Homology
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match:
A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)
HSP 1 Score: 195 bits (496), Expect = 1.710e-56
Identity = 100/176 (56.82%), Postives = 126/176 (71.59%), Query Frame = 1
Query: 697 AVVGRYPSTHSQV*SLLEHVEMAGGVLDWCGGINDAVCAVLTESSFGVATNDFDGRVVADSHMDATTNAFAEAFGEGVRRPEWVVTSPPYKHAFPILKHALRIGRVGVAFKLRLTFLEPTKSRGQWLKDNPPHSIVMLSRATYRGRKCSSTEAWFLWR--SGGVDREESKRPAFFF 1218
A GR H +V +LL +V++AGGVLD CG +DA+ VL S V+TNDF+ R+ AD+H+DAT+ F F +RP+W+VTSPPY +AF IL AL + RVGVAFKLRL+FLEPTK+RG+WLKDNPP ++V+L RATY GR CSSTEAWF+W S GV+R AFFF
Sbjct: 5 AACGRV--VHGKVDALLLNVKLAGGVLDACGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWHLASDGVERPGQ---AFFF 175
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match:
A0A6H5L5Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q9_9PHAE)
HSP 1 Score: 114 bits (286), Expect = 2.390e-25
Identity = 55/71 (77.46%), Postives = 57/71 (80.28%), Query Frame = -1
Query: 862 PLPPAFCGLKESQPQLECHSHTPNPQSVFQNRECVLVRRARHDPLRAPHSLAEGLRKSVRGGIHMTVCDHP 1074
PLP F GLK+SQPQLECH HTPNPQS FQN E VLV RARHDPLRAP LAEG+ K VR GIHMTVCD P
Sbjct: 172 PLPSGFGGLKKSQPQLECHPHTPNPQSTFQNSEGVLVWRARHDPLRAPPFLAEGIHKCVRRGIHMTVCDQP 242
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match:
D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI)
HSP 1 Score: 101 bits (251), Expect = 1.180e-21
Identity = 56/131 (42.75%), Postives = 72/131 (54.96%), Query Frame = 1
Query: 784 CGGINDAVCAVLTESSFGVATNDFDGRVVADSHMDATTNAFAEAF--GEGVRRPEWVVTSPPYKHAFPILKHALRIGRVGVAFKLRLTFLEPTKSRGQWLKDNPPHSIVMLSRATY-RGRKCSSTEAWFLW 1167
CGG DAV L S+ + TND AD++++A+ F E F +RPEWVVTSPPY A +K A+ + GVAFK+ + FLEP RG WL+ NPP V L RA Y R + E W +W
Sbjct: 2 CGGPTDAVATRL-RSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVW 131
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match:
A0A6H5KE39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE39_9PHAE)
HSP 1 Score: 99.0 bits (245), Expect = 2.420e-21
Identity = 54/106 (50.94%), Postives = 59/106 (55.66%), Query Frame = 3
Query: 348 MRRGPRASCGRVVHGKRTAEGGLPLCFACDRPGSRETCSRKWNHVGDTEYWEEVSEWSAKVGVEGGVTRETSGKILSRWESASVPGPTASLI*PRVQVAPPEARER 665
M RG SCGR VHGK GGL LCFAC RPGSR+ CS +W HVG T YW EV EWSA VG E R+ G L E A I +VQ A E R+R
Sbjct: 1 MTRGFLGSCGRAVHGKEAPGGGLGLCFACGRPGSRDGCSSRWKHVGQTTYWAEVGEWSAMVGQEWPHERDLQGDPLKVGECICTRPDCAGGIVQKVQEALREGRKR 106
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match:
A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE)
HSP 1 Score: 100 bits (250), Expect = 1.400e-20
Identity = 51/65 (78.46%), Postives = 53/65 (81.54%), Query Frame = -2
Query: 882 SHCPLLFVGSRKVSLSLNATPTRPILRACFKIGNACLYGGLVTTHSGRRTPSPKASAKAFVVASI 1076
SHCPL+ VGSRKVSLSLNATPTRPIL+A FKI ACLYGGLVTTHSGRR S K S VVASI
Sbjct: 172 SHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGRRPSSQKVSTNVSVVASI 236
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match:
A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE)
HSP 1 Score: 95.1 bits (235), Expect = 1.420e-20
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1
Query: 1012 VGVAFKLRLTFLEPTKSRGQWLKDNPPHSIVMLSRATYRGRKCSSTEAWFLWRSGG 1179
