Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 2 |
Model size | 2496 |
Cds size | 1299 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622927391.7521136-UTR-C-linearis_contig105:115548..116360 | 1622927391.7521136-UTR-C-linearis_contig105:115548..116360 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig105 115549..116360 - |
1690879672.762031-UTR-C-linearis_contig105:115548..116360 | 1690879672.762031-UTR-C-linearis_contig105:115548..116360 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig105 115549..116360 - |
1622927391.7671025-UTR-C-linearis_contig105:117468..117802 | 1622927391.7671025-UTR-C-linearis_contig105:117468..117802 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig105 117469..117802 - |
1690879672.774581-UTR-C-linearis_contig105:117468..117802 | 1690879672.774581-UTR-C-linearis_contig105:117468..117802 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig105 117469..117802 - |
1622927391.800843-UTR-C-linearis_contig105:119101..119152 | 1622927391.800843-UTR-C-linearis_contig105:119101..119152 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig105 119102..119152 - |
1690879672.8082697-UTR-C-linearis_contig105:119101..119152 | 1690879672.8082697-UTR-C-linearis_contig105:119101..119152 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig105 119102..119152 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622927391.7839315-CDS-C-linearis_contig105:117802..119101 | 1622927391.7839315-CDS-C-linearis_contig105:117802..119101 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig105 117803..119101 - |
1690879672.7953134-CDS-C-linearis_contig105:117802..119101 | 1690879672.7953134-CDS-C-linearis_contig105:117802..119101 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig105 117803..119101 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.936.1 >prot_C-linearis_contig105.936.1 ID=prot_C-linearis_contig105.936.1|Name=mRNA_C-linearis_contig105.936.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=433bp
MMPSKCAHPGCTTCPSYGVREGTKKKANYVCSMPARKGMVDVISRKCGHH GCIKRARYGMEVTKKAVLCFLHARAGMMDVVTKRCEHQGCNKRASHGTEG KKAKLCSQHATEGMANVLSKRCGHQGCNKSPLFGVRGTTTPELCQQHAEE GMVNVKYKRCGHRGCSKGASHGVEGTKKAELCLQHAKEGMVNIAKETCGH QGCGRIPSYGVEGSKAEFCSQHAREGMVNVVGMRCGHPGCNKIPSYGMEG TRKVEVCSHHATERMVNVKSRRCGHEGCTTGPSYGVDGTKKAEFCAQHAR EGMVDVISKRCDHGGCTKQPSYGVEGAKTAKFFSQHAKKGVVGVKSKRCG HQGCTKQPSYGVEGTKKTELFSQHAREGMVDVRNKRCGHLGCNQPVSIVR NERYQEEGDLHPTRQGGYGVPESEVGPQRGWR* back to topmRNA from alignment at C-linearis_contig105:115549..119152- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig105.936.1 ID=mRNA_C-linearis_contig105.936.1|Name=mRNA_C-linearis_contig105.936.