATGCTGTGGAAACAACGGCAATGGGTCGATTTAACTTGACTTGGCTTTT
AACAGGGGCGAGAAAAACCGTCACGCGAGGGGTCAACATTGAAAACGCCG
ACTACCACGGCAAGGTGGGTCAAGTACAATGACATTGCATGCACGCTATT
GTATTGTATTGTATTGTAGGGTTTCCGCTGGAAGTAAGCCAAGCCAAGAA
CACACCTCACCGAAAAAGACTTAAAACTTTCTAATAAATAATACGGAGTA
TAATACTTCGTAGGTGTTGCTTTCCCCTCTTTCCTGCGACACTTGTGCTT
TCAATTAGATATGGTTGTTGTTCCTACAAGAGCCAACACGAGTAGATGTT
CAGGTAGTAGTAGTCTTCAAGCGCGCGTGAAGAAGTTGCGGTACGGTACG
GTGCGGTCTGTCAGCCTTTTCTTGGAAGAAACAAGCCTGTGCTGGTAGCC
GCAAAGCGTGTGTGTGCGCCTTGTGATGACGGCAAACCCTGACTATGGTA
CGTATCGTATCAACAACAGGATCTGTCTGGCGTGTCCTTCCAGCAGTCCC
TGGTAAGAGGGACGAACTTCAAGGGATCCAAACTGGTGGCAGCAGGTGAG
TCCATTTACATACATACATACGTGTCAGTCAGCTCGGCCTTTGTGTTTTA
GTCGGTAGTCTACGCAGGCTTGTAGTAAGAAAACATATGGGATGAAGTAT
GGAATCGGCTGTGGGGGGGTCGGTGGTTGGGGTTAGGGTTACGGAGCCCC
CTGTACTCTAAATCACAGAAGTACAGTAATTTCTTCGCGAAGGCAGTCCG
TTTTAGTTCCACGGCAAGTAGCACGGTTGCTTCACAGGACCAGGGTGGGT
CATGAGTCATGGGTCATGGGTCACTCCAAAGCCTGAATGTCATGCACCGC
GGCCGCTGCCGTAGACACACGGGGCGGTGTCGAGTATTCGTTTCAATAAT
AGTGTTCCGCAGCTATTTAGTCTGCACTTTTGAGCACTTCAACAGCAGTG
TTCGTGTCCGCCGTCCTGATGTGGTCGTGGTCATACCAGCTGCAGTAGCT
CATACGGTACATGAGTACCAAAGGCTCGGCGAAGAAGCATACAAAACGCG
CCTTGATTTATCTACGAATACACAAGTAGTCTGGGTAGGCGTTGAATCTT
AATCTCCCCCGGTGTCGACTGTCTGTGCGGAAACGCGGAAATTTGAGACA
CCACAAAGACATTGTGATAGTGCAATTTCGATTTGTCCCTCTTGTCCCTT
TTTTCTTTTTTCCATTGGGTATCTTGTGCCTTGTCTTGTCTTGTCGTGTC
TTGTCTTGTCTTGTCTTGCCTTGTCTTTTCTTGTCTTGTCTTGTCTTATC
TTGTCTTATCTTGTCTTGTCTTGTCTTGTCGTGTCTTGTCGTGTCTTGTC
TTATCGTGTCTTGTCTTGTCTTGTCTTGCAGGGTTCTTCGACGCTGACCT
GTCGAACTGCAACTTCGAGTCTGCGAACATGAACCAAGCCAACCTTGAGC
TCGCCAACTTGAGGTGAGGTCATCTGGGCTTAAGCTTAGCTTGGCGGTGC
TGATATTTATACTTATACTTGTATATAGCACAAGAGGTTTGGGTTGACCC
CCATGTACCATCCGCTATCCCCGTCTACTGCTGTACCCCCGGCCGTGTTG
CTTCTCGATGTGTCGTGTCGTGCCAAGACGATTGTAAAAGACCACCGCTA
CAGCAGTGACAAGTGACACGGTTCGAAACGTACAAGAAGTAGGTGCATCC