+GVAFKLRLTFL P KSRG+WLKDNPP IVML RATYR R+CSSTE WF+W + G
Sbjct: 1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWETRG 56
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match:
D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)
HSP 1 Score: 99.0 bits (245), Expect = 4.820e-20
Identity = 60/143 (41.96%), Postives = 82/143 (57.34%), Query Frame = 1
Query: 703 VGRYPSTHSQV*SLLEHVEMAGGVLDWCGGINDAVCAVLTESSFGVATNDFD-----GRVVADSHMDATTNAFAEAF--GEGVRRPEWVVTSPPYKHAFPILKHALRIGRVGVAFKLRLTFLEPTKSRGQWLKDNPPHSIVML 1110
+ RY ++ V +LL VE+ G VLD CGG DA+ L ++ V TND G + D+++DA+ +FA F + +RP+WV+TSPPYK A +K AL + GVA KL L+FLEP RG WL+ NPP V
Sbjct: 80 LDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLG-ATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match:
A0A252D8B1_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=A0A252D8B1_9NOSO)
HSP 1 Score: 97.4 bits (241), Expect = 5.850e-20
Identity = 61/159 (38.36%), Postives = 92/159 (57.86%), Query Frame = 1
Query: 712 YPSTHSQV*SLLEHVEMAGGVLDWCGGINDAVCAVLTESSFGVATNDFDGRVVADSHMD-ATTNAFAEAFGEGVRRP-EWVVTSPPYKHAFPILKHALRIGRVGVAFKLRLTFLEPTKSRGQWLKDNPPHSIVMLSRATYRG--RKCSSTEAWFLWRSG 1176
Y + S V +LL H+++ G +L+ C G + A+ L E V T D +AD+ D ATT+ + + ++P +WVVT+PP+ A IL A VGVAF LRL++LEP K RGQWL ++PP +++L R ++ G + S T AW +W+ G
Sbjct: 19 YFTPTSAVDTLLNHIDITGTLLEPCNG-SGAISNRLKEDGLSVITTD-----IADNPQDDATTHQYWQR-----QKPYDWVVTNPPFDSASKILPKAYEYASVGVAFLLRLSYLEPCKDRGQWLAEHPP-KLIVLPRISFTGDGKVDSCTCAWMIWKKG 165
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match:
A0A6H5KU02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU02_9PHAE)
HSP 1 Score: 87.4 bits (215), Expect = 1.040e-15
Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 1
Query: 871 ADSHMDATTNAFAEAF--GEGVRRPEWVVTSPPYKHAFPILKHALRIGRVGVAFKLRLTFLEPTKSRGQWLKDNPPHSIVMLSRATY-RGRKCSSTEAWFLWRSGGVDREESKRPAF 1212
AD+++DA+ +F E F +RPEWVVTSPPY A +K A+ + GV FK+ ++ LEP RG WL+ NPP + L RA Y R E W +W + V R F
Sbjct: 137 ADTNLDASLESFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVEFKMPISCLEPCADRGGWLQTNPPSVCLFLRRAKYTRANNAKMGEFWGVWYTQEVSCRNKTRLVF 253
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match:
A0A433N1N0_CHLFR (Uncharacterized protein n=1 Tax=Chlorogloeopsis fritschii PCC 6912 TaxID=211165 RepID=A0A433N1N0_CHLFR)
HSP 1 Score: 77.4 bits (189), Expect = 1.210e-12
Identity = 59/162 (36.42%), Postives = 82/162 (50.62%), Query Frame = 1
Query: 712 YPSTHSQV*SLLEHVEMAGGV--LDWCGGINDAVCAVLTESSFGVATNDFDGRV-VADSHMDATTNAFAEAFGEGVRRPEWVVTSPPYKHAFPILKHALRIGRVGVAFKLRLTFLEPTKSRGQWL---KDNPPHSIVM-LSRATYRG--RKCSSTEAWFLWR 1170
YP+ LLE V++ GV L+ C G D + VL + GV +D + + DAT F + +R EWV+T+PP+ A IL A + VGV F LRL++LEPTK+RG W DN + I+ R ++ G R S T AW +WR
Sbjct: 18 YPTPAQLTHKLLEVVDIDPGVTILEPCAGEGD-ILNVLQYYNVGVVASDISWQPHPGQTTTDATERLFWHYWKNRLRF-EWVITNPPFNEASAILPLAYKHASVGVCFLLRLSYLEPTKARGDWFLEHMDNMSNLIIFGQPRPSFTGDRRVDSVTTAWMVWR 177
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 15