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3604bp|location=Sequence derived from alignment at C-linearis_contig105:115549..119152- (Chordaria linearis ClinC8C monoicous) CCCCTATTGACAATCAAACTGCAGAGGCAGGCCCGCCAGAAAAGAAGGGA
AATGATGCCCAGTAAATGCGCCCACCCAGGGTGCACCACGTGTCCGTCGT
ACGGCGTGAGGGAGGGTACGAAGAAGAAAGCTAATTATGTTTGCAGCATG
CCAGCCAGGAAGGGAATGGTGGACGTGATCAGCAGGAAGTGTGGTCACCA
TGGCTGCATCAAACGTGCGAGATATGGTATGGAGGTAACCAAGAAGGCTG
TATTATGTTTTCTGCACGCCAGGGCGGGAATGATGGACGTCGTCACGAAG
AGGTGTGAGCATCAAGGGTGCAACAAGCGAGCATCACACGGCACGGAAGG
CAAGAAAGCCAAGCTCTGCTCTCAGCACGCCACGGAGGGAATGGCGAACG
TCCTTAGCAAGAGATGCGGGCATCAAGGGTGCAACAAGAGTCCATTGTTC
GGCGTGCGAGGAACGACCACGCCCGAGCTCTGCCAACAGCACGCTGAGGA
GGGAATGGTGAATGTGAAGTACAAGCGATGTGGCCACCGTGGCTGCTCCA
AGGGTGCCTCGCACGGCGTGGAAGGTACCAAGAAGGCAGAGCTCTGCCTA
CAGCATGCGAAGGAGGGCATGGTGAACATCGCCAAGGAGACGTGTGGCCA
CCAAGGGTGCGGCAGAATCCCGTCGTACGGCGTTGAAGGAAGCAAGGCTG
AATTCTGCTCTCAGCACGCTAGGGAAGGAATGGTAAACGTGGTCGGCATG
AGGTGTGGGCATCCAGGGTGCAATAAGATTCCGTCGTACGGCATGGAAGG
TACCAGGAAGGTTGAGGTCTGCTCTCATCACGCCACAGAGAGAATGGTGA
ACGTAAAAAGCAGGAGGTGCGGGCACGAAGGGTGCACCACGGGTCCGTCG
TACGGCGTGGATGGCACCAAGAAAGCTGAGTTCTGCGCCCAGCATGCTAG
GGAGGGAATGGTGGACGTGATCAGCAAGAGGTGTGACCATGGAGGGTGCA
CTAAGCAGCCGTCGTACGGCGTAGAAGGTGCAAAGACGGCCAAATTCTTC
TCTCAGCACGCGAAGAAGGGGGTGGTTGGCGTGAAGAGCAAGAGGTGTGG
CCATCAAGGGTGCACTAAACAACCGTCGTACGGCGTGGAAGGTACCAAGA
AGACTGAACTCTTCTCCCAGCATGCCAGGGAGGGAATGGTGGACGTGCGT
AACAAGAGGTGTGGGCACCTAGGGTGCAACCAACCAGTGTCCATCGTACG
GAATGAAAGGTACCAAGAAGAGGGAGACCTGCATCCTACACGCCAAGGCG
GGTACGGTGTCCCTGAGAGTGAAGTCGGCCCGCAGCGCGGGTGGAGGTGA
TGGAAGCGGTGGGCGTGAGCGCTTGCATGGCGAGACTGATGTGGATGCCT
CCGTCCGCCGATCGGCGACGAAGAAACGATCGCTACAGGCTGACGCTGAT
CCTCTGATGCCCGTCGCTGTCAAGACAGAGCAAAAACGTGACGAAGGGAT
GGGGAGTCACAACCACACGGAACGACAAGCGAGCCCGCCGGATCGGATTC
ACCCCGTCGGTCCCAGCGGCAGTCAAAGCAGAGGCTATACGGAAAAGGGC
GGCCATCCATGCGACGAACTTGTCCTCGGAGTCAGAGCCGGAGGTGGAAC
CGGAGGCCGGAGTGGCCGTTTCGACCTAGACAAGGTGCGAAAGCCAGGTG
GCTGAAGGTGCGAAGGAGCGCTTGCAACACGTGCTCTTCGGTACTTCTCA
GTATTTAGTTGTATTTTTGGCCTTCCAATGGATACTTTCCCATTTCCCCA
TCCCACTTGCTATCGTCGTATGTGATGGGCAGTACACGATTCACCACTCA
CTGTGTAGTACTTTCGGCATATCTTTGGAACTCTAGTTGGTTTGTTGGTG
TTCGTTTAAGCGAAAGTGGTCTATAATAACAGGTAGCGTCCGTCCAATCT
