mRNA_C-linearis_contig105.933.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 1.710e-56
Identity = 100/176 (56.82%), Postives = 126/176 (71.59%), Query Frame = 1

Query:  697 AVVGRYPSTHSQV*SLLEHVEMAGGVLDWCGGINDAVCAVLTESSFGVATNDFDGRVVADSHMDATTNAFAEAFGEGVRRPEWVVTSPPYKHAFPILKHALRIGRVGVAFKLRLTFLEPTKSRGQWLKDNPPHSIVMLSRATYRGRKCSSTEAWFLWR--SGGVDREESKRPAFFF 1218
            A  GR    H +V +LL +V++AGGVLD CG  +DA+  VL   S  V+TNDF+ R+ AD+H+DAT+  F   F    +RP+W+VTSPPY +AF IL  AL + RVGVAFKLRL+FLEPTK+RG+WLKDNPP ++V+L RATY GR CSSTEAWF+W   S GV+R      AFFF
Sbjct:    5 AACGRV--VHGKVDALLLNVKLAGGVLDACGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWHLASDGVERPGQ---AFFF 175

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BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match: A0A6H5L5Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q9_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.390e-25
Identity = 55/71 (77.46%), Postives = 57/71 (80.28%), Query Frame = -1

Query:  862 PLPPAFCGLKESQPQLECHSHTPNPQSVFQNRECVLVRRARHDPLRAPHSLAEGLRKSVRGGIHMTVCDHP 1074
            PLP  F GLK+SQPQLECH HTPNPQS FQN E VLV RARHDPLRAP  LAEG+ K VR GIHMTVCD P
Sbjct:  172 PLPSGFGGLKKSQPQLECHPHTPNPQSTFQNSEGVLVWRARHDPLRAPPFLAEGIHKCVRRGIHMTVCDQP 242

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BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.180e-21
Identity = 56/131 (42.75%), Postives = 72/131 (54.96%), Query Frame = 1

Query:  784 CGGINDAVCAVLTESSFGVATNDFDGRVVADSHMDATTNAFAEAF--GEGVRRPEWVVTSPPYKHAFPILKHALRIGRVGVAFKLRLTFLEPTKSRGQWLKDNPPHSIVMLSRATY-RGRKCSSTEAWFLW 1167
            CGG  DAV   L  S+  + TND      AD++++A+   F E F      +RPEWVVTSPPY  A   +K A+ +   GVAFK+ + FLEP   RG WL+ NPP   V L RA Y R     + E W +W
Sbjct:    2 CGGPTDAVATRL-RSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVW 131

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BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match: A0A6H5KE39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE39_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.420e-21
Identity = 54/106 (50.94%), Postives = 59/106 (55.66%), Query Frame = 3

Query:  348 MRRGPRASCGRVVHGKRTAEGGLPLCFACDRPGSRETCSRKWNHVGDTEYWEEVSEWSAKVGVEGGVTRETSGKILSRWESASVPGPTASLI*PRVQVAPPEARER 665
            M RG   SCGR VHGK    GGL LCFAC RPGSR+ CS +W HVG T YW EV EWSA VG E    R+  G  L   E        A  I  +VQ A  E R+R
Sbjct:    1 MTRGFLGSCGRAVHGKEAPGGGLGLCFACGRPGSRDGCSSRWKHVGQTTYWAEVGEWSAMVGQEWPHERDLQGDPLKVGECICTRPDCAGGIVQKVQEALREGRKR 106

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BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.400e-20
Identity = 51/65 (78.46%), Postives = 53/65 (81.54%), Query Frame = -2

Query:  882 SHCPLLFVGSRKVSLSLNATPTRPILRACFKIGNACLYGGLVTTHSGRRTPSPKASAKAFVVASI 1076
            SHCPL+ VGSRKVSLSLNATPTRPIL+A FKI  ACLYGGLVTTHSGRR  S K S    VVASI
Sbjct:  172 SHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGRRPSSQKVSTNVSVVASI 236

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BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.420e-20
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1

Query: 1012 VGVAFKLRLTFLEPTKSRGQWLKDNPPHSIVMLSRATYRGRKCSSTEAWFLWRSGG 1179
            +GVAFKLRLTFL P KSRG+WLKDNPP  IVML RATYR R+CSSTE WF+W + G
Sbjct:    1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWETRG 56

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BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 4.820e-20
Identity = 60/143 (41.96%), Postives = 82/143 (57.34%), Query Frame = 1

Query:  703 VGRYPSTHSQV*SLLEHVEMAGGVLDWCGGINDAVCAVLTESSFGVATNDFD-----GRVVADSHMDATTNAFAEAF--GEGVRRPEWVVTSPPYKHAFPILKHALRIGRVGVAFKLRLTFLEPTKSRGQWLKDNPPHSIVML 1110
            + RY ++   V +LL  VE+ G VLD CGG  DA+   L  ++  V TND       G +  D+++DA+  +FA  F   +  +RP+WV+TSPPYK A   +K AL +   GVA KL L+FLEP   RG WL+ NPP   V  
Sbjct:   80 LDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLG-ATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221