0 1 Expect = 1.71e-56 / Id = 56.82 Expect = 2.39e-25 / Id = 77.46 Expect = 1.18e-21 / Id = 42.75 Expect = 2.42e-21 / Id = 50.94 Expect = 1.40e-20 / Id = 78.46 Expect = 1.42e-20 / Id = 75.00 Expect = 4.82e-20 / Id = 41.96 Expect = 5.85e-20 / Id = 38.36 Expect = 1.04e-15 / Id = 39.32 Expect = 1.21e-12 / Id = 36.42 Sequence A0A6H5K3H5_9PHAE A0A6H5L5Q9_9PHAE D8LSI1_ECTSI A0A6H5KE39_9PHAE A0A6H5L6X2_9PHAE A0A6H5K6T5_9PHAE D7FJU4_ECTSI A0A252D8B1_9NOSO A0A6H5KU02_9PHAE A0A433N1N0_CHLFR Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Bacteria Seed ortholog score 72.4 Seed ortholog evalue 2.1e-10 Seed eggNOG ortholog 211165.AJLN01000060_gene3855 Preferred name ksgA KEGG rclass RC00003,RC03257 KEGG ko ko:K02528,ko:K20444 KEGG TC 4.D.1.3 KEGG Reaction R10716 Hectar predicted targeting category other localisation GOs GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 EggNOG free text desc. rRNA (adenine-N6,N6-)-dimethyltransferase activity EggNOG OGs COG0030@1,COG0030@2 EC 2.1.1.182 COG Functional cat. J CAZy GT2,GT4 Best tax level Bacteria Best eggNOG OG NA|NA|NA BRITE ko00000,ko01000,ko01005,ko02000,ko03009 Exons 3 Model size 1518 Cds size 474 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927392.8326476-UTR-C-linearis_contig105:77477..77762 1622927392.8326476-UTR-C-linearis_contig105:77477..77762 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig105 77478..77762 - 1690879673.4712975-UTR-C-linearis_contig105:77477..77762 1690879673.4712975-UTR-C-linearis_contig105:77477..77762 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig105 77478..77762 - 1622927392.8714728-UTR-C-linearis_contig105:78504..78524 1622927392.8714728-UTR-C-linearis_contig105:78504..78524 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig105 78505..78524 - 1690879673.504733-UTR-C-linearis_contig105:78504..78524 1690879673.504733-UTR-C-linearis_contig105:78504..78524 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig105 78505..78524 - 1622927392.8827364-UTR-C-linearis_contig105:79103..79842 1622927392.8827364-UTR-C-linearis_contig105:79103..79842 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig105 79104..79842 - 1690879673.5148706-UTR-C-linearis_contig105:79103..79842 1690879673.5148706-UTR-C-linearis_contig105:79103..79842 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig105 79104..79842 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927392.847004-CDS-C-linearis_contig105:77762..78132 1622927392.847004-CDS-C-linearis_contig105:77762..78132 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig105 77763..78132 - 1690879673.4840868-CDS-C-linearis_contig105:77762..78132 1690879673.4840868-CDS-C-linearis_contig105:77762..78132 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig105 77763..78132 - 1622927392.860692-CDS-C-linearis_contig105:78400..78504 1622927392.860692-CDS-C-linearis_contig105:78400..78504 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig105 78401..78504 - 1690879673.4956212-CDS-C-linearis_contig105:78400..78504 1690879673.4956212-CDS-C-linearis_contig105:78400..78504 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig105 78401..78504 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.933.1
>prot_C-linearis_contig105.933.1 ID=prot_C-linearis_contig105.933.1|Name=mRNA_C-linearis_contig105.933.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=158bp