CCAGGTGTCGCTATTCTTTGATTTTGTCGCGTTTTCTCGCACACGTCACC
AGAGCATCGTTGCCGCTCTCCGTCTCGGTCCATACGGACGTCATTTAGAA
GATAAATGCTGCGCTTTCTTCGTGTTGCCCCAATAGTCCAAGTAGCTTCA
CTGCCGCACTCCTTTTTCTTTCGGTGTTGCTGCCGCCGCCGCTACGACAC
GACGCTGTTTGCGCGCACTCTAAAGCACCCAGGCTGGACATTTCCTTTTC
TTTGTGCACGGTTCAACGATTGGTTGTCGGCGGGGCTTCGTTGTGCTAAA
TTACCACCTCTGGCTTTAATATTTGTGCCCCAGAGCGCGTCAACCTGCCG
TTGAGTGTTGTTGTTGTGGGACGATGGTTTCAAACTCGAGCATGGCCAAA
CTTTCCGGGGCTCACGCTACGCGTATTTTTTCGCACGCTGTCTGGGCAAG
GGGCGCGAAGCTACTCTGTGAAGCGCATAGAAGTACTATGCAACTCTCCC
GGTGTACAGGGCTTCTACTCATCCACACATGCGTGTATGCCATCGTTTCA
GCCGTTGACTTGCCGGAAAACATAGGCTTGAACGACACTCGGTGTAATAC
GGTTTGATGATGAAACGCGCCAAAAGAACAATCCTCTTCGTTTTGCCTCC
GGAATCGGAACCGTCGGGGCCGAACTTCCGCATTTGAAACGATTTGGACT
TGCTTTTTTGTGGTGGGGGTGTGGGCAACTCCAGCCGGAGGGGCGACCTT
GTCCTCAGTTCCATGTTCAACTACGCACCGGATATCGCTAACCCATCCGC
CCCAACCGATTGTTTGCTCTTGCCATTGCTGCTCTCAACCAGATGATATG
GAGTGAAGAGGAAACCCGACTGTCACGATGTGTGTTGCCCTCTTCTTCTC
TTCTTGCGACAGCTTCCTGCCTTGCCATGTTGTTGTGTGAGCGACACCTT
AGTTTTTCCGTTTGCCGCTTCGCAGAAAAGTGGCTTGTGACCCAATAGGA
TACATGAGATCATCGTTATTTTTGTTGTTTTCATAGGCATGAACGAGTTA
TGTTCGCTTGTTCTCCGTGCTACATTATCGGCGCACCCGCGGTGGTGTTG
GAGGGAAGAGGCACGCGAGGATTGGTGGGGCAGTGAGAGGGTAGAGACGT
GTAGTAGGTGGTCGGCGTTTCTTGATCCCGGTGAAGTTGCGGAAACTTAC
GTGCTTGCATACACAGGATGTGCGAAATGGTTATCTCTTCGAATCTTCTC
GCGAGCGCAAGGATAGCTAGGCTTCGCCATTGTTCTTACGTACCAGGTAC
CTGGTGGCATTTGTCGTGTTTTTTTTCTTGTGCTGGTGTTGCTTGGTCCT
TGGGTCGCCAGTCAAAGCCTTCATTTTGTTGTCCCGTTTCCCGGTTTCAA
CCTGTTCCGTGAGCTTTCTGTTTTTGTTGTTGTACTTGTTGGTTTTCGAT
GTTGTTTGCATTGTGGTGTGGGGAGGTGGTGCTACGCGCTGCATCTAGAG
GATTGTTGTTTGGAAGAATGTTGGCGATGGAGTATGTGACCGTTGACAAT
TGCTTTCTTCCATGTTTGGACCAGTTGGTTGATGGGCGACTTCGAAGTGG
GGACGGGTCTGTTGTTGCGCATAATTTTATCGATGCAACAAGCAAGTTCG
CACC back to topCoding sequence (CDS) from alignment at C-linearis_contig105:115549..119152- >mRNA_C-linearis_contig105.936.1 ID=mRNA_C-linearis_contig105.936.1|Name=mRNA_C-linearis_contig105.936.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2598bp|location=Sequence derived from alignment at C-linearis_contig105:115549..119152- (Chordaria linearis ClinC8C monoicous) ATGATGCCCAGTAAATGCGCCCACCCAGGGTGCACCACGTGTCCGTCGTA CGGCGTGAGGGAGGGTACGAAGAAGAAAGCTAATTATGTTTGCAGCATGC CAGCCAGGAAGGGAATGGTGGACGTGATCAGCAGGAAGTGTGGTCACCAT GGCTGCATCAAACGTGCGAGATATGGTATGGAGGTAACCAAGAAGGCTGT ATTATGTTTTCTGCACGCCAGGGCGGGAATGATGGACGTCGTCACGAAGA GGTGTGAGCATCAAGGGTGCAACAAGCGAGCATCACACGGCACGGAAGGC