mRNA_C-linearis_contig105.936.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig105.936.1
Unique NamemRNA_C-linearis_contig105.936.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:115549..119152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2496
Cds size1299
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.936.1prot_C-linearis_contig105.936.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig105 117803..119101 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927391.7521136-UTR-C-linearis_contig105:115548..1163601622927391.7521136-UTR-C-linearis_contig105:115548..116360Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 115549..116360 -
1690879672.762031-UTR-C-linearis_contig105:115548..1163601690879672.762031-UTR-C-linearis_contig105:115548..116360Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 115549..116360 -
1622927391.7671025-UTR-C-linearis_contig105:117468..1178021622927391.7671025-UTR-C-linearis_contig105:117468..117802Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 117469..117802 -
1690879672.774581-UTR-C-linearis_contig105:117468..1178021690879672.774581-UTR-C-linearis_contig105:117468..117802Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 117469..117802 -
1622927391.800843-UTR-C-linearis_contig105:119101..1191521622927391.800843-UTR-C-linearis_contig105:119101..119152Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 119102..119152 -
1690879672.8082697-UTR-C-linearis_contig105:119101..1191521690879672.8082697-UTR-C-linearis_contig105:119101..119152Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 119102..119152 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927391.7839315-CDS-C-linearis_contig105:117802..1191011622927391.7839315-CDS-C-linearis_contig105:117802..119101Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 117803..119101 -
1690879672.7953134-CDS-C-linearis_contig105:117802..1191011690879672.7953134-CDS-C-linearis_contig105:117802..119101Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 117803..119101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig105.936.1

>prot_C-linearis_contig105.936.1 ID=prot_C-linearis_contig105.936.1|Name=mRNA_C-linearis_contig105.936.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=433bp
MMPSKCAHPGCTTCPSYGVREGTKKKANYVCSMPARKGMVDVISRKCGHH
GCIKRARYGMEVTKKAVLCFLHARAGMMDVVTKRCEHQGCNKRASHGTEG
KKAKLCSQHATEGMANVLSKRCGHQGCNKSPLFGVRGTTTPELCQQHAEE
GMVNVKYKRCGHRGCSKGASHGVEGTKKAELCLQHAKEGMVNIAKETCGH
