mRNA_C-linearis_contig97.17075.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match: A0A6H5JKJ0_9PHAE (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ0_9PHAE) HSP 1 Score: 238 bits (606), Expect = 2.220e-71 Identity = 152/192 (79.17%), Postives = 158/192 (82.29%), Query Frame = 3 Query: 315 NTPPRIGVHPPTPPPPGQ----MMAYPQQHPQQHPKXXXXXXXXX------RMGPPGMTFQHPHPXXXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQDLS 860
N PPR HPP P PPGQ +M YPQ XXXXXXXXX RMG PGM FQHP PXXXXXX AFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFV D+FGDI+LGLYLVRGDALVLMGELD EETPRL++VSADEIIEAQQEASAE+RQDAKLDWLFQDLS
Sbjct: 58 NPPPR--THPPNPYPPGQQQQQVMVYPQHXXXXXXXXXXXXXXXXXXXXXXRMGLPGMGFQHPLPXXXXXX--AFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEDRQDAKLDWLFQDLS 245
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match: D8LL00_ECTSI (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL00_ECTSI) HSP 1 Score: 231 bits (588), Expect = 3.050e-70 Identity = 127/140 (90.71%), Postives = 131/140 (93.57%), Query Frame = 3 Query: 441 MGPPGMTFQHPHPXXXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQDLS 860
MG PGM FQHP PXXXXXX AFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFV D+FGDI+LGLYLVRGDALVLMGELD EETPRL++VSADEIIEAQQEASAEERQDAKLDWLFQDLS
Sbjct: 1 MGLPGMGFQHPVPXXXXXX--AFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 138
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match: A0A835ZG91_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG91_9STRA) HSP 1 Score: 148 bits (373), Expect = 1.640e-37 Identity = 78/122 (63.93%), Postives = 96/122 (78.69%), Query Frame = 3 Query: 504 AFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALEETPR-----LKKVSADEIIEAQQEASAEERQDAKLDWLFQD 854
+FFPG+ASL EQLDK VMVVLRDGRHLVG+MRSYDQFSNIVLEDTHERHFVG ++GDI LGLY+VRGD++VL+GE+ A LK+V+ADEI++AQQE+ + K++W F D
Sbjct: 116 SFFPGAASLHEQLDKVVMVVLRDGRHLVGLMRSYDQFSNIVLEDTHERHFVGALYGDIPLGLYIVRGDSVVLLGEVAAEXXXXXXXXXALLKRVTADEILQAQQESDVD---PFKVEWDFGD 234
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match: K3WSU0_GLOUD (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSU0_GLOUD) HSP 1 Score: 130 bits (327), Expect = 2.020e-32 Identity = 64/115 (55.65%), Postives = 86/115 (74.78%), Query Frame = 3 Query: 507 FFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALE-ETPRLKKVSADEIIEAQQEASAEERQDAKLDWLF 848
+FPGS SL EQLDK+++VVLRDGRHLVG +RS+DQFSNI+LEDT+ERH MF DI LGL ++RGD +VL+GELD E + P +K+ S +EI+EA++ +A+ + W F
Sbjct: 4 YFPGSISLIEQLDKKILVVLRDGRHLVGYIRSFDQFSNIILEDTYERHVADGMFCDIELGLNIIRGDNIVLLGELDEDKERDQPHMKRASIEEILEAEERLNAKGAASVREQWDF 118
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match: H3GH42_PHYRM (U6 snRNA-associated Sm-like protein LSm1 n=43 Tax=Peronosporaceae TaxID=4777 RepID=H3GH42_PHYRM) HSP 1 Score: 126 bits (317), Expect = 5.020e-31 Identity = 59/115 (51.30%), Postives = 87/115 (75.65%), Query Frame = 3 Query: 510 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALE-ETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQ 851
FPG++SL +QLDK+V++VLRDGRHLVG +RS+DQ+SNI+LEDT ERH G +F DI LGL ++RGD +VL+GELD+ E + P +K+V +E++EA+++ + + W F+
Sbjct: 5 FPGNSSLIQQLDKQVLMVLRDGRHLVGYLRSFDQYSNIILEDTFERHVAGGLFCDIELGLNIIRGDNIVLLGELDSEKERDQPHMKRVELEEVLEAEEQLNEAGNTSVRQQWDFE 119
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match: A0A7S2XVC4_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVC4_9STRA) HSP 1 Score: 126 bits (316), Expect = 6.330e-31 Identity = 62/98 (63.27%), Postives = 81/98 (82.65%), Query Frame = 3 Query: 507 FFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALEETPRL-KKVSADEIIEAQ 797
