mRNA_C-linearis_contig103.822.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig103.822.1 vs. uniprot
Match: D8LKD0_ECTSI (SsrA-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD0_ECTSI) HSP 1 Score: 252 bits (643), Expect = 2.910e-79 Identity = 127/144 (88.19%), Postives = 137/144 (95.14%), Query Frame = 1 Query: 448 NKKARRNYEILETFEAGIELVGSEVKSCRMSKINMDEGFAQAKNGQCFLHGVHIAECGVSNRFYQHEPRRPRRLLLHKREIRKLQEKVAQKGMTVVPLKIFFNDSNRLKVEIALAQGKNVRDKREDIKVREAKRDIQRIAKNIY 879
++KARRNYEILE F AGIELVGSEVKSCRMSKINMDEGFAQAK GQCFLHG+HIAECGVSNRFYQHEPRRPRRLLLHKREI+KL++KVAQKGMTVVPLKIFF+D+NRLKVEI LA GKNVRDKREDIK R+AKRDIQRI+KN Y
Sbjct: 3 HRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNRLKVEIGLALGKNVRDKREDIKARDAKRDIQRISKNAY 146
BLAST of mRNA_C-linearis_contig103.822.1 vs. uniprot
Match: A0A835YRQ5_9STRA (Small protein B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRQ5_9STRA) HSP 1 Score: 188 bits (477), Expect = 1.910e-52 Identity = 94/149 (63.09%), Postives = 118/149 (79.19%), Query Frame = 1 Query: 424 GPYKVIANNKKARRNYEILETFEAGIELVGSEVKSCRMSKINMDEGFAQAKNGQCFLHGVHIAECGVSNRFYQHEPRRPRRLLLHKREIRKLQEKVAQKGMTVVPLKIFFNDSNRLKVEIALAQGKNVRDKREDIKVREAKRDIQRIAK 870
GP+KVIA NK+A RNYEILETFEAGIEL+G+EVKS R + ++DEG+A AK G+C LHGVHIA SN + QHE +RPRRLLLHKREI++L++ + G T VPL ++FN N LK+ +ALA+GKN RDKR+DI+ REAKRD+QR K
Sbjct: 18 GPFKVIAKNKQAYRNYEILETFEAGIELLGTEVKSARGGRCSIDEGYAAAKRGECVLHGVHIAPYATSNAYDQHEAKRPRRLLLHKREIKRLEDMTTRAGYTAVPLTLYFNHKNLLKISVALARGKNERDKRDDIQQREAKRDLQRAVK 166
BLAST of mRNA_C-linearis_contig103.822.1 vs. uniprot
Match: A0A7S4FCI8_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FCI8_CHRCT) HSP 1 Score: 169 bits (429), Expect = 5.900e-47 Identity = 88/165 (53.33%), Postives = 120/165 (72.73%), Query Frame = 1 Query: 367 LRMMMAESGAPPVKKQKGKGPYKVIANNKKARRNYEILETFEAGIELVGSEVKSCRMSKINMDEGFAQAKNGQCFLHGVHIAECGVSNRFYQHEPRRPRRLLLHKREIRKLQEKVAQKGMTVVPLKIFFNDSNRLKVEIALAQGKNVRDKREDIKVREAKRDIQR 861
L + A S +P + KG G + + N++AR+NYE+LE +EAGI LVG+EVKSCR KIN+ +G+ Q K+G+C+L VHIA S F+QH+ R RRLLL+KREIRKL V QKG+T+VP+K +FN NRLK++IALA+GKNV DKR+ IK R+ R+++R
Sbjct: 12 LASLCAMSRSPVIMMAKGTGVARDVTLNRQARQNYELLEEYEAGISLVGTEVKSCRAGKINLRDGYCQIKDGECWLRNVHIARHQFSGTFFQHDETRSRRLLLNKREIRKLDAAVQQKGLTIVPVKAYFNCDNRLKLQIALARGKNVADKRDTIKQRDTDREVKR 176
BLAST of mRNA_C-linearis_contig103.822.1 vs. uniprot
Match: A0A7S2S2R4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2R4_9STRA) HSP 1 Score: 169 bits (427), Expect = 6.150e-46 Identity = 94/193 (48.70%), Postives = 125/193 (64.77%), Query Frame = 1 Query: 292 RGWCVGGATGLRRRDLTGGVAFKGELRMMMAESGAPPVKKQKGKGPYKVIANNKKARRNYEILETFEAGIELVGSEVKSCRMSKINMDEGFAQAKNGQCFLHGVHIAECGVSNRFYQHEPRRPRRLLLHKREIRKLQEKVAQKGMTVVPLKIFFNDSNRLKVEIALAQGKNVRDKREDIKVREAKRDIQRIAK 870
RGWC GG VA EL + V K Y+V++ NK+ARRNYE LE EAGI LVG+EVK+ R +I+M +GFAQ K G+C+L VHI S F+QHE RR R+LLLHK +IRK ++V K +T+VP+K +FN+ NRLK+++ALA+GKN RDKREDI+ R+A R+++R K
