mRNA_C-linearis_contig99.17167.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Match: D7G7U8_ECTSI (Thylakoid lumenal 15 kDa protein, chloroplast (P15) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7U8_ECTSI) HSP 1 Score: 239 bits (611), Expect = 7.880e-73 Identity = 163/213 (76.53%), Postives = 179/213 (84.04%), Query Frame = 1 Query: 178 SMSLRGNAAKCFPAILLGVALATSPLSVPLLDNHAVNSNGVLGASPVFADEDKGMSSVSDSKLSIGAASTGDKGARKTVTRGVNIENADYHGKDLSGVSFQQSLVRGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVTEAYISGATKMEPANVEGADFTDTFLRKDQVKYLCELDSTKGTNPVTGVDTRDSLGCP 816
+M+L +AA+C PA+LLGV L TS PLLD+ A ++ VLGASPVFAD DKGMSSVSDSKLS+GAASTGDKGARKTVTRGVNIENADYH KDLS VSFQQSLVRGTN XXXXXXXXXXXXXXXXXXXXXXXXXXXXX +VTEAY+SGATKMEPA +EGADFTDTFLRKDQV+YLC L++ KGTNPV+GVDTRDSLGCP
Sbjct: 38 TMNLFNDAARCVPAVLLGVTLTTS---APLLDSPAAHT-AVLGASPVFAD-DKGMSSVSDSKLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLETAKGTNPVSGVDTRDSLGCP 245
BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Match: A0A835YUD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUD1_9STRA) HSP 1 Score: 153 bits (387), Expect = 5.800e-40 Identity = 107/160 (66.88%), Postives = 120/160 (75.00%), Query Frame = 1 Query: 334 KGMSSVSDSKLSIGAASTGDKGARKTVTRGVNIENADYHGKDLSGVSFQQSLVRGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVTEAYISGATKMEPANVEGADFTDTFLRKDQVKYLCELDSTKGTNPVTGVDTRDSLGC 813
+G SSVSD+K+ GAAST D G+RK +TRGVN+ENAD+HGKD+SGVSFQQSLVRGTN XXXXXXXXXXXXXXXXXXXXXXXX Y+SGATK EP ++EGADFTDTFLRKDQ+ YLC + KGTNPVTGVDT DSL C
Sbjct: 75 EGASSVSDTKMLSGAASTLDTGSRKIITRGVNLENADFHGKDMSGVSFQQSLVRGTNFASSKLIGSGFFDADLSNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVSGATKFEPKDIEGADFTDTFLRKDQIMYLCAI--AKGTNPVTGVDTADSLSC 232
BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Match: A0A7S2CVZ3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CVZ3_9STRA) HSP 1 Score: 125 bits (313), Expect = 1.130e-29 Identity = 102/196 (52.04%), Postives = 127/196 (64.80%), Query Frame = 1 Query: 235 ALATSPLSVPLLDNHAVNSNGVLGASPVFADEDKGMSSVSDSKLSIGAAST--GDKGARKTVTRGVNIENADYHGKDLSGVSFQQSLVRGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVTEAYISGATKMEPANVEGADFTDTFLRKDQVKYLCELDSTKGTNPVTGVDTRDSLGCP 816
A+++ + P A+ + +L A+P FA+ D G S+V ++K+ G AST +GARKT+TRGV ++ A++ G+DL+GVSFQQS +RG XXXXXXXXXXXXXXXXXXXXXXXXXX GAT + A +EGADFTDTFLRKDQ K LC + KGTNP TGVDTRDSL CP
Sbjct: 15 AVSSMEIKAPAAAASALAAALLLSATPAFAESDGGASNVENTKIMNGGASTIVNQRGARKTITRGVQLDKANFAGEDLTGVSFQQSQIRGGVFEKTKLLGASFFDATLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATSFKDAKIEGADFTDTFLRKDQQKELCA--TAKGTNPTTGVDTRDSLMCP 208
BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Match: A0A7S1BVJ1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BVJ1_9STRA) HSP 1 Score: 120 bits (300), Expect = 6.730e-28 Identity = 110/218 (50.46%), Postives = 132/218 (60.55%), Query Frame = 1 Query: 163 PSMATSMSLRGNAAKCFPAILLGVALATSPLSVPLLDNHAVNSNGVLGASPVFADEDKGMSSVSDSKLSIGAASTGDKGARKTVTRGVNIENADYHGKDLSGVSFQQSLVRGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVTEAYISGATKMEPA-NVEGADFTDTFLRKDQVKYLCELDSTKGTNPVTGVDTRDSLGC 813