GTTGCACACGTACGTGCAGCAGCTATGCAGGATCCTTCCCTTTGGCCCTA
AGTAGCACAGGGGGTCTCTTGCTGGTATAGGCGAAGTATGTCCCTACAGT
ACCCGCCAGCCTATTTGAAGCCCCCCCCCCCTCCCCCATCGTGTGTATGT
GGTTTGTGATTTGATGCATCTCCGGGCTCCTCCCTCCTTTGTTTCGCGTC
CTCTGTATCGATCGGTGTATCGATCCATGTATCGGTGTGTGTGTTGAATC
TCTTCTCTCCTCTTGCCGGGACTCGCTTTACCAATGGATCAATGCATCAG
CGGCGCAAATATGAAGAATGCCGTGGTCACGGAGGCGTATATCTCGGGTG
CCACCAAAATGGAGCCGGCAAATGTGGAGGGGGCGGGTGAGCGATCAGAT
AGTTTCTTTCGCTAAACAATTTTAAACGCTGCTTCATTATGTTTTGATTT
GTGCCTGGCGCTTTCCTTTTCCATTTCCATTTCCATTCCCATTCCCATTT
CCATGTTTTGTCTTTTGTCTTGCCGACTTTCGTCATGGGCGTAGGCATCG
GTGTAGGCACAGGTGTCACGCGCGTTTTCGCTGCAGGACTTCACCGCCCA
ACATAAGTTCCATGTGTATGGTTCCCTATCATATGTGCTGTTGCTTTGTC
CGAAAGGGCGTTTGACTTGAGTCAGCCGACCCGACTCGTTTAATGTAGGC
CGCACGTTTCCATGTTGCATCGATGCATGCACCGGCTGTGCGTTTGTTTC
TGAGTTGGTCTTGTCTTCCCTCTTTCGTACCCCCTCCCCCTCGCCCTACA
CCTCTACGACGTTTGTTTCGTTTTTCGGGGGGAAACTGCCGCGGCGAAAC
AAATGGAATGGGATGGAATCGAGCGGATCAGATTTCACGGACACGTTCCT
GAGGAAAGACCAGGTCAAGTACTTGTGCGAGCTAGACAGCACCAAGGGCA
CCAACCCTGTCACAGGGGTCGACACGCGGGATAGCTTGGGCTGCCCCTGA
TGTAGTCTAGAAGCGCTGCTGCTCCGCTGGGGGAGGCTGCGGAAGTCACT
ACTGCTGTCAGCGTAACCTCTTGAGTGAGAGGCATTTTCCGGAGCTAATT
TACTGCGCGGGAGCACGCACCGGCGGCAATGGGTGGCGCGAACATGTCGA
TTCGCCCGCAAGCTTGCATAAAGACAGATAGAGAAGACTAGATGGCCGTG
GGGGTGGAATAGCGACAGCGCCGTGCTCCGTTTGACTTGTTGTGTGATGC
CGCCGAGTGGGGCACCTTTCACGCGACGGCGTTTTCGTGTCTCGAGTCGA
ACCAACTTTTACTTTTCCCGCCGAGTCTGGATGCTACTCTGATGGGTTGT
GTTGTACAAAGGCAGGAAACGGCATCACTATCATCACTGCAAATATTAGA
AACCCGTAAGCCGCAAATCGGCATTCGAGGGTAGCGTCCGTCGGCTTGCA
CCGTGCTCACCAAACGGCAGATACGGGGGCCCGCAATATGTGGTAGACTA
GACTAGACCGCTGCTGTGGTGGTTGAGTGGTTGAGTCCCGATCAACGTCC
CTCCCGCATGGGATAGGGAAAGGACAAAAGCACGAGAAGAGGTAAAACAA
AATGCAGTGAGGGGGCTTAGGGAGCGAACCCGTTCAACTCTCAACTCGCA
AG

Coding sequence (CDS) from alignment at C-linearis_contig99:294361..299862+

