mRNA_C-linearis_contig105.933.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE) HSP 1 Score: 195 bits (496), Expect = 1.710e-56 Identity = 100/176 (56.82%), Postives = 126/176 (71.59%), Query Frame = 1 Query: 697 AVVGRYPSTHSQV*SLLEHVEMAGGVLDWCGGINDAVCAVLTESSFGVATNDFDGRVVADSHMDATTNAFAEAFGEGVRRPEWVVTSPPYKHAFPILKHALRIGRVGVAFKLRLTFLEPTKSRGQWLKDNPPHSIVMLSRATYRGRKCSSTEAWFLWR--SGGVDREESKRPAFFF 1218
A GR H +V +LL +V++AGGVLD CG +DA+ VL S V+TNDF+ R+ AD+H+DAT+ F F +RP+W+VTSPPY +AF IL AL + RVGVAFKLRL+FLEPTK+RG+WLKDNPP ++V+L RATY GR CSSTEAWF+W S GV+R AFFF
Sbjct: 5 AACGRV--VHGKVDALLLNVKLAGGVLDACGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWHLASDGVERPGQ---AFFF 175
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match: A0A6H5L5Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q9_9PHAE) HSP 1 Score: 114 bits (286), Expect = 2.390e-25 Identity = 55/71 (77.46%), Postives = 57/71 (80.28%), Query Frame = -1 Query: 862 PLPPAFCGLKESQPQLECHSHTPNPQSVFQNRECVLVRRARHDPLRAPHSLAEGLRKSVRGGIHMTVCDHP 1074
PLP F GLK+SQPQLECH HTPNPQS FQN E VLV RARHDPLRAP LAEG+ K VR GIHMTVCD P
Sbjct: 172 PLPSGFGGLKKSQPQLECHPHTPNPQSTFQNSEGVLVWRARHDPLRAPPFLAEGIHKCVRRGIHMTVCDQP 242
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI) HSP 1 Score: 101 bits (251), Expect = 1.180e-21 Identity = 56/131 (42.75%), Postives = 72/131 (54.96%), Query Frame = 1 Query: 784 CGGINDAVCAVLTESSFGVATNDFDGRVVADSHMDATTNAFAEAF--GEGVRRPEWVVTSPPYKHAFPILKHALRIGRVGVAFKLRLTFLEPTKSRGQWLKDNPPHSIVMLSRATY-RGRKCSSTEAWFLW 1167
CGG DAV L S+ + TND AD++++A+ F E F +RPEWVVTSPPY A +K A+ + GVAFK+ + FLEP RG WL+ NPP V L RA Y R + E W +W
Sbjct: 2 CGGPTDAVATRL-RSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVW 131
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match: A0A6H5KE39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE39_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 2.420e-21 Identity = 54/106 (50.94%), Postives = 59/106 (55.66%), Query Frame = 3 Query: 348 MRRGPRASCGRVVHGKRTAEGGLPLCFACDRPGSRETCSRKWNHVGDTEYWEEVSEWSAKVGVEGGVTRETSGKILSRWESASVPGPTASLI*PRVQVAPPEARER 665
M RG SCGR VHGK GGL LCFAC RPGSR+ CS +W HVG T YW EV EWSA VG E R+ G L E A I +VQ A E R+R
Sbjct: 1 MTRGFLGSCGRAVHGKEAPGGGLGLCFACGRPGSRDGCSSRWKHVGQTTYWAEVGEWSAMVGQEWPHERDLQGDPLKVGECICTRPDCAGGIVQKVQEALREGRKR 106
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE) HSP 1 Score: 100 bits (250), Expect = 1.400e-20 Identity = 51/65 (78.46%), Postives = 53/65 (81.54%), Query Frame = -2 Query: 882 SHCPLLFVGSRKVSLSLNATPTRPILRACFKIGNACLYGGLVTTHSGRRTPSPKASAKAFVVASI 1076
SHCPL+ VGSRKVSLSLNATPTRPIL+A FKI ACLYGGLVTTHSGRR S K S VVASI
Sbjct: 172 SHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGRRPSSQKVSTNVSVVASI 236
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 1.420e-20 Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1 Query: 1012 VGVAFKLRLTFLEPTKSRGQWLKDNPPHSIVMLSRATYRGRKCSSTEAWFLWRSGG 1179
+GVAFKLRLTFL P KSRG+WLKDNPP IVML RATYR R+CSSTE WF+W + G
Sbjct: 1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWETRG 56
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 4.820e-20 Identity = 60/143 (41.96%), Postives = 82/143 (57.34%), Query Frame = 1 Query: 703 VGRYPSTHSQV*SLLEHVEMAGGVLDWCGGINDAVCAVLTESSFGVATNDFD-----GRVVADSHMDATTNAFAEAF--GEGVRRPEWVVTSPPYKHAFPILKHALRIGRVGVAFKLRLTFLEPTKSRGQWLKDNPPHSIVML 1110
