mRNA_C-linearis_contig102.780.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig102.780.1 vs. uniprot
Match: D7FH27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH27_ECTSI) HSP 1 Score: 340 bits (872), Expect = 4.010e-111 Identity = 198/283 (69.96%), Postives = 218/283 (77.03%), Query Frame = 1 Query: 34 MPLVHRKRV-ATALAFLACLATRPVADGFLLSPSFSIARKPRVPHNGSISNFAISYFQGASQHQNVVQKVQNDAQRPEELLGEVDTRPSGEKLVNRRAYFEQLLYKTVATVAISGASSLV-APPRRLLAAGLGYEEPGSRWLPEGNPKEASSWFPLLKKCYESLEDVLANWEKYTVRQDGDAIRRLIGTIGVSSPLSSIRKAFTSIRDAEEESQGDIDVIEYVEAYMEVLTALGDAENDLYSANFADYSGGGGTKGSQFITKAEKSLKIAKEEFKVVNQILGI 876
M LV + RV AT AFL CLA P DGFLLSPS ++AR P++G AI+ G + Q V++K P+E+ + P +NRRAYFEQL+YK+VATVAISGASSLV AP R A +EE SRW PEGNPKEA+SWFPLL KCY+SLEDVL NWEKYT RQDGDAIRRLIGTIGVSSPLSSIRKAFTSIRDAEE SQGDIDVIEYVEAYMEVLTALGDAENDLYSANFADYSGGGGTKGSQFI KA KSLKIAK+EFK VN+ILGI
Sbjct: 1 MTLVRQNRVVATIFAFL-CLAV-PSCDGFLLSPSLALARLRSAPNDGDC---AIARQPGGAASQQVLEK-------PDEMPRTLAEEPR----LNRRAYFEQLMYKSVATVAISGASSLVLAPTGRSYA----FEEQASRWQPEGNPKEAASWFPLLAKCYQSLEDVLENWEKYTARQDGDAIRRLIGTIGVSSPLSSIRKAFTSIRDAEEASQGDIDVIEYVEAYMEVLTALGDAENDLYSANFADYSGGGGTKGSQFIAKANKSLKIAKDEFKEVNKILGI 263
BLAST of mRNA_C-linearis_contig102.780.1 vs. uniprot
Match: A0A835ZH00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH00_9STRA) HSP 1 Score: 157 bits (397), Expect = 5.000e-42 Identity = 80/143 (55.94%), Postives = 108/143 (75.52%), Query Frame = 1 Query: 448 WLPEGNPKEASSWFPLLKKCYESLEDVLANWEKYTVR--QDGDAIRRLIGTIGVSSPLSSIRKAFTSIRDAEEESQGDIDVIEYVEAYMEVLTALGDAENDLYSANFADYSGGGGTKGSQFITKAEKSLKIAKEEFKVVNQIL 870
W P G+PK A+SWFPLLK Y +L+D+LANW+ DGDA+RR IGT+GVSSPLS+++K F++IRD+E+ ++ +ID+ ++VEAY VLT L DAENDLYSANFAD+SGGG KG+ FI A+KS+ AK F+ + + L
Sbjct: 14 WGPTGDPKVAASWFPLLKLQYAALKDLLANWDAVAPAGSTDGDAVRRKIGTVGVSSPLSAVKKTFSAIRDSEDVAE-EIDLADFVEAYQAVLTDLSDAENDLYSANFADFSGGGQLKGTNFIKAAKKSIAAAKLNFEEILRTL 155
BLAST of mRNA_C-linearis_contig102.780.1 vs. uniprot
Match: A0A7S2UXU3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXU3_9STRA) HSP 1 Score: 128 bits (322), Expect = 2.510e-30 Identity = 68/159 (42.77%), Postives = 98/159 (61.64%), Query Frame = 1 Query: 382 SLVAPPRRLLAAGLGYEEPGSRWLPEGNPKEASSWFPLLKKCYESLEDVLANWEKYTVRQDGDAIRRLIGTIGVSSPLSSIRKAFTSIRDAEEESQGDIDVIEYVEAYMEVLTALGDAENDLYSANFADYSGGGGTKGSQFITKAEKSLKIAKEEFKVV 858
+L++ L +A +GY W GNPK +W P ++ Y+ LE ++ NW++ + +GD +RR +GT+GVSS L+S +KA +RDA + D IE+ E EV+T LGDAEND YSANFA++SGGG K +QFI KA +K A +K+V
Sbjct: 77 TLISSATLLPSASIGYPPYPQAWKTSGNPKSYKTWAPQVRDGYKRLEIMVENWDEIAAKDNGDEMRRFLGTVGVSSSLTSFKKALYGVRDAVD-LPSSFDEIEWAEKAEEVVTCLGDAENDFYSANFAEFSGGGQLKSAQFIKKARPFVKKA---YKIV 231
BLAST of mRNA_C-linearis_contig102.780.1 vs. uniprot
Match: A0A7S4DIQ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIQ5_HETAK) HSP 1 Score: 110 bits (276), Expect = 4.770e-24 Identity = 58/135 (42.96%), Postives = 88/135 (65.19%), Query Frame = 1 Query: 460 GNPKEASSWFPLLKKCYESLEDVLANWEKYTVRQDGDAIRRLIGTIGVSSPLS--SIRKAFTSIRDAEEESQGDIDVIEYVEAYMEVLTALGDAENDLYSANFADYSGGGGTKGSQFITKAEKSLKIAKEEFKVV 858