AAGAAAGCCAAGCTCTGCTCTCAGCACGCCACGGAGGGAATGGCGAACGT CCTTAGCAAGAGATGCGGGCATCAAGGGTGCAACAAGAGTCCATTGTTCG GCGTGCGAGGAACGACCACGCCCGAGCTCTGCCAACAGCACGCTGAGGAG GGAATGGTGAATGTGAAGTACAAGCGATGTGGCCACCGTGGCTGCTCCAA GGGTGCCTCGCACGGCGTGGAAGGTACCAAGAAGGCAGAGCTCTGCCTAC AGCATGCGAAGGAGGGCATGGTGAACATCGCCAAGGAGACGTGTGGCCAC CAAGGGTGCGGCAGAATCCCGTCGTACGGCGTTGAAGGAAGCAAGGCTGA ATTCTGCTCTCAGCACGCTAGGGAAGGAATGGTAAACGTGGTCGGCATGA GGTGTGGGCATCCAGGGTGCAATAAGATTCCGTCGTACGGCATGGAAGGT ACCAGGAAGGTTGAGGTCTGCTCTCATCACGCCACAGAGAGAATGGTGAA CGTAAAAAGCAGGAGGTGCGGGCACGAAGGGTGCACCACGGGTCCGTCGT ACGGCGTGGATGGCACCAAGAAAGCTGAGTTCTGCGCCCAGCATGCTAGG GAGGGAATGGTGGACGTGATCAGCAAGAGGTGTGACCATGGAGGGTGCAC TAAGCAGCCGTCGTACGGCGTAGAAGGTGCAAAGACGGCCAAATTCTTCT CTCAGCACGCGAAGAAGGGGGTGGTTGGCGTGAAGAGCAAGAGGTGTGGC CATCAAGGGTGCACTAAACAACCGTCGTACGGCGTGGAAGGTACCAAGAA GACTGAACTCTTCTCCCAGCATGCCAGGGAGGGAATGGTGGACGTGCGTA ACAAGAGGTGTGGGCACCTAGGGTGCAACCAACCAGTGTCCATCGTACGG AATGAAAGGTACCAAGAAGAGGGAGACCTGCATCCTACACGCCAAGGCGG GTACGGTGTCCCTGAGAGTGAAGTCGGCCCGCAGCGCGGGTGGAGGTGAA TGATGCCCAGTAAATGCGCCCACCCAGGGTGCACCACGTGTCCGTCGTAC GGCGTGAGGGAGGGTACGAAGAAGAAAGCTAATTATGTTTGCAGCATGCC AGCCAGGAAGGGAATGGTGGACGTGATCAGCAGGAAGTGTGGTCACCATG GCTGCATCAAACGTGCGAGATATGGTATGGAGGTAACCAAGAAGGCTGTA TTATGTTTTCTGCACGCCAGGGCGGGAATGATGGACGTCGTCACGAAGAG GTGTGAGCATCAAGGGTGCAACAAGCGAGCATCACACGGCACGGAAGGCA AGAAAGCCAAGCTCTGCTCTCAGCACGCCACGGAGGGAATGGCGAACGTC CTTAGCAAGAGATGCGGGCATCAAGGGTGCAACAAGAGTCCATTGTTCGG CGTGCGAGGAACGACCACGCCCGAGCTCTGCCAACAGCACGCTGAGGAGG GAATGGTGAATGTGAAGTACAAGCGATGTGGCCACCGTGGCTGCTCCAAG GGTGCCTCGCACGGCGTGGAAGGTACCAAGAAGGCAGAGCTCTGCCTACA GCATGCGAAGGAGGGCATGGTGAACATCGCCAAGGAGACGTGTGGCCACC AAGGGTGCGGCAGAATCCCGTCGTACGGCGTTGAAGGAAGCAAGGCTGAA TTCTGCTCTCAGCACGCTAGGGAAGGAATGGTAAACGTGGTCGGCATGAG GTGTGGGCATCCAGGGTGCAATAAGATTCCGTCGTACGGCATGGAAGGTA CCAGGAAGGTTGAGGTCTGCTCTCATCACGCCACAGAGAGAATGGTGAAC GTAAAAAGCAGGAGGTGCGGGCACGAAGGGTGCACCACGGGTCCGTCGTA CGGCGTGGATGGCACCAAGAAAGCTGAGTTCTGCGCCCAGCATGCTAGGG AGGGAATGGTGGACGTGATCAGCAAGAGGTGTGACCATGGAGGGTGCACT AAGCAGCCGTCGTACGGCGTAGAAGGTGCAAAGACGGCCAAATTCTTCTC TCAGCACGCGAAGAAGGGGGTGGTTGGCGTGAAGAGCAAGAGGTGTGGCC ATCAAGGGTGCACTAAACAACCGTCGTACGGCGTGGAAGGTACCAAGAAG ACTGAACTCTTCTCCCAGCATGCCAGGGAGGGAATGGTGGACGTGCGTAA CAAGAGGTGTGGGCACCTAGGGTGCAACCAACCAGTGTCCATCGTACGGA ATGAAAGGTACCAAGAAGAGGGAGACCTGCATCCTACACGCCAAGGCGGG TACGGTGTCCCTGAGAGTGAAGTCGGCCCGCAGCGCGGGTGGAGGTGA back to top
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