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BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match: A0A252D8B1_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=A0A252D8B1_9NOSO)

HSP 1 Score: 97.4 bits (241), Expect = 5.850e-20
Identity = 61/159 (38.36%), Postives = 92/159 (57.86%), Query Frame = 1

Query:  712 YPSTHSQV*SLLEHVEMAGGVLDWCGGINDAVCAVLTESSFGVATNDFDGRVVADSHMD-ATTNAFAEAFGEGVRRP-EWVVTSPPYKHAFPILKHALRIGRVGVAFKLRLTFLEPTKSRGQWLKDNPPHSIVMLSRATYRG--RKCSSTEAWFLWRSG 1176
            Y +  S V +LL H+++ G +L+ C G + A+   L E    V T D     +AD+  D ATT+ + +      ++P +WVVT+PP+  A  IL  A     VGVAF LRL++LEP K RGQWL ++PP  +++L R ++ G  +  S T AW +W+ G
Sbjct:   19 YFTPTSAVDTLLNHIDITGTLLEPCNG-SGAISNRLKEDGLSVITTD-----IADNPQDDATTHQYWQR-----QKPYDWVVTNPPFDSASKILPKAYEYASVGVAFLLRLSYLEPCKDRGQWLAEHPP-KLIVLPRISFTGDGKVDSCTCAWMIWKKG 165

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BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match: A0A6H5KU02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU02_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.040e-15
Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 1

Query:  871 ADSHMDATTNAFAEAF--GEGVRRPEWVVTSPPYKHAFPILKHALRIGRVGVAFKLRLTFLEPTKSRGQWLKDNPPHSIVMLSRATY-RGRKCSSTEAWFLWRSGGVDREESKRPAF 1212
            AD+++DA+  +F E F      +RPEWVVTSPPY  A   +K A+ +   GV FK+ ++ LEP   RG WL+ NPP   + L RA Y R       E W +W +  V      R  F
Sbjct:  137 ADTNLDASLESFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVEFKMPISCLEPCADRGGWLQTNPPSVCLFLRRAKYTRANNAKMGEFWGVWYTQEVSCRNKTRLVF 253

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BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Match: A0A433N1N0_CHLFR (Uncharacterized protein n=1 Tax=Chlorogloeopsis fritschii PCC 6912 TaxID=211165 RepID=A0A433N1N0_CHLFR)

HSP 1 Score: 77.4 bits (189), Expect = 1.210e-12
Identity = 59/162 (36.42%), Postives = 82/162 (50.62%), Query Frame = 1

Query:  712 YPSTHSQV*SLLEHVEMAGGV--LDWCGGINDAVCAVLTESSFGVATNDFDGRV-VADSHMDATTNAFAEAFGEGVRRPEWVVTSPPYKHAFPILKHALRIGRVGVAFKLRLTFLEPTKSRGQWL---KDNPPHSIVM-LSRATYRG--RKCSSTEAWFLWR 1170
            YP+       LLE V++  GV  L+ C G  D +  VL   + GV  +D   +     +  DAT   F   +   +R  EWV+T+PP+  A  IL  A +   VGV F LRL++LEPTK+RG W     DN  + I+    R ++ G  R  S T AW +WR
Sbjct:   18 YPTPAQLTHKLLEVVDIDPGVTILEPCAGEGD-ILNVLQYYNVGVVASDISWQPHPGQTTTDATERLFWHYWKNRLRF-EWVITNPPFNEASAILPLAYKHASVGVCFLLRLSYLEPTKARGDWFLEHMDNMSNLIIFGQPRPSFTGDRRVDSVTTAWMVWR 177

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot

BLAST of mRNA_C-linearis_contig105.933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
A0A6H5K3H5_9PHAE	1.710e-56	56.82	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L5Q9_9PHAE	2.390e-25	77.46	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LSI1_ECTSI	1.180e-21	42.75	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KE39_9PHAE	2.420e-21	50.94	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L6X2_9PHAE	1.400e-20	78.46	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K6T5_9PHAE	1.420e-20	75.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FJU4_ECTSI	4.820e-20	41.96	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A252D8B1_9NOSO	5.850e-20	38.36	Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG...	[more]
A0A6H5KU02_9PHAE	1.040e-15	39.32	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A433N1N0_CHLFR	1.210e-12	36.42	Uncharacterized protein n=1 Tax=Chlorogloeopsis fr...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	72.4
Seed ortholog evalue	2.1e-10
Seed eggNOG ortholog	211165.AJLN01000060_gene3855
Preferred name	ksgA
KEGG rclass	RC00003,RC03257
KEGG ko	ko:K02528,ko:K20444
KEGG TC	4.D.1.3
KEGG Reaction	R10716
Hectar predicted targeting category	other localisation
GOs	GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
EggNOG free text desc.	rRNA (adenine-N6,N6-)-dimethyltransferase activity
EggNOG OGs	COG0030@1,COG0030@2
EC	2.1.1.182
COG Functional cat.	J
CAZy	GT2,GT4
Best tax level	Bacteria
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01000,ko01005,ko02000,ko03009
Exons	3
Model size	1518
Cds size	474
Stop	1
Start	1