PS A S+ R AA A+LL +LA SPL DN A + VS+ K++ G AST G T+TRGVN++ AD+ G+ L GV+FQQS+VR NXXXXXXXXXXXXXXXXXXXXXXXXXXXX AVV EAY+ G T ++EGADF+DT+LR DQ KYLCE + KGTN VTG+DTR+SL C
Sbjct: 6 PSAAASLPDR--AASLAAALLLASSLALSPLPSSAADNGATD--------------------VSNQKITTGGASTLQSGRTITITRGVNLDRADFGGQKLKGVAFQQSIVRDANXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNLEMCQLNRANLRDAVVREAYVGGTTMFTGIKSIEGADFSDTYLRADQKKYLCEHPTAKGTNSVTGMDTRESLMC 201
BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Match: A0A448ZI41_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZI41_9STRA) HSP 1 Score: 120 bits (302), Expect = 8.040e-28 Identity = 87/168 (51.79%), Postives = 115/168 (68.45%), Query Frame = 1 Query: 313 PVFADEDKGMSSVSDSKLSIGAASTGDKGARKTVTRGVNIENADYHGKDLSGVSFQQSLVRGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVTEAYISGATKMEPA-NVEGADFTDTFLRKDQVKYLCELDSTKGTNPVTGVDTRDSLGC 813
P FAD+ G ++ S++K++ G AST G +TRGVN++N+++ G++L GV+FQQS+VR +N X XXXXXXXXXXXXXXXXXXX V+ E Y+SGAT E ++EG+D+++TFLRKDQ KYLCE + KGTNPVTGVDTR+SL C
Sbjct: 68 PAFADQ--GATAASNAKITTGGASTLQSGRTIAITRGVNLDNSNFXGQNLKGVAFQQSIVRDSNFKGANXVXXXXXXXXXXXXXXXXXXXTLSNVEMAQFNRANLKNTVMKEVYVSGATLFEGVKSIEGSDWSETFLRKDQQKYLCEHPTAKGTNPVTGVDTRESLMC 233
BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Match: A0A7S3L2E8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L2E8_9STRA) HSP 1 Score: 119 bits (297), Expect = 5.020e-27 Identity = 111/180 (61.67%), Postives = 135/180 (75.00%), Query Frame = 1 Query: 280 AVNSNGVLGASPVFADEDKGMSSVSDSKLSIGAASTGDKGARKTVTRGVNIENADYHGKDLSGVSFQQSLVRGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVTEAYISGATKMEPA-NVEGADFTDTFLRKDQVKYLCELDSTKGTNPVTGVDTRDSLGCP 816
AV G+L P A D G S S++K++ G AST G +TRGVN++ +D+ ++L GV+FQQS+VR + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A++ E Y+SGAT E ++EG+D+TDT LRKDQ KYLC + KGTNPVTGVDTR+SL CP
Sbjct: 64 AVFLAGILALHPAMAAGDGGASVGSNAKITTGGASTLQSGRTIAITRGVNLDKSDFSNQNLKGVAFQQSIVRDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNAILKEMYVSGATLFEGVKDIEGSDWTDTELRKDQKKYLCNHPTAKGTNPVTGVDTRESLMCP 243
BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Match: A0A7S1QSD0_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1QSD0_ALECA) HSP 1 Score: 116 bits (291), Expect = 3.200e-26 Identity = 89/154 (57.79%), Postives = 108/154 (70.13%), Query Frame = 1 Query: 358 SKLSIGAASTG-DKGARKTVTRGVNIENADYHGKDLSGVSFQQSLVRGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVTEAYISGATKMEPANVEGADFTDTFLRKDQVKYLCELDSTKGTNPVTGVDTRDSLGCP 816
SK+ G AST G RK +TRG+N+E A+Y G+DLSGVSFQQS+VR XXXXXXXXXXXXXXXXXXXXXXXXX A+ T+ Y++G T+MEP ++GADFT T RKDQ+ YLC++ +GTNPVT VDTR+SL CP
Sbjct: 89 SKIKAGGASTSAGLGTRKIITRGINLEKANYAGQDLSGVSFQQSIVREXXXXXXXXXXXXXXXXXXXXXXXXXXXMTQANLELARATDAIFTNAIATDMYVNGTTRMEPKRIDGADFTGTIFRKDQLNYLCKI--AEGTNPVTKVDTRESLMCP 240
BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Match: A0A7S4HSJ0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HSJ0_9STRA) HSP 1 Score: 115 bits (289), Expect = 8.640e-26 Identity = 97/213 (45.54%), Postives = 131/213 (61.50%), Query Frame = 1 Query: 178 SMSLRGNAAKCFPAILLGVALATSPLSVPLLDNHAVNSNGVLGASPVFADEDKGMSSVSDSKLSIGAASTGDKGARKTVTRGVNIENADYHGKDLSGVSFQQSLVRGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVTEAYISGATKMEPA-NVEGADFTDTFLRKDQVKYLCELDSTKGTNPVTGVDTRDSLGC 813