Sbjct: 45 RGWCGGG-----------NVARPAELSAAGRPARRAVVLAAAKKTNYRVVSVNKQARRNYEFLEELEAGISLVGTEVKAIRDGRIDMTDGFAQVKKGECWLKNVHIGPDKSSGPFFQHEARRERKLLLHKNQIRKFNQEVRMKQLTIVPVKAYFNEDNRLKIQLALARGKNTRDKREDIRRRDASRELKRAIK 226
BLAST of mRNA_C-linearis_contig103.822.1 vs. uniprot
Match: A0A7S3EVW1_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EVW1_9EUKA) HSP 1 Score: 166 bits (421), Expect = 1.440e-45 Identity = 83/148 (56.08%), Postives = 114/148 (77.03%), Query Frame = 1 Query: 427 PYKVIANNKKARRNYEILETFEAGIELVGSEVKSCRMSKINMDEGFAQAKNGQCFLHGVHIAECGVSNRFYQHEPRRPRRLLLHKREIRKLQEKVAQKGMTVVPLKIFFNDSNRLKVEIALAQGKNVRDKREDIKVREAKRDIQRIAK 870
P K +A N+ ARRNYEIL+ FEAGI L+G+EVKSCR +++ + +G+ + K+G+C+L VHIA+ G + F+QHE RPRRLLLHKREIRKL+++ Q+G+T+VPL+ +FN+ NR+KVEI LA+GK DKR IK R+ KR+I R K
Sbjct: 44 PSKQVAVNRLARRNYEILDDFEAGISLLGTEVKSCRANQMQLRDGYCRIKDGECWLMNVHIAKHGTTGAFFQHEETRPRRLLLHKREIRKLEKESEQRGLTIVPLRCYFNEQNRMKVEIGLAKGKKNEDKRATIKERDQKREISRQLK 191
BLAST of mRNA_C-linearis_contig103.822.1 vs. uniprot
Match: A0A7S2S2L9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2L9_9STRA) HSP 1 Score: 164 bits (415), Expect = 3.270e-45 Identity = 82/147 (55.78%), Postives = 111/147 (75.51%), Query Frame = 1 Query: 430 YKVIANNKKARRNYEILETFEAGIELVGSEVKSCRMSKINMDEGFAQAKNGQCFLHGVHIAECGVSNRFYQHEPRRPRRLLLHKREIRKLQEKVAQKGMTVVPLKIFFNDSNRLKVEIALAQGKNVRDKREDIKVREAKRDIQRIAK 870
Y+V + NK+ARRNYE LE EAGI LVG+EVK+ R +I+M +GFAQ K G+C+L VHI S F+QHE RR R+LLLHK +IRK ++V K +T+VP+K +FN+ NRLK+++ALA+GKN RDKREDI+ R+A R+++R K
Sbjct: 2 YRVFSVNKQARRNYEFLEELEAGISLVGTEVKAIRDGRIDMTDGFAQVKKGECWLKNVHIGPDKSSGPFFQHEARRERKLLLHKNQIRKFNQEVRMKQLTIVPVKAYFNEDNRLKIQLALARGKNTRDKREDIRRRDASRELKRAIK 148
BLAST of mRNA_C-linearis_contig103.822.1 vs. uniprot
Match: K9FEP1_9CYAN (SsrA-binding protein n=8 Tax=Leptolyngbyaceae TaxID=1890438 RepID=K9FEP1_9CYAN) HSP 1 Score: 160 bits (404), Expect = 1.670e-43 Identity = 84/156 (53.85%), Postives = 117/156 (75.00%), Query Frame = 1 Query: 406 KKQKGKGPYKVIANNKKARRNYEILETFEAGIELVGSEVKSCRMSKINMDEGFAQAKNGQCFLHGVHIAECGVSNRFYQHEPRRPRRLLLHKREIRKLQEKVAQKGMTVVPLKIFFNDSNRLKVEIALAQGKNVRDKREDIKVREAKRDIQRIAKN 873
KK + +KV+A+N++AR YEIL+++EAGIEL G+EVKS R K+N+ +G+AQ KNG+ +L VHI+ ++N+ Y HEPRRPRRLLLHK EIRKL KV +KG+T+VPLK++ R+KV IA+ +GK + DKRE +K ++ KRDI R+ KN
Sbjct: 6 KKSQPSDGFKVMADNRQARFTYEILDSYEAGIELKGTEVKSIRAGKVNLRDGYAQVKNGEVWLLNVHISPHDMTNQAYNHEPRRPRRLLLHKAEIRKLIGKVEEKGLTLVPLKLYLK-KGRVKVNIAIGRGKKLHDKRESLKQKQEKRDIARMMKN 160
BLAST of mRNA_C-linearis_contig103.822.1 vs. uniprot
Match: UPI0016841931 (SsrA-binding protein SmpB n=2 Tax=Leptolyngbya TaxID=47251 RepID=UPI0016841931) HSP 1 Score: 157 bits (396), Expect = 2.050e-42 Identity = 81/148 (54.73%), Postives = 112/148 (75.68%), Query Frame = 1 Query: 430 YKVIANNKKARRNYEILETFEAGIELVGSEVKSCRMSKINMDEGFAQAKNGQCFLHGVHIAECGVSNRFYQHEPRRPRRLLLHKREIRKLQEKVAQKGMTVVPLKIFFNDSNRLKVEIALAQGKNVRDKREDIKVREAKRDIQRIAKN 873