QGCGRIPSYGVEGSKAEFCSQHAREGMVNVVGMRCGHPGCNKIPSYGMEG
TRKVEVCSHHATERMVNVKSRRCGHEGCTTGPSYGVDGTKKAEFCAQHAR
EGMVDVISKRCDHGGCTKQPSYGVEGAKTAKFFSQHAKKGVVGVKSKRCG
HQGCTKQPSYGVEGTKKTELFSQHAREGMVDVRNKRCGHLGCNQPVSIVR
NERYQEEGDLHPTRQGGYGVPESEVGPQRGWR*
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mRNA from alignment at C-linearis_contig105:115549..119152-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig105.936.1 ID=mRNA_C-linearis_contig105.936.1|Name=mRNA_C-linearis_contig105.936.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3604bp|location=Sequence derived from alignment at C-linearis_contig105:115549..119152- (Chordaria linearis ClinC8C monoicous)
CCCCTATTGACAATCAAACTGCAGAGGCAGGCCCGCCAGAAAAGAAGGGA
AATGATGCCCAGTAAATGCGCCCACCCAGGGTGCACCACGTGTCCGTCGT
ACGGCGTGAGGGAGGGTACGAAGAAGAAAGCTAATTATGTTTGCAGCATG
CCAGCCAGGAAGGGAATGGTGGACGTGATCAGCAGGAAGTGTGGTCACCA
TGGCTGCATCAAACGTGCGAGATATGGTATGGAGGTAACCAAGAAGGCTG
TATTATGTTTTCTGCACGCCAGGGCGGGAATGATGGACGTCGTCACGAAG
AGGTGTGAGCATCAAGGGTGCAACAAGCGAGCATCACACGGCACGGAAGG
CAAGAAAGCCAAGCTCTGCTCTCAGCACGCCACGGAGGGAATGGCGAACG
TCCTTAGCAAGAGATGCGGGCATCAAGGGTGCAACAAGAGTCCATTGTTC
GGCGTGCGAGGAACGACCACGCCCGAGCTCTGCCAACAGCACGCTGAGGA
GGGAATGGTGAATGTGAAGTACAAGCGATGTGGCCACCGTGGCTGCTCCA
AGGGTGCCTCGCACGGCGTGGAAGGTACCAAGAAGGCAGAGCTCTGCCTA
CAGCATGCGAAGGAGGGCATGGTGAACATCGCCAAGGAGACGTGTGGCCA
CCAAGGGTGCGGCAGAATCCCGTCGTACGGCGTTGAAGGAAGCAAGGCTG
AATTCTGCTCTCAGCACGCTAGGGAAGGAATGGTAAACGTGGTCGGCATG
AGGTGTGGGCATCCAGGGTGCAATAAGATTCCGTCGTACGGCATGGAAGG
TACCAGGAAGGTTGAGGTCTGCTCTCATCACGCCACAGAGAGAATGGTGA
ACGTAAAAAGCAGGAGGTGCGGGCACGAAGGGTGCACCACGGGTCCGTCG
TACGGCGTGGATGGCACCAAGAAAGCTGAGTTCTGCGCCCAGCATGCTAG
GGAGGGAATGGTGGACGTGATCAGCAAGAGGTGTGACCATGGAGGGTGCA
CTAAGCAGCCGTCGTACGGCGTAGAAGGTGCAAAGACGGCCAAATTCTTC
TCTCAGCACGCGAAGAAGGGGGTGGTTGGCGTGAAGAGCAAGAGGTGTGG
CCATCAAGGGTGCACTAAACAACCGTCGTACGGCGTGGAAGGTACCAAGA
AGACTGAACTCTTCTCCCAGCATGCCAGGGAGGGAATGGTGGACGTGCGT
AACAAGAGGTGTGGGCACCTAGGGTGCAACCAACCAGTGTCCATCGTACG
GAATGAAAGGTACCAAGAAGAGGGAGACCTGCATCCTACACGCCAAGGCG
GGTACGGTGTCCCTGAGAGTGAAGTCGGCCCGCAGCGCGGGTGGAGGTGA
TGGAAGCGGTGGGCGTGAGCGCTTGCATGGCGAGACTGATGTGGATGCCT
CCGTCCGCCGATCGGCGACGAAGAAACGATCGCTACAGGCTGACGCTGAT
CCTCTGATGCCCGTCGCTGTCAAGACAGAGCAAAAACGTGACGAAGGGAT
GGGGAGTCACAACCACACGGAACGACAAGCGAGCCCGCCGGATCGGATTC
ACCCCGTCGGTCCCAGCGGCAGTCAAAGCAGAGGCTATACGGAAAAGGGC
GGCCATCCATGCGACGAACTTGTCCTCGGAGTCAGAGCCGGAGGTGGAAC
CGGAGGCCGGAGTGGCCGTTTCGACCTAGACAAGGTGCGAAAGCCAGGTG
GCTGAAGGTGCGAAGGAGCGCTTGCAACACGTGCTCTTCGGTACTTCTCA
GTATTTAGTTGTATTTTTGGCCTTCCAATGGATACTTTCCCATTTCCCCA