++ + AA F A+ + A+A SP + A +D G S+ +++K++ G AST G +TRGVN++ +D+ G++L GV+FQQS+VR +NXXXXXXXXXXXXXXXXXXXXXXXXXX AV+ E Y+SGAT + ++EG+D+TDT LR+DQ KYLC + KGTNP TGVDTR+SL C
Sbjct: 61 ALKAKSAAASVFAALSIAAAVAFSPPAA-------------------IAADDTGASTAANAKITTGGASTLQSGRTIAITRGVNLDRSDFGGQNLKGVAFQQSIVRDSNXXXXXXXXXXXXXXXXXXXXXXXXXXTLANFEMAQFNRANLKNAVLREMYVSGATILTGVKDIEGSDWTDTMLRRDQTKYLCSHPTAKGTNPTTGVDTRESLMC 254
BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Match: A0A7S3Y7I5_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Y7I5_9EUKA) HSP 1 Score: 115 bits (288), Expect = 9.660e-26 Identity = 108/159 (67.92%), Postives = 129/159 (81.13%), Query Frame = 1 Query: 349 VSDSKLSIGAAST-GDKGARKT---VTRGVNIENADYHGKDLSGVSFQQSLVRGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVTEAYISGATKMEPANVEGADFTDTFLRKDQVKYLCELDSTKGTNPVTGVDTRDSLGC 813
SDSK++ GAAST GDKG TRGV ++ +D+ GKDLSGVSFQQS+VR TN XXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++ EAYISG+T + N++ +D+TDTF+RKDQ++YLC++ S GTNP TGV TR+SLGC
Sbjct: 90 ASDSKIAKGAASTSGDKGIAAQSGIATRGVILDYSDFSGKDLSGVSFQQSIVRKTNFXXXXXXXXXXFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINEAYISGSTVLRDINIKDSDWTDTFVRKDQLQYLCQIAS--GTNPTTGVGTRESLGC 246
BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Match: A0A7S2TUI3_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TUI3_9EUKA) HSP 1 Score: 115 bits (288), Expect = 1.010e-25 Identity = 108/159 (67.92%), Postives = 129/159 (81.13%), Query Frame = 1 Query: 349 VSDSKLSIGAAST-GDKGARKT---VTRGVNIENADYHGKDLSGVSFQQSLVRGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVTEAYISGATKMEPANVEGADFTDTFLRKDQVKYLCELDSTKGTNPVTGVDTRDSLGC 813
SDSK++ GAAST GDKG TRGV ++ +D+ GKDLSGVSFQQS+VR TN XXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++ EAYISG+T + N++ +D+TDTF+RKDQ++YLC++ S GTNP TGV TR+SLGC
Sbjct: 92 ASDSKIAKGAASTSGDKGIAAQSGIATRGVILDYSDFSGKDLSGVSFQQSIVRKTNFXXXXXXXXXXFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINEAYISGSTVLRDINIKDSDWTDTFVRKDQLQYLCQIAS--GTNPTTGVGTRESLGC 248 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17167.1 >prot_C-linearis_contig99.17167.1 ID=prot_C-linearis_contig99.17167.1|Name=mRNA_C-linearis_contig99.17167.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=253bp MLSTARKSVVLLFAGASVANSFVVTSPLHLSTRPPSMATSMSLRGNAAKCback to top mRNA from alignment at C-linearis_contig99:294361..299862+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17167.1 ID=mRNA_C-linearis_contig99.17167.1|Name=mRNA_C-linearis_contig99.17167.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5502bp|location=Sequence derived from alignment at C-linearis_contig99:294361..299862+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:294361..299862+ >mRNA_C-linearis_contig99.17167.1 ID=mRNA_C-linearis_contig99.17167.1|Name=mRNA_C-linearis_contig99.17167.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at C-linearis_contig99:294361..299862+ (Chordaria linearis ClinC8C monoicous)back to top |