mRNA_C-linearis_contig104.921.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig104.921.1
Unique Name	mRNA_C-linearis_contig104.921.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig104.921.1 vs. uniprot
Match: D8LE97_ECTSI (Cell division cycle 123 homolog (S. cerevisiae) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE97_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.750e-9
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = -3

Query:  610 RGPADVGMGTLMCGTGGSGGLELEDLIESCRLADNE 717
            RGPADVGMGTL CGTGG+GGLELEDLIESCRLA+ +
Sbjct:  409 RGPADVGMGTLACGTGGNGGLELEDLIESCRLAEKD 444

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig104.921.1 vs. uniprot

BLAST of mRNA_C-linearis_contig104.921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1

ZOOM

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POSITION

0


Match Name	E-value	Identity	Description
D8LE97_ECTSI	1.750e-9	86.11	Cell division cycle 123 homolog (S. cerevisiae) n=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig104	contig	C-linearis_contig104:526590..527308 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	720
Cds size	432
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927381.915094-CDS-C-linearis_contig104:526589..527021	1622927381.915094-CDS-C-linearis_contig104:526589..527021	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 526590..527021 +
1690879666.949746-CDS-C-linearis_contig104:526589..527021	1690879666.949746-CDS-C-linearis_contig104:526589..527021	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 526590..527021 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927381.9257255-UTR-C-linearis_contig104:527021..527308	1622927381.9257255-UTR-C-linearis_contig104:527021..527308	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig104 527022..527308 +
1690879666.9590983-UTR-C-linearis_contig104:527021..527308	1690879666.9590983-UTR-C-linearis_contig104:527021..527308	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig104 527022..527308 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig104.921.1	prot_C-linearis_contig104.921.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig104 526590..527021 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig104:526590..527308+
coding sequence from alignment at C-linearis_contig104:526590..527308+

protein sequence of mRNA_C-linearis_contig104.921.1

>prot_C-linearis_contig104.921.1 ID=prot_C-linearis_contig104.921.1|Name=mRNA_C-linearis_contig104.921.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=144bp
KCSTLNTPQRVVHVSPWSERDCRQTKWDENTHTHTHIQHGPAQRTDRCVR
FALPSARLRRAHQQRRPGILAASFARNKTLLRLKTSKEGGQRRLSLRLTR
TCIIANLGHQERDARRHMIRTLQNHIFGLSTRSQGHPWDCHIS*

mRNA from alignment at C-linearis_contig104:526590..527308+

Legend: CDSpolypeptideUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig104.921.1 ID=mRNA_C-linearis_contig104.921.1|Name=mRNA_C-linearis_contig104.921.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=719bp|location=Sequence derived from alignment at C-linearis_contig104:526590..527308+ (Chordaria linearis ClinC8C monoicous)
AAGTGTAGTACTCTAAATACACCGCAACGTGTAGTACACGTCTCGCCTTG
GTCGGAAAGGGACTGTCGCCAAACTAAATGGGACGAAAACACACACACAC
ACACACACATACAACACGGTCCGGCACAACGGACAGATCGATGCGTGCGC
TTTGCGTTGCCGTCAGCACGCCTGCGACGCGCACATCAGCAGCGGAGGCC
CGGCATTTTGGCCGCTTCTTTTGCGCGAAACAAAACGCTCTTGCGGCTGA
AAACGTCGAAAGAGGGGGGGCAGCGTAGACTGTCTTTACGATTAACGCGT
ACGTGTATTATTGCGAACCTTGGGCACCAGGAGAGGGACGCACGTCGTCA
CATGATACGCACTCTTCAGAACCACATTTTTGGACTGTCCACAAGATCTC
AAGGACACCCATGGGACTGCCACATATCTTGAGCTGCGTGGCATCGTCGG
AGAACGAACAGAAAAATAAAGGTACACACACACCTACCCAGGAGTTTCTA
CATCCGCTCAACACCTCAGAAGACGCTTTGCAAAATTATTGCTTGAACGA
GCACGACAACGTACATTTACATACCTGTAACCTCCACCAAACAACGCCAA
CTTTCAACTCTCATTGTCGGCAAGGCGACACGACTCGATCAAGTCCTCGA
GCTCCAGGCCCCCTGAGCCCCCCGTACCGCACATCAAGGTCCCCATCCCC
ACGTCCGCTGGCCCTCTAT

Coding sequence (CDS) from alignment at C-linearis_contig104:526590..527308+

>mRNA_C-linearis_contig104.921.1 ID=mRNA_C-linearis_contig104.921.1|Name=mRNA_C-linearis_contig104.921.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at C-linearis_contig104:526590..527308+ (Chordaria linearis ClinC8C monoicous)
AAGTGTAGTACTCTAAATACACCGCAACGTGTAGTACACGTCTCGCCTTG
GTCGGAAAGGGACTGTCGCCAAACTAAATGGGACGAAAACACACACACAC
ACACACACATACAACACGGTCCGGCACAACGGACAGATCGATGCGTGCGC
TTTGCGTTGCCGTCAGCACGCCTGCGACGCGCACATCAGCAGCGGAGGCC
CGGCATTTTGGCCGCTTCTTTTGCGCGAAACAAAACGCTCTTGCGGCTGA
AAACGTCGAAAGAGGGGGGGCAGCGTAGACTGTCTTTACGATTAACGCGT
ACGTGTATTATTGCGAACCTTGGGCACCAGGAGAGGGACGCACGTCGTCA
CATGATACGCACTCTTCAGAACCACATTTTTGGACTGTCCACAAGATCTC
AAGGACACCCATGGGACTGCCACATATCTTGAAAGTGTAGTACTCTAAAT
ACACCGCAACGTGTAGTACACGTCTCGCCTTGGTCGGAAAGGGACTGTCG
CCAAACTAAATGGGACGAAAACACACACACACACACACACATACAACACG
GTCCGGCACAACGGACAGATCGATGCGTGCGCTTTGCGTTGCCGTCAGCA
CGCCTGCGACGCGCACATCAGCAGCGGAGGCCCGGCATTTTGGCCGCTTC
TTTTGCGCGAAACAAAACGCTCTTGCGGCTGAAAACGTCGAAAGAGGGGG
GGCAGCGTAGACTGTCTTTACGATTAACGCGTACGTGTATTATTGCGAAC
CTTGGGCACCAGGAGAGGGACGCACGTCGTCACATGATACGCACTCTTCA
GAACCACATTTTTGGACTGTCCACAAGATCTCAAGGACACCCATGGGACT
GCCACATATCTTGA