FF G SL EQLDK+++VVLRDGRHLVGV+RS+DQFSN+V+E+THERH V +FGDI LGLY+VRGD +VL+GE+D E + + ++VSA+EI+ AQ
Sbjct: 4 FFAGGMSLVEQLDKKILVVLRDGRHLVGVLRSFDQFSNMVMENTHERHVVEGIFGDIPLGLYIVRGDNVVLLGEVDEEKESSSQHPRRVSAEEILHAQ 101
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match: A0A6V1WH12_HETAK (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WH12_HETAK) HSP 1 Score: 124 bits (312), Expect = 2.310e-30 Identity = 62/105 (59.05%), Postives = 82/105 (78.10%), Query Frame = 3 Query: 513 PGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALEETPRLKKVSADEIIEAQQEASAEERQD 827
PG L EQLDKR+++VL+DGRHL+G +RS+DQFSN+V+E+T ERH V +GDI LGLYLVRGDA+VL+GE+D A E L++VSADEI+E ++E + R D
Sbjct: 7 PGIMGLVEQLDKRILIVLQDGRHLIGTLRSFDQFSNVVIENTFERHVVDGCYGDIPLGLYLVRGDAVVLLGEVDDAGHEGI-LRRVSADEILELEREKESRARDD 110
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match: A0A4D9CWQ3_9STRA (Sm domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWQ3_9STRA) HSP 1 Score: 131 bits (329), Expect = 3.650e-30 Identity = 72/135 (53.33%), Postives = 96/135 (71.11%), Query Frame = 3 Query: 447 PPGMTFQHPHPXXXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQ 851
PPG + P P + PG+ASL EQLD+RV+VVLRDGR+LVGV+RS+DQFSN+VLEDT+ERH V +GD+ LGLYLVRGDA+VL+GE++A E L+KV+ +EI+E Q + AK++W F+
Sbjct: 221 PPGPHYMLP-PRPFVAVLPDYLPGAASLVEQLDRRVLVVLRDGRNLVGVLRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAE-REGKSLEKVTTEEILELLQGSG---EAGAKVEWDFE 350
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match: A0A0P1A9M0_PLAHL (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9M0_PLAHL) HSP 1 Score: 124 bits (310), Expect = 5.260e-30 Identity = 60/113 (53.10%), Postives = 86/113 (76.11%), Query Frame = 3 Query: 510 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALE-ETPRLKKVSADEIIEAQQEASAEERQDAKLDWL 845
FPG++SL +QLDK+V++VLRDGRHLVG +RS+DQFSNI+LEDT+ERH G +F DI LGL ++RG +VL+GELD+ E + P +K+V +E++EA++ + E L +L
Sbjct: 5 FPGNSSLIQQLDKQVLMVLRDGRHLVGNLRSFDQFSNIILEDTYERHVAGGLFCDIELGLNIIRGGNIVLLGELDSDKERDQPHMKRVKLEEVLEAEERLNEEGNTSLSLSFL 117
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Match: A0A7S2CG66_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG66_9STRA) HSP 1 Score: 123 bits (309), Expect = 7.480e-30 Identity = 61/128 (47.66%), Postives = 87/128 (67.97%), Query Frame = 3 Query: 471 PHPXXXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDMFGDIALGLYLVRGDALVLMGELDAALEETPRLKKVSADEIIEAQQEASAEERQDAKLDWLFQD 854
P P PG+ASL +QLDKR+++VLRDGRHLVG++RS+DQFSN+VLEDTHERH + D+ALGL++VRGD +VL+GELD E + L D ++EA++ ++ K++W F++
Sbjct: 2 PPPPMEPTQMGLLLPGAASLVDQLDKRILIVLRDGRHLVGILRSFDQFSNMVLEDTHERHVANGLRSDMALGLFIVRGDNIVLLGELDPEKEASSGLIDAEPDVVLEAERNSAF-----TKVEWDFEN 124 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17075.1 >prot_C-linearis_contig97.17075.1 ID=prot_C-linearis_contig97.17075.1|Name=mRNA_C-linearis_contig97.17075.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=246bp MADTPKERASRAQKAQAQQPKARAAPRTQGPASGGPRPARGTSDGGAGAGback to top mRNA from alignment at C-linearis_contig97:211678..214437+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig97.17075.1 ID=mRNA_C-linearis_contig97.17075.1|Name=mRNA_C-linearis_contig97.17075.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2760bp|location=Sequence derived from alignment at C-linearis_contig97:211678..214437+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig97:211678..214437+ >mRNA_C-linearis_contig97.17075.1 ID=mRNA_C-linearis_contig97.17075.1|Name=mRNA_C-linearis_contig97.17075.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at C-linearis_contig97:211678..214437+ (Chordaria linearis ClinC8C monoicous)back to top |