TCCCACTTGCTATCGTCGTATGTGATGGGCAGTACACGATTCACCACTCA
CTGTGTAGTACTTTCGGCATATCTTTGGAACTCTAGTTGGTTTGTTGGTG
TTCGTTTAAGCGAAAGTGGTCTATAATAACAGGTAGCGTCCGTCCAATCT
CCAGGTGTCGCTATTCTTTGATTTTGTCGCGTTTTCTCGCACACGTCACC
AGAGCATCGTTGCCGCTCTCCGTCTCGGTCCATACGGACGTCATTTAGAA
GATAAATGCTGCGCTTTCTTCGTGTTGCCCCAATAGTCCAAGTAGCTTCA
CTGCCGCACTCCTTTTTCTTTCGGTGTTGCTGCCGCCGCCGCTACGACAC
GACGCTGTTTGCGCGCACTCTAAAGCACCCAGGCTGGACATTTCCTTTTC
TTTGTGCACGGTTCAACGATTGGTTGTCGGCGGGGCTTCGTTGTGCTAAA
TTACCACCTCTGGCTTTAATATTTGTGCCCCAGAGCGCGTCAACCTGCCG
TTGAGTGTTGTTGTTGTGGGACGATGGTTTCAAACTCGAGCATGGCCAAA
CTTTCCGGGGCTCACGCTACGCGTATTTTTTCGCACGCTGTCTGGGCAAG
GGGCGCGAAGCTACTCTGTGAAGCGCATAGAAGTACTATGCAACTCTCCC
GGTGTACAGGGCTTCTACTCATCCACACATGCGTGTATGCCATCGTTTCA
GCCGTTGACTTGCCGGAAAACATAGGCTTGAACGACACTCGGTGTAATAC
GGTTTGATGATGAAACGCGCCAAAAGAACAATCCTCTTCGTTTTGCCTCC
GGAATCGGAACCGTCGGGGCCGAACTTCCGCATTTGAAACGATTTGGACT
TGCTTTTTTGTGGTGGGGGTGTGGGCAACTCCAGCCGGAGGGGCGACCTT
GTCCTCAGTTCCATGTTCAACTACGCACCGGATATCGCTAACCCATCCGC
CCCAACCGATTGTTTGCTCTTGCCATTGCTGCTCTCAACCAGATGATATG
GAGTGAAGAGGAAACCCGACTGTCACGATGTGTGTTGCCCTCTTCTTCTC
TTCTTGCGACAGCTTCCTGCCTTGCCATGTTGTTGTGTGAGCGACACCTT
AGTTTTTCCGTTTGCCGCTTCGCAGAAAAGTGGCTTGTGACCCAATAGGA
TACATGAGATCATCGTTATTTTTGTTGTTTTCATAGGCATGAACGAGTTA
TGTTCGCTTGTTCTCCGTGCTACATTATCGGCGCACCCGCGGTGGTGTTG
GAGGGAAGAGGCACGCGAGGATTGGTGGGGCAGTGAGAGGGTAGAGACGT
GTAGTAGGTGGTCGGCGTTTCTTGATCCCGGTGAAGTTGCGGAAACTTAC
GTGCTTGCATACACAGGATGTGCGAAATGGTTATCTCTTCGAATCTTCTC
GCGAGCGCAAGGATAGCTAGGCTTCGCCATTGTTCTTACGTACCAGGTAC
CTGGTGGCATTTGTCGTGTTTTTTTTCTTGTGCTGGTGTTGCTTGGTCCT
TGGGTCGCCAGTCAAAGCCTTCATTTTGTTGTCCCGTTTCCCGGTTTCAA
CCTGTTCCGTGAGCTTTCTGTTTTTGTTGTTGTACTTGTTGGTTTTCGAT
GTTGTTTGCATTGTGGTGTGGGGAGGTGGTGCTACGCGCTGCATCTAGAG
GATTGTTGTTTGGAAGAATGTTGGCGATGGAGTATGTGACCGTTGACAAT
TGCTTTCTTCCATGTTTGGACCAGTTGGTTGATGGGCGACTTCGAAGTGG
GGACGGGTCTGTTGTTGCGCATAATTTTATCGATGCAACAAGCAAGTTCG
CACC
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Coding sequence (CDS) from alignment at C-linearis_contig105:115549..119152-

>mRNA_C-linearis_contig105.936.1 ID=mRNA_C-linearis_contig105.936.1|Name=mRNA_C-linearis_contig105.936.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2598bp|location=Sequence derived from alignment at C-linearis_contig105:115549..119152- (Chordaria linearis ClinC8C monoicous)
ATGATGCCCAGTAAATGCGCCCACCCAGGGTGCACCACGTGTCCGTCGTA
CGGCGTGAGGGAGGGTACGAAGAAGAAAGCTAATTATGTTTGCAGCATGC
CAGCCAGGAAGGGAATGGTGGACGTGATCAGCAGGAAGTGTGGTCACCAT
GGCTGCATCAAACGTGCGAGATATGGTATGGAGGTAACCAAGAAGGCTGT