+ RY ++ V +LL VE+ G VLD CGG DA+ L ++ V TND G + D+++DA+ +FA F + +RP+WV+TSPPYK A +K AL + GVA KL L+FLEP RG WL+ NPP V
Sbjct: 80 LDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLG-ATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match: A0A252D8B1_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=A0A252D8B1_9NOSO) HSP 1 Score: 97.4 bits (241), Expect = 5.850e-20 Identity = 61/159 (38.36%), Postives = 92/159 (57.86%), Query Frame = 1 Query: 712 YPSTHSQV*SLLEHVEMAGGVLDWCGGINDAVCAVLTESSFGVATNDFDGRVVADSHMD-ATTNAFAEAFGEGVRRP-EWVVTSPPYKHAFPILKHALRIGRVGVAFKLRLTFLEPTKSRGQWLKDNPPHSIVMLSRATYRG--RKCSSTEAWFLWRSG 1176
Y + S V +LL H+++ G +L+ C G + A+ L E V T D +AD+ D ATT+ + + ++P +WVVT+PP+ A IL A VGVAF LRL++LEP K RGQWL ++PP +++L R ++ G + S T AW +W+ G
Sbjct: 19 YFTPTSAVDTLLNHIDITGTLLEPCNG-SGAISNRLKEDGLSVITTD-----IADNPQDDATTHQYWQR-----QKPYDWVVTNPPFDSASKILPKAYEYASVGVAFLLRLSYLEPCKDRGQWLAEHPP-KLIVLPRISFTGDGKVDSCTCAWMIWKKG 165
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match: A0A6H5KU02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU02_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 1.040e-15 Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 1 Query: 871 ADSHMDATTNAFAEAF--GEGVRRPEWVVTSPPYKHAFPILKHALRIGRVGVAFKLRLTFLEPTKSRGQWLKDNPPHSIVMLSRATY-RGRKCSSTEAWFLWRSGGVDREESKRPAF 1212
AD+++DA+ +F E F +RPEWVVTSPPY A +K A+ + GV FK+ ++ LEP RG WL+ NPP + L RA Y R E W +W + V R F
Sbjct: 137 ADTNLDASLESFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVEFKMPISCLEPCADRGGWLQTNPPSVCLFLRRAKYTRANNAKMGEFWGVWYTQEVSCRNKTRLVF 253
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match: A0A433N1N0_CHLFR (Uncharacterized protein n=1 Tax=Chlorogloeopsis fritschii PCC 6912 TaxID=211165 RepID=A0A433N1N0_CHLFR) HSP 1 Score: 77.4 bits (189), Expect = 1.210e-12 Identity = 59/162 (36.42%), Postives = 82/162 (50.62%), Query Frame = 1 Query: 712 YPSTHSQV*SLLEHVEMAGGV--LDWCGGINDAVCAVLTESSFGVATNDFDGRV-VADSHMDATTNAFAEAFGEGVRRPEWVVTSPPYKHAFPILKHALRIGRVGVAFKLRLTFLEPTKSRGQWL---KDNPPHSIVM-LSRATYRG--RKCSSTEAWFLWR 1170
YP+ LLE V++ GV L+ C G D + VL + GV +D + + DAT F + +R EWV+T+PP+ A IL A + VGV F LRL++LEPTK+RG W DN + I+ R ++ G R S T AW +WR
Sbjct: 18 YPTPAQLTHKLLEVVDIDPGVTILEPCAGEGD-ILNVLQYYNVGVVASDISWQPHPGQTTTDATERLFWHYWKNRLRF-EWVITNPPFNEASAILPLAYKHASVGVCFLLRLSYLEPTKARGDWFLEHMDNMSNLIIFGQPRPSFTGDRRVDSVTTAWMVWR 177 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.933.1 >prot_C-linearis_contig105.933.1 ID=prot_C-linearis_contig105.933.1|Name=mRNA_C-linearis_contig105.933.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=158bp MAGGVLDWCGGINDAVCAVLTESSFGVATNDFDGRVVADSHMDATTNAFAback to top mRNA from alignment at C-linearis_contig105:77478..79842- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig105.933.1 ID=mRNA_C-linearis_contig105.933.1|Name=mRNA_C-linearis_contig105.933.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2365bp|location=Sequence derived from alignment at C-linearis_contig105:77478..79842- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig105:77478..79842- >mRNA_C-linearis_contig105.933.1 ID=mRNA_C-linearis_contig105.933.1|Name=mRNA_C-linearis_contig105.933.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at C-linearis_contig105:77478..79842- (Chordaria linearis ClinC8C monoicous)back to top |