YKV+A+N++AR YEILETFEAGIEL G+EVKS R K+N+ +GFA +NG+ +LH VHI+ +N+ Y H+PRR RRLLLH EIR+L +V QKG+T+VPLK+ +K+ + LA+GK + DKRED+K ++AKR+I+R+ KN
Sbjct: 8 YKVVADNREARFQYEILETFEAGIELRGTEVKSIRQGKVNLRDGFALVRNGEVWLHNVHISPHETTNQVYNHDPRRTRRLLLHAEEIRRLIGQVEQKGLTLVPLKMHLK-RGWIKLSLGLARGKKLHDKREDLKRKQAKREIERVIKN 154
BLAST of mRNA_C-linearis_contig103.822.1 vs. uniprot
Match: A0A6M8B3Q8_9CYAN (SsrA-binding protein n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A6M8B3Q8_9CYAN) HSP 1 Score: 156 bits (395), Expect = 2.780e-42 Identity = 80/147 (54.42%), Postives = 114/147 (77.55%), Query Frame = 1 Query: 430 YKVIANNKKARRNYEILETFEAGIELVGSEVKSCRMSKINMDEGFAQAKNGQCFLHGVHIAECGVSNRFYQHEPRRPRRLLLHKREIRKLQEKVAQKGMTVVPLKIFFNDSNRLKVEIALAQGKNVRDKREDIKVREAKRDIQRIAK 870
YKV+A N++AR YEILETFEAGIELVG+EVKS R K N+ +GFA +NG+ +LH VHI+ +++++ H+PRR R+LL+H++EIRKL KV Q+G+T+VPLK++ +KV +ALA+GK + DKRED+K ++AKR++QR K
Sbjct: 8 YKVVAENRQARFEYEILETFEAGIELVGTEVKSVRAGKANLRDGFALIRNGEVWLHNVHISPHDTASQYFNHDPRRTRKLLMHRQEIRKLIGKVEQQGLTLVPLKMYLK-RGWVKVSLALARGKKLHDKREDLKQKQAKREMQRAMK 153
BLAST of mRNA_C-linearis_contig103.822.1 vs. uniprot
Match: F0Y4W0_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4W0_AURAN) HSP 1 Score: 155 bits (393), Expect = 3.990e-42 Identity = 79/144 (54.86%), Postives = 108/144 (75.00%), Query Frame = 1 Query: 439 IANNKKARRNYEILETFEAGIELVGSEVKSCRMSKINMDEGFAQAKNGQCFLHGVHIAECGVSNRFYQHEPRRPRRLLLHKREIRKLQEKVAQKGMTVVPLKIFFNDSNRLKVEIALAQGKNVRDKREDIKVREAKRDIQRIAK 870
+A+N+KAR +Y ++ T EAGI L G+EVKSCR + +N+ +GFA+ + G +LH V IA + R++QHE + RRLLLHK EIRKL ++A +G T+VPL +FND N LKVE+AL +GKNVRDKR+DIK R+ KR +QRI+K
Sbjct: 1 VASNRKARFDYHVVRTMEAGIALTGTEVKSCRNNNVNLRDGFARVEGGSVWLHNVDIAPHATTARYFQHEAKAKRRLLLHKAEIRKLDGELADQGSTLVPLAFYFNDKNLLKVELALCKGKNVRDKRQDIKERDDKRMMQRISK 144 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.822.1 >prot_C-linearis_contig103.822.1 ID=prot_C-linearis_contig103.822.1|Name=mRNA_C-linearis_contig103.822.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=265bp MRGISQLALLSAAVASLVASVAQGFHLLSGSRRSTAAVDLLRQHREHQRHback to top mRNA from alignment at C-linearis_contig103:117421..122248+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.822.1 ID=mRNA_C-linearis_contig103.822.1|Name=mRNA_C-linearis_contig103.822.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4828bp|location=Sequence derived from alignment at C-linearis_contig103:117421..122248+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:117421..122248+ >mRNA_C-linearis_contig103.822.1 ID=mRNA_C-linearis_contig103.822.1|Name=mRNA_C-linearis_contig103.822.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at C-linearis_contig103:117421..122248+ (Chordaria linearis ClinC8C monoicous)back to top |