ATTATGTTTTCTGCACGCCAGGGCGGGAATGATGGACGTCGTCACGAAGA
GGTGTGAGCATCAAGGGTGCAACAAGCGAGCATCACACGGCACGGAAGGC
AAGAAAGCCAAGCTCTGCTCTCAGCACGCCACGGAGGGAATGGCGAACGT
CCTTAGCAAGAGATGCGGGCATCAAGGGTGCAACAAGAGTCCATTGTTCG
GCGTGCGAGGAACGACCACGCCCGAGCTCTGCCAACAGCACGCTGAGGAG
GGAATGGTGAATGTGAAGTACAAGCGATGTGGCCACCGTGGCTGCTCCAA
GGGTGCCTCGCACGGCGTGGAAGGTACCAAGAAGGCAGAGCTCTGCCTAC
AGCATGCGAAGGAGGGCATGGTGAACATCGCCAAGGAGACGTGTGGCCAC
CAAGGGTGCGGCAGAATCCCGTCGTACGGCGTTGAAGGAAGCAAGGCTGA
ATTCTGCTCTCAGCACGCTAGGGAAGGAATGGTAAACGTGGTCGGCATGA
GGTGTGGGCATCCAGGGTGCAATAAGATTCCGTCGTACGGCATGGAAGGT
ACCAGGAAGGTTGAGGTCTGCTCTCATCACGCCACAGAGAGAATGGTGAA
CGTAAAAAGCAGGAGGTGCGGGCACGAAGGGTGCACCACGGGTCCGTCGT
ACGGCGTGGATGGCACCAAGAAAGCTGAGTTCTGCGCCCAGCATGCTAGG
GAGGGAATGGTGGACGTGATCAGCAAGAGGTGTGACCATGGAGGGTGCAC
TAAGCAGCCGTCGTACGGCGTAGAAGGTGCAAAGACGGCCAAATTCTTCT
CTCAGCACGCGAAGAAGGGGGTGGTTGGCGTGAAGAGCAAGAGGTGTGGC
CATCAAGGGTGCACTAAACAACCGTCGTACGGCGTGGAAGGTACCAAGAA
GACTGAACTCTTCTCCCAGCATGCCAGGGAGGGAATGGTGGACGTGCGTA
ACAAGAGGTGTGGGCACCTAGGGTGCAACCAACCAGTGTCCATCGTACGG
AATGAAAGGTACCAAGAAGAGGGAGACCTGCATCCTACACGCCAAGGCGG
GTACGGTGTCCCTGAGAGTGAAGTCGGCCCGCAGCGCGGGTGGAGGTGAA
TGATGCCCAGTAAATGCGCCCACCCAGGGTGCACCACGTGTCCGTCGTAC
GGCGTGAGGGAGGGTACGAAGAAGAAAGCTAATTATGTTTGCAGCATGCC
AGCCAGGAAGGGAATGGTGGACGTGATCAGCAGGAAGTGTGGTCACCATG
GCTGCATCAAACGTGCGAGATATGGTATGGAGGTAACCAAGAAGGCTGTA
TTATGTTTTCTGCACGCCAGGGCGGGAATGATGGACGTCGTCACGAAGAG
GTGTGAGCATCAAGGGTGCAACAAGCGAGCATCACACGGCACGGAAGGCA
AGAAAGCCAAGCTCTGCTCTCAGCACGCCACGGAGGGAATGGCGAACGTC
CTTAGCAAGAGATGCGGGCATCAAGGGTGCAACAAGAGTCCATTGTTCGG
CGTGCGAGGAACGACCACGCCCGAGCTCTGCCAACAGCACGCTGAGGAGG
GAATGGTGAATGTGAAGTACAAGCGATGTGGCCACCGTGGCTGCTCCAAG
GGTGCCTCGCACGGCGTGGAAGGTACCAAGAAGGCAGAGCTCTGCCTACA
GCATGCGAAGGAGGGCATGGTGAACATCGCCAAGGAGACGTGTGGCCACC
AAGGGTGCGGCAGAATCCCGTCGTACGGCGTTGAAGGAAGCAAGGCTGAA
TTCTGCTCTCAGCACGCTAGGGAAGGAATGGTAAACGTGGTCGGCATGAG
GTGTGGGCATCCAGGGTGCAATAAGATTCCGTCGTACGGCATGGAAGGTA
CCAGGAAGGTTGAGGTCTGCTCTCATCACGCCACAGAGAGAATGGTGAAC
GTAAAAAGCAGGAGGTGCGGGCACGAAGGGTGCACCACGGGTCCGTCGTA
CGGCGTGGATGGCACCAAGAAAGCTGAGTTCTGCGCCCAGCATGCTAGGG
AGGGAATGGTGGACGTGATCAGCAAGAGGTGTGACCATGGAGGGTGCACT
AAGCAGCCGTCGTACGGCGTAGAAGGTGCAAAGACGGCCAAATTCTTCTC
TCAGCACGCGAAGAAGGGGGTGGTTGGCGTGAAGAGCAAGAGGTGTGGCC
ATCAAGGGTGCACTAAACAACCGTCGTACGGCGTGGAAGGTACCAAGAAG
ACTGAACTCTTCTCCCAGCATGCCAGGGAGGGAATGGTGGACGTGCGTAA
CAAGAGGTGTGGGCACCTAGGGTGCAACCAACCAGTGTCCATCGTACGGA
ATGAAAGGTACCAAGAAGAGGGAGACCTGCATCCTACACGCCAAGGCGGG
TACGGTGTCCCTGAGAGTGAAGTCGGCCCGCAGCGCGGGTGGAGGTGA
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