G P S+W L++ + L +VL NW+ +R +GD +R+ IGT+G S L+ S+++AF + +A++ +D+ EY E Y EVLTAL DAEN+ YSANFAD+SGGG K SQFI +++K + +A+ K +
Sbjct: 95 GPPASFSTWLAQLEEGEKILVNVLQNWKDLELRDNGDEVRKFIGTVGPVSALNPVSLKRAFLKLAEADD-FPDYVDLDEYAEKYEEVLTALADAENEAYSANFADFSGGGQLKSSQFIKRSQKRIAVAQRALKEI 228
BLAST of mRNA_C-linearis_contig102.780.1 vs. uniprot
Match: A0A2V3IQN4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQN4_9FLOR) HSP 1 Score: 67.0 bits (162), Expect = 1.520e-9 Identity = 34/104 (32.69%), Postives = 61/104 (58.65%), Query Frame = 1 Query: 460 GNPKEASSWFPLLKKCYESLEDVLANWEKYTVRQDGDAIRRLIGTIGVSSPLSSIRKAFTSIRDAEEESQGDIDVIEYVEA-YMEVLTALGDAENDLYSANFAD 768
G+PK+ ++ P ++ Y++L + +WE T DGD +RR++GT+GV SPL +IRK ++ D ++IE +E + +V+ + + LYSA+F +
Sbjct: 14 GDPKKLETYLPQIEAGYQALLGLDRDWEAKTKDFDGDVVRRVLGTVGVKSPLFNIRKPLLKSWQIVADTSTDDELIERLETEWNDVINGISSIDFQLYSASFTE 117
BLAST of mRNA_C-linearis_contig102.780.1 vs. uniprot
Match: A0A5J4Z903_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z903_PORPP) HSP 1 Score: 63.2 bits (152), Expect = 1.320e-7 Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 1 Query: 508 YESLEDVLANWEKYTVRQDGDAIRRLIGTIGVSSPLSSIRKAFTSIRDA--EEESQGDIDVIEYVEAYMEVLTALGDAENDLYSANFAD 768
Y+ + D+ NW + T DGD +RR +GT+G SSPL +I+KAF ++ + E + D D+ E E Y VL + + LYS NF++
Sbjct: 104 YDVMLDLERNWTERTKAFDGDIVRRYLGTVGKSSPLFNIKKAFMAVWKSLSERDDVSDADLEELNEKYNLVLDGISGVDFQLYSVNFSE 192
BLAST of mRNA_C-linearis_contig102.780.1 vs. uniprot
Match: A0A813JFT0_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JFT0_POLGL) HSP 1 Score: 58.5 bits (140), Expect = 7.730e-6 Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 1 Query: 493 LLKKCYESLEDVLANWEKYTVRQDGDAIRRLIGTIGVSSPLSSIRKAFTSIRDAEEESQGDIDVIEYVEAYMEVLTALGDAENDLYSANFADYSG 777
+L + +L D L NW + V DGD+IRR++GT+G +SP+ ++ +A S+ + + D++E EA V L A+ YSANFAD SG
Sbjct: 124 ILSRSEAALADALKNWSR--VAADGDSIRRVLGTVGATSPVYALPRAMRSL------TAENFDILEQTEA---VEFHLRQADFLAYSANFADSSG 207 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.780.1 >prot_C-linearis_contig102.780.1 ID=prot_C-linearis_contig102.780.1|Name=mRNA_C-linearis_contig102.780.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=282bp MPLVHRKRVATALAFLACLATRPVADGFLLSPSFSIARKPRVPHNGSISNback to top mRNA from alignment at C-linearis_contig102:231557..236332+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.780.1 ID=mRNA_C-linearis_contig102.780.1|Name=mRNA_C-linearis_contig102.780.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4776bp|location=Sequence derived from alignment at C-linearis_contig102:231557..236332+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:231557..236332+ >mRNA_C-linearis_contig102.780.1 ID=mRNA_C-linearis_contig102.780.1|Name=mRNA_C-linearis_contig102.780.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1692bp|location=Sequence derived from alignment at C-linearis_contig102:231557..236332+ (Chordaria linearis ClinC8C monoicous)back to top |