>mRNA_C-linearis_contig99.17167.1 ID=mRNA_C-linearis_contig99.17167.1|Name=mRNA_C-linearis_contig99.17167.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at C-linearis_contig99:294361..299862+ (Chordaria linearis ClinC8C monoicous)
ATGTTGTCTACTGCTAGAAAAAGCGTGGTGCTACTCTTTGCAGGGGCATC
AGTCGCAAATTCGTTCGTTGTGACCAGCCCATTGCACCTCTCTACCCGTC
CTCCCTCGATGGCAACATCAATGAGCCTTCGTGGTAACGATGTTGTCTAC
TGCTAGAAAAAGCGTGGTGCTACTCTTTGCAGGGGCATCAGTCGCAAATT
CGTTCGTTGTGACCAGCCCATTGCACCTCTCTACCCGTCCTCCCTCGATG
GCAACATCAATGAGCCTTCGTGGTAACGCGGCGAAGTGTTTTCCTGCCAT
TCTTCTCGGGGTAGCCTTGGCAACATCACCATTGTCAGTCCCACTTCTTG
ACAACCACGCGGTCAACTCTAACGGGGTTTTGGGCGCCTCTCCCGTGTTC
GCGGACGAAGATAAGGGAATGTCTAGCGTGAGTGACTCCAAGCTGTCTAT
TGGCGCCGCAAGCACGGGCGACAAAGCGGCGAAGTGTTTTCCTGCCATTC
TTCTCGGGGTAGCCTTGGCAACATCACCATTGTCAGTCCCACTTCTTGAC
AACCACGCGGTCAACTCTAACGGGGTTTTGGGCGCCTCTCCCGTGTTCGC
GGACGAAGATAAGGGAATGTCTAGCGTGAGTGACTCCAAGCTGTCTATTG
GCGCCGCAAGCACGGGCGACAAAGGGGCGAGAAAAACCGTCACGCGAGGG
GTCAACATTGAAAACGCCGACTACCACGGCAAGGGGCGAGAAAAACCGTC
ACGCGAGGGGTCAACATTGAAAACGCCGACTACCACGGCAAGGATCTGTC
TGGCGTGTCCTTCCAGCAGTCCCTGGTAAGAGGGACGAACTTCAAGGGAT
CCAAACTGGTGGCAGCAGGATCTGTCTGGCGTGTCCTTCCAGCAGTCCCT
GGTAAGAGGGACGAACTTCAAGGGATCCAAACTGGTGGCAGCAGGGTTCT
TCGACGCTGACCTGTCGAACTGCAACTTCGAGTCTGCGAACATGAACCAA
GCCAACCTTGAGCTCGCCAACTTGAGGGTTCTTCGACGCTGACCTGTCGA
ACTGCAACTTCGAGTCTGCGAACATGAACCAAGCCAACCTTGAGCTCGCC
AACTTGAGCGGCGCAAATATGAAGAATGCCGTGGTCACGGAGGCGTATAT
CTCGGGTGCCACCAAAATGGAGCCGGCAAATGTGGAGGGGGCGGCGGCGC
AAATATGAAGAATGCCGTGGTCACGGAGGCGTATATCTCGGGTGCCACCA
AAATGGAGCCGGCAAATGTGGAGGGGGCGGATTTCACGGACACGTTCCTG
AGGAAAGACCAGGTCAAGTACTTGTGCGAGCTAGACAGCACCAAGGGCAC
CAACCCTGTCACAGGGGTCGACACGCGGGATAGCTTGGGCTGCCCCTGAA
TTTCACGGACACGTTCCTGAGGAAAGACCAGGTCAAGTACTTGTGCGAGC
TAGACAGCACCAAGGGCACCAACCCTGTCACAGGGGTCGACACGCGGGAT
AGCTTGGGCTGCCCCTGA