Homology
BLAST of mRNA_C-linearis_contig104.921.1 vs. uniprot
Match: D8LE97_ECTSI (Cell division cycle 123 homolog (S. cerevisiae) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE97_ECTSI) HSP 1 Score: 67.8 bits (164), Expect = 1.750e-9 Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = -3 Query: 610 RGPADVGMGTLMCGTGGSGGLELEDLIESCRLADNE 717
RGPADVGMGTL CGTGG+GGLELEDLIESCRLA+ +
Sbjct: 409 RGPADVGMGTLACGTGGNGGLELEDLIESCRLAEKD 444
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.921.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| D8LE97_ECTSI | 1.750e-9 | 86.11 | Cell division cycle 123 homolog (S. cerevisiae) n=... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 720 |
| Cds size | 432 |
| Stop | 1 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927381.915094-CDS-C-linearis_contig104:526589..527021 | 1622927381.915094-CDS-C-linearis_contig104:526589..527021 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 526590..527021 + |
| 1690879666.949746-CDS-C-linearis_contig104:526589..527021 | 1690879666.949746-CDS-C-linearis_contig104:526589..527021 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 526590..527021 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927381.9257255-UTR-C-linearis_contig104:527021..527308 | 1622927381.9257255-UTR-C-linearis_contig104:527021..527308 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 527022..527308 + |
| 1690879666.9590983-UTR-C-linearis_contig104:527021..527308 | 1690879666.9590983-UTR-C-linearis_contig104:527021..527308 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 527022..527308 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.921.1 >prot_C-linearis_contig104.921.1 ID=prot_C-linearis_contig104.921.1|Name=mRNA_C-linearis_contig104.921.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=144bp
KCSTLNTPQRVVHVSPWSERDCRQTKWDENTHTHTHIQHGPAQRTDRCVR
FALPSARLRRAHQQRRPGILAASFARNKTLLRLKTSKEGGQRRLSLRLTR
TCIIANLGHQERDARRHMIRTLQNHIFGLSTRSQGHPWDCHIS* back to topmRNA from alignment at C-linearis_contig104:526590..527308+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig104.921.1 ID=mRNA_C-linearis_contig104.921.1|Name=mRNA_C-linearis_contig104.921.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=719bp|location=Sequence derived from alignment at C-linearis_contig104:526590..527308+ (Chordaria linearis ClinC8C monoicous)
AAGTGTAGTACTCTAAATACACCGCAACGTGTAGTACACGTCTCGCCTTG
GTCGGAAAGGGACTGTCGCCAAACTAAATGGGACGAAAACACACACACAC
ACACACACATACAACACGGTCCGGCACAACGGACAGATCGATGCGTGCGC
TTTGCGTTGCCGTCAGCACGCCTGCGACGCGCACATCAGCAGCGGAGGCC
CGGCATTTTGGCCGCTTCTTTTGCGCGAAACAAAACGCTCTTGCGGCTGA
AAACGTCGAAAGAGGGGGGGCAGCGTAGACTGTCTTTACGATTAACGCGT
ACGTGTATTATTGCGAACCTTGGGCACCAGGAGAGGGACGCACGTCGTCA
CATGATACGCACTCTTCAGAACCACATTTTTGGACTGTCCACAAGATCTC
AAGGACACCCATGGGACTGCCACATATCTTGAGCTGCGTGGCATCGTCGG
AGAACGAACAGAAAAATAAAGGTACACACACACCTACCCAGGAGTTTCTA
CATCCGCTCAACACCTCAGAAGACGCTTTGCAAAATTATTGCTTGAACGA
GCACGACAACGTACATTTACATACCTGTAACCTCCACCAAACAACGCCAA
CTTTCAACTCTCATTGTCGGCAAGGCGACACGACTCGATCAAGTCCTCGA
GCTCCAGGCCCCCTGAGCCCCCCGTACCGCACATCAAGGTCCCCATCCCC
ACGTCCGCTGGCCCTCTAT back to topCoding sequence (CDS) from alignment at C-linearis_contig104:526590..527308+ >mRNA_C-linearis_contig104.921.1 ID=mRNA_C-linearis_contig104.921.1|Name=mRNA_C-linearis_contig104.921.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at C-linearis_contig104:526590..527308+ (Chordaria linearis ClinC8C monoicous)
AAGTGTAGTACTCTAAATACACCGCAACGTGTAGTACACGTCTCGCCTTG
GTCGGAAAGGGACTGTCGCCAAACTAAATGGGACGAAAACACACACACAC
ACACACACATACAACACGGTCCGGCACAACGGACAGATCGATGCGTGCGC
TTTGCGTTGCCGTCAGCACGCCTGCGACGCGCACATCAGCAGCGGAGGCC
CGGCATTTTGGCCGCTTCTTTTGCGCGAAACAAAACGCTCTTGCGGCTGA
AAACGTCGAAAGAGGGGGGGCAGCGTAGACTGTCTTTACGATTAACGCGT
ACGTGTATTATTGCGAACCTTGGGCACCAGGAGAGGGACGCACGTCGTCA
CATGATACGCACTCTTCAGAACCACATTTTTGGACTGTCCACAAGATCTC
AAGGACACCCATGGGACTGCCACATATCTTGAAAGTGTAGTACTCTAAAT
ACACCGCAACGTGTAGTACACGTCTCGCCTTGGTCGGAAAGGGACTGTCG
CCAAACTAAATGGGACGAAAACACACACACACACACACACATACAACACG
GTCCGGCACAACGGACAGATCGATGCGTGCGCTTTGCGTTGCCGTCAGCA
CGCCTGCGACGCGCACATCAGCAGCGGAGGCCCGGCATTTTGGCCGCTTC
TTTTGCGCGAAACAAAACGCTCTTGCGGCTGAAAACGTCGAAAGAGGGGG
GGCAGCGTAGACTGTCTTTACGATTAACGCGTACGTGTATTATTGCGAAC
CTTGGGCACCAGGAGAGGGACGCACGTCGTCACATGATACGCACTCTTCA
GAACCACATTTTTGGACTGTCCACAAGATCTCAAGGACACCCATGGGACT
GCCACATATCTTGA back to top
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