MAGGVLDWCGGINDAVCAVLTESSFGVATNDFDGRVVADSHMDATTNAFA back to top mRNA from alignment at C-linearis_contig105:77478..79842-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig105.933.1 ID=mRNA_C-linearis_contig105.933.1|Name=mRNA_C-linearis_contig105.933.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2365bp|location=Sequence derived from alignment at C-linearis_contig105:77478..79842- (Chordaria linearis ClinC8C monoicous)TAGCCGCCACCCACTGCTGTATGTTAGGCACCCAGCAGTGCCTCGAATCA
CTTTGCTACTCCACTTCAGGGTTTGGTCCAAAAAATTCGGTTAGGGTTAT
AGCTCTGTGAGGGCATACCAGACCTGTCTGAGACCATATTTTGGACACGC
GGAACAACTCGGTGCGGCCGACAGCAGCAGCCCACGTTACTGGGGTACCC
AATTGCAGCTGCTGTCAGGTGGGGGTAACTGTAGCAGAAGTCTTGCAGTT
TGGTCAGGTCAAAGGTTTTTTTGATCACTCTCTGTGGGCGACGAAACCGG
TGATTCGGTCAGCAGCTGGAAATCGCCATGTTCAACGTTTTTTCGGCATG
CGGCGGGGTCCTCGAGCCTCCTGTGGCAGAGTTGTGCATGGCAAACGAAC
GGCAGAGGGGGGGCTTCCGCTATGCTTCGCATGCGACCGCCCCGGCAGTC
GTGAAACGTGCTCCCGGAAGTGGAACCACGTAGGGGATACCGAGTATTGG
GAAGAAGTGAGCGAGTGGTCTGCGAAAGTAGGGGTAGAGGGTGGCGTCAC
GCGCGAAACCTCCGGCAAGATCCTCTCACGATGGGAGAGTGCATCTGTTC
CCGGCCCGACTGCGTCGCTAATATGACCGCGTGTTCAAGTGGCACCGCCA
GAAGCAAGAGAGCGGGGGGCAAAAGAAGATGGAGCTCGGACAGAAAGCAG
TGGTGGGCCGGTACCCGTCGACGCACTCTCAGGTGTGAT GCCATGGTCAT
GTTTAGGATCGTAAGGTGTCCCCTCCAGCAGCTGTAGAGCCGCACCAGTT
TGTACACCATGTATGCATGCAACACCGCAGCAGTTGCGGCGCCGGAGATA
AGAAAATTAATTTAGGGTAGTGGGGCTTAATTAGGTAGTTCGGGAGCAAA
CACCAGCACAAGTAGGATAATTTCTTGTATGTGCTAATTTCGACGTTTAC
TTGTAGCCTTGTCGGTGCACTAAACAGCAGTGGCGTGGCGCAGGTCGGCT
TCAAAGCTCAAAAACACTCGAAACACGTAAAACCAGCCCCGCCCCCCCCA
GAGTAACATGTGCACACATCCTTTCTACAAGGGCAGCAGCAGAATTCCGT
CCCTTTTCTGGAGCCGCTTCCGCACCTTTGTTTCAGCAGTTCCCAAGTGT
GTTTACGGGATCCACGGGACGACACCGGCGACAACAACGCCATCGCGATG
AACAATGCACGACGCTGAACGTCCGGGTAGATGGCAGATACGAATCTCAA
TCTCAGGCGTTCACTGCGTTTTTGAAAAACAAACATTTTTCTCGACGGAA
CGCGAATTCAGGTGCGAGCTCTTCTGGAACACGTGGAG ATGGCAGGCGGC
GTGCTTGATTGGTGTGGCGGCATCAACGATGCAGTTTGCGCCGTGCTGAC
GGAAAGCAGTTTCGGTGTGGCAACCAACGACTTCGATGGCAG GTACGTGG
ATTTCAGATTGTCTACTTGTATGGTGTCCTCCGTTGTATCCTTTTGTAGC
AATATTTTAAGACAACGAGCTTGGTGAGCCTTGTGGCAAAAATTCAAAGG
TACATGTAGTTTAGAAGCAACATCTGCGGTGGCTTGGCGGCGGTGCACTA
TTCGAAATTTGAAGTCGGTCCGTGCTGTCAGGTGTGATGTGTGTCCATAA
ATAAATTTCGGTCGTAAACCTGCCCCTTTTCCGCCTTAACCTGGTCCTTT
CCCCCTTCAGGGTGGTCGCAGACAGTCATATGGATGCCACCACGAACGCT
TTTGCGGAGGCCTTCGGCGAGGGAGTGCGGCGCCCGGAGTGGGTCGTGAC
GAGCCCGCCGTACAAGCACGCATTCCCTATTTTGAAACACGCTCTGAGGA
TTGGGCGTGTGGGAGTGGCATTCAAGCTGAGGCTGACTTTCCTTGAGCCC
ACAAAAAGCAGGGGGCAGTGGCTAAAGGACAACCCACCCCATAGTATTGT
AATGCTCTCCCGCGCAACCTACCGGGGTAGAAAGTGTAGCTCTACGGAGG
CGTGGTTTTTATGGCGGAGTGGAGGGGTGGATAGAGAAGAAAGCAAAAGG
CCAGCGTTTTTCTTTTCCTTGCCCGTGTAG GATCTGAAGTCTTCGGGAAT
TTTCTCCGTAGGACGGATGAGAAGTACCCAAGTATGAAGAGGTGTCGAAT
GCTGCACAATGTTGACAAAATGCACACATCGTTTAAGGGTGCAAGTTGTT
TGTTTCCCCCCCCGTCGATATTATAATGCGACAGACGACAGGTGTGGAAT
TATTTCTTCATGCGTAGCCTATGTGGCGGATGTTGTGGACATACAGCGAA
ATGGACGGGGCGGCGGTCGCAACTTAGCACGTACTCTGTGATGGGGGGGG
GAGCTATGTACGAGG back to top Coding sequence (CDS) from alignment at C-linearis_contig105:77478..79842-
>mRNA_C-linearis_contig105.933.1 ID=mRNA_C-linearis_contig105.933.1|Name=mRNA_C-linearis_contig105.933.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at C-linearis_contig105:77478..79842- (Chordaria linearis ClinC8C monoicous) back to top